-
1
-
-
68249110203
-
Metabolic flux analysis in plants: Coping with complexity
-
Allen, D. K., Libourel, I. G. L., and Shachar-Hill, Y. (2009a). Metabolic flux analysis in plants: coping with complexity. Plant Cell Environ. 32, 1241-1257.
-
(2009)
Plant Cell Environ
, vol.32
, pp. 1241-1257
-
-
Allen, D.K.1
Libourel, I.G.L.2
Shachar-Hill, Y.3
-
2
-
-
64249147274
-
The role of light in soybean seed filling metabolism
-
Allen, D. K., Ohlrogge, J. B., and Shachar-Hill, Y. (2009b). The role of light in soybean seed filling metabolism. Plant J. 58, 220-234.
-
(2009)
Plant J
, vol.58
, pp. 220-234
-
-
Allen, D.K.1
Ohlrogge, J.B.2
Shachar-Hill, Y.3
-
3
-
-
84859315116
-
Quantification of isotope label
-
ed. J. Schwender (New York: Springer
-
Allen, D. K., and Ratcliffe, R. G. (2009). "Quantification of isotope label," in Plant Metabolic Networks, ed. J. Schwender (New York: Springer), 105-149.
-
(2009)
In Plant Metabolic Networks
, pp. 105-149
-
-
Allen, D.K.1
Ratcliffe, R.G.2
-
4
-
-
77955804943
-
Understanding fatty acid synthesis in developing maize embryos using metabolic flux analysis
-
Alonso, A. P., Dale, V. L., and Shachar-Hill, Y. (2010). Understanding fatty acid synthesis in developing maize embryos using metabolic flux analysis. Metab. Eng. 12, 488-497.
-
(2010)
Metab. Eng
, vol.12
, pp. 488-497
-
-
Alonso, A.P.1
Dale, V.L.2
Shachar-Hill, Y.3
-
5
-
-
35148880253
-
Carbon conversion efficiency and central metabolic fluxes in developing sunflower (Helianthus annuus L.) embryos
-
Alonso, A. P., Goffman, F. D., Ohlrogge, J. B., and Shachar-Hill, Y. (2007a). Carbon conversion efficiency and central metabolic fluxes in developing sunflower (Helianthus annuus L.) embryos. Plant J. 52, 296-308.
-
(2007)
Plant J
, vol.52
, pp. 296-308
-
-
Alonso, A.P.1
Goffman, F.D.2
Ohlrogge, J.B.3
Shachar-Hill, Y.4
-
6
-
-
35648931464
-
A metabolic flux analysis to study the role of sucrose synthase in the regulation of the carbon partitioning in central metabolism in maize root tips
-
Alonso, A. P., Raymond, P., Hernould, M., Rondeau-Mouro, C., De Graaf, A., Chourey, P., Lahaye, M., Shachar-Hill, Y., Rolin, D., and Dieuaide-Noubhani, M. (2007b). A metabolic flux analysis to study the role of sucrose synthase in the regulation of the carbon partitioning in central metabolism in maize root tips. Metab. Eng. 9, 419-432.
-
(2007)
Metab. Eng
, vol.9
, pp. 419-432
-
-
Alonso, A.P.1
Raymond, P.2
Hernould, M.3
Rondeau-Mouro, C.4
de Graaf, A.5
Chourey, P.6
Lahaye, M.7
Shachar-Hill, Y.8
Rolin, D.9
Dieuaide-Noubhani, M.10
-
7
-
-
34547693153
-
Substrate cycles in the central metabolism of maize root tips under hypoxia
-
Alonso, A. P., Raymond, P., Rolin, D., and Dieuaide-Noubhani, M. (2007c). Substrate cycles in the central metabolism of maize root tips under hypoxia. Phytochemistry 68, 2222-2231.
-
(2007)
Phytochemistry
, vol.68
, pp. 2222-2231
-
-
Alonso, A.P.1
Raymond, P.2
Rolin, D.3
Dieuaide-Noubhani, M.4
-
8
-
-
78650554169
-
Central metabolic fluxes in the endosperm of developing maize seeds and their implications for metabolic engineering
-
Alonso, A. P., Val, D. L., and Shachar-Hill, Y. (2011). Central metabolic fluxes in the endosperm of developing maize seeds and their implications for metabolic engineering. Metab. Eng. 13, 96-107.
