-
1
-
-
33644520519
-
The genomes online database (GOLD) v.2: A monitor of genome projects worldwide
-
Liolios, K., Tavemarakis, N., Hugenholtz, P. and Kyrpides, N. (2006) The genomes online database (GOLD) v.2: A monitor of genome projects worldwide. Nucleic Acids Res., 34, D332-D334.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Liolios, K.1
Tavemarakis, N.2
Hugenholtz, P.3
Kyrpides, N.4
-
3
-
-
38549145932
-
-
database of genomes, transcripts, and proteins. Nucleic Acid Res., 35, D61-D65.
-
database of genomes, transcripts, and proteins. Nucleic Acid Res., 35, D61-D65.
-
-
-
-
4
-
-
33846056843
-
Entrez Gene: Gene-centered information at NCBI
-
Maglott, D.R., Ostell, J., Pruitt, K.D. and Tatusova, T. (2007) Entrez Gene: Gene-centered information at NCBI. Nucleic Acid Res., 35 D26-D31.
-
(2007)
Nucleic Acid Res
, vol.35
-
-
Maglott, D.R.1
Ostell, J.2
Pruitt, K.D.3
Tatusova, T.4
-
5
-
-
22244489084
-
The Microbes Online web site for comparative genomics
-
Alm, E.J., Huang, K.H., Price, M.N., Koche, R.P., Keller, K., Dubchak, I.L. and Arkin, A.P. (2005) The Microbes Online web site for comparative genomics. Genome Res., 15, 1015-1022.
-
(2005)
Genome Res
, vol.15
, pp. 1015-1022
-
-
Alm, E.J.1
Huang, K.H.2
Price, M.N.3
Koche, R.P.4
Keller, K.5
Dubchak, I.L.6
Arkin, A.P.7
-
6
-
-
0033963089
-
The ENZYME database in 2000
-
Bairoch, A. (2000) The ENZYME database in 2000. Nucleic Acids Res. 28, 304-305.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 304-305
-
-
Bairoch, A.1
-
7
-
-
0030660581
-
Genomic perspective on protein families
-
Tatusoy, R.L., Koonin, E.V. and Lipman, D.J.A. (1997) Genomic perspective on protein families. Science, 278, 631-637.
-
(1997)
Science
, vol.278
, pp. 631-637
-
-
Tatusoy, R.L.1
Koonin, E.V.2
Lipman, D.J.A.3
-
8
-
-
9144257886
-
The Pfam protein families database
-
Bateman, A., Coin, L., Durbin, R., Finn, R.D., Hollich, V., Griffiths-Jones, S., Khanna, A., Marshall, M., Moxon, S. et al. (2004) The Pfam protein families database. Nucleic Acids Res., 32, D138-D141.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Bateman, A.1
Coin, L.2
Durbin, R.3
Finn, R.D.4
Hollich, V.5
Griffiths-Jones, S.6
Khanna, A.7
Marshall, M.8
Moxon, S.9
-
9
-
-
33846113652
-
TIGRFAMs and Genome Properties: Tools for the assignment of molecular function and biological process in prokaryotic genomes
-
Selengut, J.D., Haft, D.H., Davidsen, T., Ganapathy, A., Gwinn-Giglio, M., Nelson, W.C., Richter, A.R. and White, O. (2007) TIGRFAMs and Genome Properties: Tools for the assignment of molecular function and biological process in prokaryotic genomes. Nucleic Acids Res., 35, D260-D264.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Selengut, J.D.1
Haft, D.H.2
Davidsen, T.3
Ganapathy, A.4
Gwinn-Giglio, M.5
Nelson, W.C.6
Richter, A.R.7
White, O.8
-
10
-
-
13444282474
-
InterPro, progress and status in 2005
-
Mulder, N.J., Apweiler, R., Attwood, T.K., Bairoch, A., Bateman, A., Binns, D., Bradley, P., Bork, P., Bucher, P. et al. (2005) InterPro, progress and status in 2005. Nucleic Acids Res., 33 D201-D205.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Mulder, N.J.1
Apweiler, R.2
Attwood, T.K.3
Bairoch, A.4
Bateman, A.5
Binns, D.6
Bradley, P.7
Bork, P.8
Bucher, P.9
-
11
-
-
0345863935
-
The KEGG resource for deciphering the genome
-
Kanehisa, M., Goto, S, Kawashima, S., Okuno, Y. and Hattori, M. (2004) The KEGG resource for deciphering the genome. Nucleic Acids Res., 32, D277-D280.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Kanehisa, M.1
Goto, S.2
Kawashima, S.3
Okuno, Y.4
Hattori, M.5
-
12
-
-
0346801873
-
The Gene Ontology Database and Informatics Resource
-
Gene Ontology Consortium
-
Gene Ontology Consortium (2004) The Gene Ontology Database and Informatics Resource. Nucleic Acids Res., 32, 258-261.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 258-261
-
-
-
13
-
-
0036087630
-
CDD: A databasc of conserved domain alignments with links to domain three-dimensional structure
-
Marchler-Bauer, A., Panchenko, A.R., Shoemaker, B.A., Thiessen, P.A., Geer, L.Y. and Bryant, S.H. (2002) CDD: A databasc of conserved domain alignments with links to domain three-dimensional structure. Nucleic Acids Res., 30, 281-283.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 281-283