-
(2011)
Metab. Eng
, vol.13
, pp. 96-107
-
-
Alonso, A.P.1
Val, D.L.2
Shachar-Hill, Y.3
-
9
-
-
33644684617
-
A new substrate cycle in plants. Evidence for a high glucose-phosphate-to-glucose turnover from in vivo steady-state and pulse-labeling experiments with [13C]glucose and [14C]glucose
-
Alonso, A. P., Vigeolas, H., Raymond, P., Rolin, D., and Dieuaide-Noubhani, M. (2005). A new substrate cycle in plants. Evidence for a high glucose-phosphate-to-glucose turnover from in vivo steady-state and pulse-labeling experiments with [13C]glucose and [14C]glucose. Plant Physiol. 138, 2220-2232.
-
(2005)
Plant Physiol
, vol.138
, pp. 2220-2232
-
-
Alonso, A.P.1
Vigeolas, H.2
Raymond, P.3
Rolin, D.4
Dieuaide-Noubhani, M.5
-
10
-
-
33845679072
-
Elementary metabolite units (EMU): A novel framework for modeling isotopic distributions
-
Antoniewicz, M. R., Kelleher, J. K., and Stephanopoulos, G. (2007). Elementary metabolite units (EMU): a novel framework for modeling isotopic distributions. Metab. Eng. 9, 68-86.
-
(2007)
Metab. Eng
, vol.9
, pp. 68-86
-
-
Antoniewicz, M.R.1
Kelleher, J.K.2
Stephanopoulos, G.3
-
11
-
-
0035109466
-
A cytosolic ADP-glucose pyrophosphorylase is a feature of graminaceous endosperms, but not of other starch-storing organs
-
Beckles, D. M., Smith, A. M., and ap Rees, T. (2001). A cytosolic ADP-glucose pyrophosphorylase is a feature of graminaceous endosperms, but not of other starch-storing organs. Plant Physiol. 125, 818-827.
-
(2001)
Plant Physiol
, vol.125
, pp. 818-827
-
-
Beckles, D.M.1
Smith, A.M.2
ap Rees, T.3
-
12
-
-
25444467580
-
Large-scale 13C-flux analysis reveals mechanistic principles of metabolic network robustness to null mutations in yeast
-
Blank, L. M., Kuepfer, L., and Sauer, U. (2005). Large-scale 13C-flux analysis reveals mechanistic principles of metabolic network robustness to null mutations in yeast. Genome Biol. 6, R49.
-
(2005)
Genome Biol
, vol.6
-
-
Blank, L.M.1
Kuepfer, L.2
Sauer, U.3
-
13
-
-
78650574197
-
Synergy between 13C-metabolic flux analysis and flux balance analysis for understanding metabolic adaptation to anaerobio-sis in
-
Chen, X., Alonso, A. P., Allen, D. K., Reed, J. L., and Shachar-Hill, Y. (2011). Synergy between 13C-metabolic flux analysis and flux balance analysis for understanding metabolic adaptation to anaerobio-sis in E. coli. Metab. Eng. 13, 38-48.
-
(2011)
E. Coli. Metab. Eng
, vol.13
, pp. 38-48
-
-
Chen, X.1
Alonso, A.P.2
Allen, D.K.3
Reed, J.L.4
Shachar-Hill, Y.5
-
14
-
-
0035281870
-
Metabolic modeling of microbial strains in silico
-
Covert, M. W., Schilling, C. H., Famili, I., Edwards, J. S., Goryanin Ii Selkov, E., and Palsson, B. O. (2001). Metabolic modeling of microbial strains in silico. Trends Biochem. Sci. 26, 179-186.
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 179-186
-
-
Covert, M.W.1
Schilling, C.H.2
Famili, I.3
Edwards, J.S.4
Goryanin Ii Selkov, E.5
Palsson, B.O.6
-
15
-
-
78650258248
-
Workflows for metabolicfluxanaly-sis: Data integration and human interaction
-
Heraklion: Springer-Verlag)
-
Dalman, T., Droste, P., Weitzel, M., Wiechert, W., and Nöh, K. (2010). "Workflows for metabolicfluxanaly-sis: data integration and human interaction," in Proceedings of the 4th International Conference on Leveraging Applications of Formal Methods, Verification, and Validation - Volume Part I (Heraklion: Springer-Verlag).
-
(2010)
In Proceedings of the 4th International Conference On Leveraging Applications of Formal Methods, Verification, and Validation - Volume Part I
-
-
Dalman, T.1
Droste, P.2
Weitzel, M.3
Wiechert, W.4
Nöh, K.5
-
16
-
-
0034233268
-
GC-MS analysis of amino acids rapidly provides rich information for iso-topomer balancing
-
Dauner, M., and Sauer, U. (2000). GC-MS analysis of amino acids rapidly provides rich information for iso-topomer balancing. Biotechnol. Prog. 16, 642-649.
-
(2000)
Biotechnol. Prog
, vol.16
, pp. 642-649
-
-
Dauner, M.1
Sauer, U.2
-
17
-
-
75949088191
-
AraGEM, a genome-scale reconstruction of the primary metabolic network in Arabidopsis
-
de Oliveira Dal Molin, C. G., Quek, L. E., Palfreyman, R. W., Brum-bley, S. M., and Nielsen, L. K. (2010a). AraGEM, a genome-scale reconstruction of the primary metabolic network in Arabidopsis. Plant Physiol. 152, 579-589.
-
(2010)
Plant Physiol
, vol.152
, pp. 579-589
-
-
de Oliveira Dal Molin, C.G.1
Quek, L.E.2
Palfreyman, R.W.3
Brum-Bley, S.M.4
Nielsen, L.K.5
-
18
-
-
78649796264
-
C4GEM, a genome-scale metabolic model to study C4 plant metabolism
-
de Oliveira Dal Molin, C. G., Quek, L. E., Palfreyman, R. W., Brumbley, S. M., and Nielsen, L. K. (2010b). C4GEM, a genome-scale metabolic model to study C4 plant metabolism. Plant Physiol. 154, 1871-1885.
-
(2010)
Plant Physiol
, vol.154
, pp. 1871-1885
-
-
de Oliveira Dal Molin, C.G.1
Quek, L.E.2
Palfreyman, R.W.3
Brumbley, S.M.4
Nielsen, L.K.5
-
19
-
-
0029039185
-
Quantification of compartmented metabolic fluxes in maize root tips using isotope distribution from 13C- or 14C-labeled glucose
-
Dieuaide-Noubhani, M., Raffard, G., Canioni, P., Pradet, A., and Raymond, P. (1995). Quantification of compartmented metabolic fluxes in maize root tips using isotope distribution from 13C- or 14C-labeled glucose. J. Biol. Chem. 270, 13147-13159.
-
(1995)
J. Biol. Chem
, vol.270
, pp. 13147-13159
-
-
Dieuaide-Noubhani, M.1
Raffard, G.2
Canioni, P.3
Pradet, A.4
Raymond, P.5
-
20
-
-
27744600408
-
Changes in flux pattern of the central carbohydrate metabolism during kernel development in maize
-
Ettenhuber, C., Spielbauer, G., Margl, L., Hannah, L. C., Gierl, A., Bacher, A., Genschel, U., and Eisenreich, W. (2005). Changes in flux pattern of the central carbohydrate metabolism during kernel development in maize. Phytochemistry 66, 2632-2642.
-
(2005)
Phytochemistry
, vol.66
, pp. 2632-2642
-
-
Ettenhuber, C.1
Spielbauer, G.2
Margl, L.3
Hannah, L.C.4
Gierl, A.5
Bacher, A.6
Genschel, U.7
Eisenreich, W.8
-
21
-
-
77955801615
-
Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
-
Goecks, J., Nekrutenko, A., and Taylor, J. (2010). Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol. 11, R86.
-
(2010)
Genome Biol
, vol.11
-
-
Goecks, J.1
Nekrutenko, A.2
Taylor, J.3
-
22
-
-
58449106341
-
Flux balance analysis of barley seeds: A computational approach to study systemic properties of central metabolism
-
Grafahrend-Belau, E., Schreiber, F., Koschützki, D., and Junker, B. H. (2009). Flux balance analysis of barley seeds: a computational approach to study systemic properties of central metabolism. Plant Physiol. 149, 585-598.
-
(2009)
Plant Physiol
, vol.149
, pp. 585-598
-
-
Grafahrend-Belau, E.1
Schreiber, F.2
Koschützki, D.3
Junker, B.H.4
-
23
-
-
79960906784
-
Metabolic network reconstruction and flux variability analysis of storage synthesis in developing oilseed rape (Brassica napus L.) embryos
-
Hay, J. O., and Schwender, J. (2011a). Metabolic network reconstruction and flux variability analysis of storage synthesis in developing oilseed rape (Brassica napus L.) embryos. Plant J. 67, 526-541.
-
(2011)
Plant J
, vol.67
, pp. 526-541
-
-
Hay, J.O.1
Schwender, J.2
-
26
-
-
40749095603
-
Metabolic flux maps comparing the effect of temperature on protein and oil biosynthesis in developing soybean cotyledons
-
Iyer, V. V., Sriram, G., Fulton, D. B., Zhou, R., Westgate, M. E., and Shanks, J. V. (2008). Metabolic flux maps comparing the effect of temperature on protein and oil biosynthesis in developing soybean cotyledons. Plant Cell Environ. 31, 506-517.