-
-
Marchler-Bauer, A.1
Panchenko, A.R.2
Shoemaker, B.A.3
Thiessen, P.A.4
Geer, L.Y.5
Bryant, S.H.6
-
14
-
-
0345531106
-
Enzyme-specific profiles for genome annotation: PRIAM
-
Claudel-Renard, C., Chevalet, C., Faraut, T. and Daniel Kahn, D. (2003) Enzyme-specific profiles for genome annotation: PRIAM. Nucleic Acids Res., 31, 6633-6639.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 6633-6639
-
-
Claudel-Renard, C.1
Chevalet, C.2
Faraut, T.3
Daniel Kahn, D.4
-
15
-
-
33846041078
-
The universal protein resource (UniProt)
-
The UniProt Consortium
-
The UniProt Consortium (2007) The universal protein resource (UniProt). Nucleic Acids Res., 35, D193-D197.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
-
16
-
-
0037252684
-
Rfam: An RNA family database
-
Griffiths-Jones, S., Bateman, A., Marshall, M., Khanna, A. and Eddy, S.R. (2003) Rfam: An RNA family database. Nucleic Acids Res., 31, 439-441.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 439-441
-
-
Griffiths-Jones, S.1
Bateman, A.2
Marshall, M.3
Khanna, A.4
Eddy, S.R.5
-
17
-
-
38549166674
-
Metabolic reconstruction of microbial genomes and microbial community metagenomes
-
Technical report 62292. Lawrence Berkeley National Laboratory
-
Ivanova, N.N., Anderson, I., Lykidis, A., Mavrommatis, K., Mikhailova, N., Chen, I.A., Szeto, E., Palaniappan, K., Markowitz, V.M. et al. (2007) Metabolic reconstruction of microbial genomes and microbial community metagenomes. Technical report 62292. Lawrence Berkeley National Laboratory.
-
(2007)
-
-
Ivanova, N.N.1
Anderson, I.2
Lykidis, A.3
Mavrommatis, K.4
Mikhailova, N.5
Chen, I.A.6
Szeto, E.7
Palaniappan, K.8
Markowitz, V.M.9
-
18
-
-
34447644810
-
CRISPR Recognition Tool (CRT): A tool for automatic detection of clustered regularly interspaced palindromic repeats
-
Bland, C., Ramsey, T.L., Sabree, F., Lowe, M., Brown, K., Kyrpides, N.C. and Hugenholtz, P. (2007) CRISPR Recognition Tool (CRT): A tool for automatic detection of clustered regularly interspaced palindromic repeats. BMC Bioinformatics, 8, 209.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 209
-
-
Bland, C.1
Ramsey, T.L.2
Sabree, F.3
Lowe, M.4
Brown, K.5
Kyrpides, N.C.6
Hugenholtz, P.7
-
19
-
-
34248531753
-
Locating proteins in the cell using Target P, Signal P, and related tools
-
Emanuelsson, O., Brunak, S., von Heijne, G. and Nielsen, H. (2007) Locating proteins in the cell using Target P, Signal P, and related tools. Nat. Protoc., 2, 953-971.
-
(2007)
Nat. Protoc
, vol.2
, pp. 953-971
-
-
Emanuelsson, O.1
Brunak, S.2
von Heijne, G.3
Nielsen, H.4
-
20
-
-
0034899781
-
Evaluation of methods for the prediction of membrane spanning regions
-
Moller, S., Croning, M.D.R. and Apweiler, R. (2001) Evaluation of methods for the prediction of membrane spanning regions. Bioinformatics, 17, 646-653.
-
(2001)
Bioinformatics
, vol.17
, pp. 646-653
-
-
Moller, S.1
Croning, M.D.R.2
Apweiler, R.3
-
21
-
-
3242891068
-
VISTA: Computational tools for comparative genomics
-
Frazer, K.A, Pachter, L., Poliakov, A., Rubin, E.M. and Dubchak, I. (2004) VISTA: Computational tools for comparative genomics. Nucleic Acids Reg., 32, W273-W279.
-
(2004)
Nucleic Acids Reg
, vol.32
-
-
Frazer, K.A.1
Pachter, L.2
Poliakov, A.3
Rubin, E.M.4
Dubchak, I.5
-
22
-
-
34250336912
-
Insights into the metabolism of elemental sulfur by the hyperthermophilic archaeon Pyrococcus furiosus: Characterization of a coenzyme a-dependent NAD(P)H Sulfur Oxidoreductase
-
Schut, G.J., Bridger, S.L. and Adams, M.W. (2007) Insights into the metabolism of elemental sulfur by the hyperthermophilic archaeon Pyrococcus furiosus: Characterization of a coenzyme a-dependent NAD(P)H Sulfur Oxidoreductase. J. Bacteriol., 189, 4431-4441.
-
(2007)
J. Bacteriol
, vol.189
, pp. 4431-4441
-
-
Schut, G.J.1
Bridger, S.L.2
Adams, M.W.3
-
23
-
-
33644877904
-
MetaCyc: A multiorganism database of metabolic pathways and enzymes
-
Caspi, R., Foerster, H., Fulcher, C.A., Hopkinson, R. et al. (2006) MetaCyc: A multiorganism database of metabolic pathways and enzymes. Nucleic Acids Res., 34, D511-D516.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Caspi, R.1
Foerster, H.2
Fulcher, C.A.3
Hopkinson, R.4
|