-
(2008)
Plant Cell Environ
, vol.31
, pp. 506-517
-
-
Iyer, V.V.1
Sriram, G.2
Fulton, D.B.3
Zhou, R.4
Westgate, M.E.5
Shanks, J.V.6
-
27
-
-
34547658908
-
Parallel determination of enzyme activities and in vivo fluxes in Brassica napus embryos grown on organic or inorganic nitrogen source
-
Junker, B. H., Lonien, J., Heady, L. E., Rogers, A., and Schwender, J. (2007). Parallel determination of enzyme activities and in vivo fluxes in Brassica napus embryos grown on organic or inorganic nitrogen source. Phytochemistry 68, 2232-2242.
-
(2007)
Phytochemistry
, vol.68
, pp. 2232-2242
-
-
Junker, B.H.1
Lonien, J.2
Heady, L.E.3
Rogers, A.4
Schwender, J.5
-
28
-
-
77954622985
-
Structural analysis of metabolic networks based on flux centrality
-
Koschutzki, D., Junker, B. H., Schwen-der, J., and Schreiber, F. (2010). Structural analysis of metabolic networks based on flux centrality. J. Theor. Biol. 265, 261-269.
-
(2010)
J. Theor. Biol
, vol.265
, pp. 261-269
-
-
Koschutzki, D.1
Junker, B.H.2
Schwen-Der, J.3
Schreiber, F.4
-
29
-
-
67349212928
-
Insights into plant metabolic networks from steady-state metabolic flux analysis
-
Kruger, N. J., and Ratcliffe, R. G. (2009). Insights into plant metabolic networks from steady-state metabolic flux analysis. Biochimie 91, 697-702.
-
(2009)
Biochimie
, vol.91
, pp. 697-702
-
-
Kruger, N.J.1
Ratcliffe, R.G.2
-
30
-
-
34547693148
-
Design of substrate label for steady state flux measurements in plant systems using the metabolic network of Brassica napus embryos
-
Libourel, I. G., Gehan, J. P., and Shachar-Hill, Y. (2007). Design of substrate label for steady state flux measurements in plant systems using the metabolic network of Brassica napus embryos. Phytochemistry 68, 2211-2221.
-
(2007)
Phytochemistry
, vol.68
, pp. 2211-2221
-
-
Libourel, I.G.1
Gehan, J.P.2
Shachar-Hill, Y.3
-
31
-
-
44949161995
-
Metabolic flux analysis in plants: From intelligent design to rational engineering
-
Libourel, I. G. L., and Shachar-Hill, Y. (2008). Metabolic flux analysis in plants: from intelligent design to rational engineering. Annu. Rev. Plant Biol. 59, 625-650.
-
(2008)
Annu. Rev. Plant Biol
, vol.59
, pp. 625-650
-
-
Libourel, I.G.L.1
Shachar-Hill, Y.2
-
32
-
-
76549087773
-
Intra-cellular metabolite transporters in plants
-
Linka, N., and Weber, A.P.(2010). Intra-cellular metabolite transporters in plants. Mol. Plant 3, 21-53.
-
(2010)
Mol. Plant
, vol.3
, pp. 21-53
-
-
Linka, N.1
Weber, A.P.2
-
33
-
-
39449095000
-
Stoi-chiometric modelling of cell metabolism
-
Llaneras, F., and Pico, J. (2008). Stoi-chiometric modelling of cell metabolism. J. Biosci. Bioeng. 105, 1-11.
-
(2008)
J. Biosci. Bioeng
, vol.105
, pp. 1-11
-
-
Llaneras, F.1
Pico, J.2
-
34
-
-
70350645014
-
Analysis of metabolic flux pheno-types for two Arabidopsis mutants with severe impairment in seed storage lipid synthesis
-
Lonien, J., and Schwender, J. (2009). Analysis of metabolic flux pheno-types for two Arabidopsis mutants with severe impairment in seed storage lipid synthesis. Plant Physiol. 151, 1617-1634.
-
(2009)
Plant Physiol
, vol.151
, pp. 1617-1634
-
-
Lonien, J.1
Schwender, J.2
-
35
-
-
75949123498
-
Subcel-lular flux analysis of central metabolism in a heterotrophic Arabidop-sis cell suspension using steady-state stable isotope labeling
-
Masakapalli, S. K., Le Lay, P., Huddle-ston, J. E., Pollock, N. L., Kruger, N., and Ratcliffe, R. G. (2010). Subcel-lular flux analysis of central metabolism in a heterotrophic Arabidop-sis cell suspension using steady-state stable isotope labeling. Plant Physiol. 152, 602-619.
-
(2010)
Plant Physiol
, vol.152
, pp. 602-619
-
-
Masakapalli, S.K.1
Le Lay, P.2
Huddle-Ston, J.E.3
Pollock, N.L.4
Kruger, N.5
Ratcliffe, R.G.6
-
36
-
-
75649122581
-
Computer science. Accessible reproducible research
-
Mesirov, J. P. (2010). Computer science. Accessible reproducible research. Science 327, 415-416.
-
(2010)
Science
, vol.327
, pp. 415-416
-
-
Mesirov, J.P.1
-
37
-
-
33747199651
-
Challenges to be faced in the reconstruction of metabolic networks from public databases
-
Poolman, M. G., Bonde, B. K., Gevor-gyan, A., Patel, H. H., and Fell, D. A. (2006). Challenges to be faced in the reconstruction of metabolic networks from public databases. Syst. Biol. (Stevenage) 153, 379-384.
-
(2006)
Syst. Biol. (Stevenage)
, vol.153
, pp. 379-384
-
-
Poolman, M.G.1
Bonde, B.K.2
Gevor-Gyan, A.3
Patel, H.H.4
Fell, D.A.5
-
38
-
-
70350676551
-
A genome-scale metabolic model of Arabidopsis and some of its properties
-
Poolman, M. G., Miguet, L., Sweet-love, L. J., and Fell, D. A. (2009). A genome-scale metabolic model of Arabidopsis and some of its properties. Plant Physiol. 151, 1570-1581.
-
(2009)
Plant Physiol
, vol.151
, pp. 1570-1581
-
-
Poolman, M.G.1
Miguet, L.2
Sweet-Love, L.J.3
Fell, D.A.4
-
39
-
-
79954459893
-
Construction of an E. Coli genome-scale atom mapping model for MFA calculations
-
Ravikirthi, P., Suthers, P. F., and Maranas, C. D. (2011). Construction of an E. Coli genome-scale atom mapping model for MFA calculations. Biotechnol. Bioeng. 108, 1372-1382.
-
(2011)
Biotechnol. Bioeng
, vol.108
, pp. 1372-1382
-
-
Ravikirthi, P.1
Suthers, P.F.2
Maranas, C.D.3
-
40
-
-
0037113867
-
The metabolic architecture of plant cells. Stability of central metabolism and flexibility of anabolic pathways during the growth cycle of tomato cells
-
Rontein, D., Dieuaide-Noubhani, M., Dufourc, E. J., Raymond, P., and Rolin, D. (2002). The metabolic architecture of plant cells. Stability of central metabolism and flexibility of anabolic pathways during the growth cycle of tomato cells. J. Biol. Chem. 277, 43948-43960.
-
(2002)
J. Biol. Chem
, vol.277
, pp. 43948-43960
-
-
Rontein, D.1
Dieuaide-Noubhani, M.2
Dufourc, E.J.3
Raymond, P.4
Rolin, D.5
-
41
-
-
79959946634
-
Zea mays iRS1563: A comprehensive genome-scale metabolic reconstruction of maize metabolism
-
doi:10.1371/journal.pone.0021784
-
Saha, R., Suthers, P. F., and Maranas, C. D. (2011). Zea mays iRS1563: a comprehensive genome-scale metabolic reconstruction of maize metabolism. PLoS ONE 6, e21784. doi:10.1371/journal.pone.0021784
-
(2011)
PLoS ONE
, vol.6
-
-
Saha, R.1
Suthers, P.F.2
Maranas, C.D.3
-
42
-
-
0343471424
-
Modeling iso-topomer distributions in biochemical networks using isotopomer mapping matrices
-
Schmidt, K., Carlsen, M., Nielsen, J., and Villadsen, J. (1997). Modeling iso-topomer distributions in biochemical networks using isotopomer mapping matrices. Biotechnol. Bioeng. 55, 831-840.
-
(1997)
Biotechnol. Bioeng
, vol.55
, pp. 831-840
-
-
Schmidt, K.1
Carlsen, M.2
Nielsen, J.3
Villadsen, J.4
-
43
-
-
42249096434
-
Metabolic flux analysis as a tool in metabolic engineering of plants
-
Schwender, J. (2008). Metabolic flux analysis as a tool in metabolic engineering of plants. Curr. Opin. Biotechnol. 19, 131-137.
-
(2008)
Curr. Opin. Biotechnol
, vol.19
, pp. 131-137
-
-
Schwender, J.1
-
44
-
-
70350642851
-
Isotopic steady-state flux analysis
-
ed. J. Schwender (New York: Springer
-
Schwender, J. (2009). "Isotopic steady-state flux analysis,"in Plant Metabolic Networks, ed. J. Schwender (New York: Springer), 245-284.
-
(2009)
Plant Metabolic Networks
, pp. 245-284
-
-
Schwender, J.1
-
45
-
-
10644266747
-
Rubisco without the Calvin cycle improves the carbon efficiency of developing green seeds
-
Schwender, J., Goffman, F., Ohlrogge, J. B., and Shachar-Hill, Y. (2004a). Rubisco without the Calvin cycle improves the carbon efficiency of developing green seeds. Nature 432, 779-782.
-
(2004)
Nature
, vol.432
, pp. 779-782
-
-
Schwender, J.1
Goffman, F.2
Ohlrogge, J.B.3
Shachar-Hill, Y.4
-
46
-
-
2442549780
-
Understanding flux in plant metabolic networks
-
Schwender, J., Ohlrogge, J., and Shachar-Hill, Y. (2004b). Understanding flux in plant metabolic networks. Curr. Opin. Plant Biol. 7, 309-317.
-
(2004)
Curr. Opin. Plant Biol
, vol.7
, pp. 309-317
-
-
Schwender, J.1
Ohlrogge, J.2
Shachar-Hill, Y.3
-
47
-
-
0036740911
-
Probing in vivo metabolism by stable isotope labeling of storage lipids and proteins in developing Brassica napus embryos
-
Schwender, J., and Ohlrogge, J. B. (2002). Probing in vivo metabolism by stable isotope labeling of storage lipids and proteins in developing Brassica napus embryos. Plant Physiol. 130, 347-361.
-
(2002)
Plant Physiol
, vol.130
, pp. 347-361
-
-
Schwender, J.1
Ohlrogge, J.B.2
-
48
-
-
0042531959
-
A flux model of glycolysis and the oxidative pen-tose phosphate pathway in developing Brassica napus embryos
-
Schwender, J., Ohlrogge, J. B., and Shachar-Hill,Y. (2003). A flux model of glycolysis and the oxidative pen-tose phosphate pathway in developing Brassica napus embryos. J. Biol. Chem. 278, 29442-29453.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 29442-29453
-
-
Schwender, J.1
Ohlrogge, J.B.2
-
49
-
-
33845928752
-
Mitochon-drial metabolism in developing embryos of Brassica napus
-
Schwender, J., Shachar-Hill, Y., and Ohlrogge, J. B. (2006). Mitochon-drial metabolism in developing embryos of Brassica napus. J. Biol. Chem. 281, 34040-34047.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 34040-34047
-
-
Schwender, J.1
Shachar-Hill, Y.2
Ohlrogge, J.B.3
-
50
-
-
0028794939
-
Biosynthesis of branched chain amino acids: From test tube to field
-
Singh, B. K., and Shaner, D. L. (1995). Biosynthesis of branched chain amino acids: from test tube to field. Plant Cell 7, 935-944.
-
(1995)
Plant Cell
, vol.7
, pp. 935-944
-
-
Singh, B.K.1
Shaner, D.L.2
-
51
-
-
33746228190
-
Robustness of central carbohydrate metabolism in developing maize kernels
-
Spielbauer, G., Margl, L., Hannah, L. C., Romisch, W., Ettenhuber, C., Bacher, A., Gierl, A., Eisenreich, W., and Genschel, U. (2006). Robustness of central carbohydrate metabolism in developing maize kernels. Phytochemistry 67, 1460-1475.
-
(2006)
Phytochemistry
, vol.67
, pp. 1460-1475
-
-
Spielbauer, G.1
Margl, L.2
Hannah, L.C.3
Romisch, W.4
Ettenhuber, C.5
Bacher, A.6
Gierl, A.7
Eisenreich, W.8
Genschel, U.9
-
52
-
-
12244298643
-
Quantification of compartmented metabolic fluxes in developing soybean embryos by employing biosynthet-ically directed fractional 13C labeling, two-dimensional [13C, 1H] nuclear magnetic resonance, and comprehensive isotopomer balancing
-
Sriram, G., Fulton, D. B., Iyer, V. V., Peterson, J. M., Zhou, R., West-gate, M. E., Spalding, M. H., and Shanks, J. V. (2004). Quantification of compartmented metabolic fluxes in developing soybean embryos by employing biosynthet-ically directed fractional 13C labeling, two-dimensional [13C, 1H] nuclear magnetic resonance, and comprehensive isotopomer balancing. Plant Physiol. 136, 3043-3057.
-
(2004)
Plant Physiol
, vol.136
, pp. 3043-3057
-
-
Sriram, G.1
Fulton, D.B.2
Iyer, V.V.3
Peterson, J.M.4
Zhou, R.5
West-Gate, M.E.6
Spalding, M.H.7
Shanks, J.V.8
-
53
-
-
34547655298
-
Flux quantification in central carbon metabolism of Catharanthus roseus hairy roots by 13C labeling and comprehensive bondomer balancing
-
Sriram, G., Fulton, D. B., and Shanks, J. V. (2007). Flux quantification in central carbon metabolism of Catharanthus roseus hairy roots by 13C labeling and comprehensive bondomer balancing. Phytochem-istry 68, 2243-2257.
-
(2007)
Phytochem-istry
, vol.68
, pp. 2243-2257
-
-
Sriram, G.1
Fulton, D.B.2
Shanks, J.V.3
-
54
-
-
0000713345
-
Capacities of pea chloroplasts to catalyze the oxidative pentose phosphate pathway and glycolysis
-
Stitt, M., and ap Rees, T. (1979). Capacities of pea chloroplasts to catalyze the oxidative pentose phosphate pathway and glycolysis. Phy-tochemistry 18, 1905-1911.
-
(1979)
Phy-tochemistry
, vol.18
, pp. 1905-1911
-
-
Stitt, M.1
ap Rees, T.2
-
55
-
-
35548947590
-
Metabolic flux elucidation for large-scale models using 13C labeled isotopes
-
Suthers, P. F., Burgard, A. P., Dasika, M. S., Nowroozi, F., Van Dien, S., Keasling, J. D., and Maranas, C. D. (2007). Metabolic flux elucidation for large-scale models using 13C labeled isotopes. Metab. Eng. 9, 387-405.
-
(2007)
Metab. Eng
, vol.9
, pp. 387-405
-
-
Suthers, P.F.1
Burgard, A.P.2
Dasika, M.S.3
Nowroozi, F.4
van Dien, S.5
Keasling, J.D.6
Maranas, C.D.7
-
56
-
-
76749140314
-
Improved computational performance of MFA using elementary metabolite units and flux coupling
-
Suthers, P. F., Chang, Y. J., and Maranas, C. D. (2010). Improved computational performance of MFA using elementary metabolite units and flux coupling. Metab. Eng. 12, 123-128.
-
(2010)
Metab. Eng
, vol.12
, pp. 123-128
-
-
Suthers, P.F.1
Chang, Y.J.2
Maranas, C.D.3
-
57
-
-
38149142837
-
Getting to grips with the plant metabolic network
-
Sweetlove, L. J., Fell, D., and Fernie, A. R. (2008). Getting to grips with the plant metabolic network. Biochem. J. 409, 27-41.
-
(2008)
Biochem. J
, vol.409
, pp. 27-41
-
-
Sweetlove, L.J.1
Fell, D.2
Fernie, A.R.3
-
58
-
-
0029146299
-
Biosynthetically directed fractional 13C-labeling of proteinogenic amino acids. An efficient analytical tool to investigate intermediary metabolism
-
Szyperski, T. (1995). Biosynthetically directed fractional 13C-labeling of proteinogenic amino acids. An efficient analytical tool to investigate intermediary metabolism. Eur. J. Biochem. 232, 433-448.
-
(1995)
Eur. J. Biochem
, vol.232
, pp. 433-448
-
-
Szyperski, T.1
-
59
-
-
0031594984
-
13C-NMR,MSand metabolic flux balancing in biotechnology research
-
Szyperski, T. (1998). 13C-NMR,MSand metabolic flux balancing in biotechnology research. Q. Rev. Biophys. 31, 41-106.
-
(1998)
Q. Rev. Biophys
, vol.31
, pp. 41-106
-
-
Szyperski, T.1
-
60
-
-
0345074089
-
Regulation of pyruvate dehydrogenase complex activity in plant cells
-
Tovar-Méndez, A., Miernyk, J. A., and Randall, D. D. (2003). Regulation of pyruvate dehydrogenase complex activity in plant cells. Eur. J. Biochem. 270, 1043-1049.
-
(2003)
Eur. J. Biochem
, vol.270
, pp. 1043-1049
-
-
Tovar-Méndez, A.1
Miernyk, J.A.2
Randall, D.D.3
-
61
-
-
0034813964
-
Possible pitfalls of flux calculations based on 13C-labeling
-
van Winden, W., Verheijen, P., and Hei-jnen, S. (2001a). Possible pitfalls of flux calculations based on 13C-labeling. Metab. Eng. 3, 151-162.
-
(2001)
Metab. Eng
, vol.3
, pp. 151-162
-
-
van Winden, W.1
Verheijen, P.2
Hei-Jnen, S.3
-
62
-
-
0035922029
-
A priori analysis of metabolic flux identifiability from (13)C-labeling data
-
van Winden, W. A., Heijnen, J. J., Verheijen, P. J., and Grievink, J. (2001b). A priori analysis of metabolic flux identifiability from (13)C-labeling data. Biotechnol. Bioeng. 74, 505-516.
-
(2001)
Biotechnol. Bioeng
, vol.74
, pp. 505-516
-
-
van Winden, W.A.1
Heijnen, J.J.2
Verheijen, P.J.3
Grievink, J.4
-
63
-
-
0037203043
-
Cumulative bondomers: A new concept in flux analysis from 2D [13C,1H] COSY NMR data
-
van Winden, W. A., Heijnen, J. J., and Verheijen, P. J. (2002). Cumulative bondomers: a new concept in flux analysis from 2D [13C,1H] COSY NMR data. Biotechnol. Bioeng. 80, 731-745.
-
(2002)
Biotechnol. Bioeng
, vol.80
, pp. 731-745
-
-
van Winden, W.A.1
Heijnen, J.J.2
Verheijen, P.J.3
-
64
-
-
57749195712
-
RNA-Seq: A revolutionary tool for transcriptomics
-
Wang, Z., Gerstein, M., and Snyder, M. (2009). RNA-Seq: a revolutionary tool for transcriptomics. Nat. Rev. Genet. 10, 57-63.
-
(2009)
Nat. Rev. Genet
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
65
-
-
0034741983
-
13C metabolic flux analysis
-
Wiechert, W. (2001). 13C metabolic flux analysis. Metab. Eng. 3, 195-206.
-
(2001)
Metab. Eng
, vol.3
, pp. 195-206
-
-
Wiechert, W.1
-
66
-
-
0029689236
-
In vivo stationary flux analysis by 13C labeling experiments
-
Wiechert, W., and de Graaf, A. A. (1996). In vivo stationary flux analysis by 13C labeling experiments. Adv. Biochem. Eng. Biotechnol. 54, 109-154.
-
(1996)
Adv. Biochem. Eng. Biotechnol
, vol.54
, pp. 109-154
-
-
Wiechert, W.1
de Graaf, A.A.2
-
67
-
-
0034741985
-
A universal framework for 13C metabolic flux analysis
-
Wiechert, W., Möllney, M., Petersen, S., and De Graaf, A. A. (2001). A universal framework for 13C metabolic flux analysis. Metab. Eng. 3, 265-283.
-
(2001)
Metab. Eng
, vol.3
, pp. 265-283
-
-
Wiechert, W.1
Möllney, M.2
Petersen, S.3
de Graaf, A.A.4
-
68
-
-
57749118711
-
Metabolic network fluxes in het-erotrophic Arabidopsis cells: Stability of the flux distribution under different oxygenation conditions
-
Williams, T. C., Miguet, L., Masaka-palli, S. K., Kruger, N. J., Sweetlove, L. J., and Ratcliffe, R. G. (2008). Metabolic network fluxes in het-erotrophic Arabidopsis cells: stability of the flux distribution under different oxygenation conditions. Plant Physiol. 148, 704-718.
-
(2008)
Plant Physiol
, vol.148
, pp. 704-718
-
-
Williams, T.C.1
Miguet, L.2
Masaka-Palli, S.K.3
Kruger, N.J.4
Sweetlove, L.J.5
Ratcliffe, R.G.6
-
69
-
-
77956703554
-
A genome-scale metabolic model accurately predicts fluxes in central carbon metabolism under stress conditions
-
Williams, T. C., Poolman, M. G., How-den, A. J., Schwarzlander, M., Fell, D. A., Ratcliffe, R. G., and Sweetlove, L. J. (2010). A genome-scale metabolic model accurately predicts fluxes in central carbon metabolism under stress conditions. Plant Physiol. 154, 311-323.
-
(2010)
Plant Physiol
, vol.154
, pp. 311-323
-
-
Williams, T.C.1
Poolman, M.G.2
How-Den, A.J.3
Schwarzlander, M.4
Fell, D.A.5
Ratcliffe, R.G.6
Sweetlove, L.J.7
-
70
-
-
66749182798
-
13)C-based metabolic flux analysis
-
Zamboni, N., Fendt, S. M., Ruhl, M., and Sauer, U. (2009). (13)C-based metabolic flux analysis. Nat. Protoc. 4, 878-892.
-
(2009)
Nat. Protoc
, vol.4
, pp. 878-892
-
-
Zamboni, N.1
Fendt, S.M.2
Ruhl, M.3
Sauer, U.4
|