-
1
-
-
0001080764
-
Internal inorganic carbon pool of Chlamydomonas reinhardtii: Evidence for a carbon dioxide-concentrating mechanism
-
doi:10.1104/pp.66.3.407. PubMed: 16661446
-
Badger MR, Kaplan A, Berry JA (1980) Internal inorganic carbon pool of Chlamydomonas reinhardtii: Evidence for a carbon dioxide-concentrating mechanism. Plant Physiol 66: 407-413. doi:10.1104/pp.66.3.407. PubMed: 16661446.
-
(1980)
Plant Physiol
, vol.66
, pp. 407-413
-
-
Badger, M.R.1
Kaplan, A.2
Berry, J.A.3
-
2
-
-
0033499007
-
2 concentrating mechanisms in photosynthetic microorganisms
-
doi:10.1146/annurev.arplant.50.1.539. PubMed: 15012219
-
2 concentrating mechanisms in photosynthetic microorganisms. Annu Rev Plant Physiol Plant Mol Biol 50: 539-570. doi:10.1146/annurev.arplant.50.1.539. PubMed: 15012219.
-
(1999)
Annu Rev Plant Physiol Plant Mol Biol
, vol.50
, pp. 539-570
-
-
Kaplan, A.1
Reinhold, L.2
-
3
-
-
77958601222
-
2] of the past
-
doi:10.1111/j.1469-8137.2010.03441.x. PubMed: 20840509
-
2] of the past. New Phytol 188: 674-695. doi:10.1111/j.1469-8137.2010.03441.x. PubMed: 20840509.
-
(2010)
New Phytol
, vol.188
, pp. 674-695
-
-
Gerhart, L.M.1
Ward, J.K.2
-
4
-
-
78650614634
-
Will ocean acidification affect marine microbes?
-
doi:10.1038/ismej.2010.79. PubMed: 20535222
-
Joint I, Doney SC, Karl DM (2011) Will ocean acidification affect marine microbes? ISME J 5: 1-7. doi:10.1038/ismej.2010.79. PubMed: 20535222.
-
(2011)
ISME J
, vol.5
, pp. 1-7
-
-
Joint, I.1
Doney, S.C.2
Karl, D.M.3
-
6
-
-
42049113048
-
2 conditions?
-
doi: 10.1111/j.1399-3054.2008.01062.x. PubMed: 18298410
-
2 conditions? Physiol Plant 133: 41-48. doi: 10.1111/j.1399-3054.2008.01062.x. PubMed: 18298410.
-
(2008)
Physiol Plant
, vol.133
, pp. 41-48
-
-
Spijkerman, E.1
-
7
-
-
50649121918
-
Expression analysis of genes associated with the induction of the carbon-concentrating mechanism in Chlamydomonas reinhardtii
-
doi:10.1104/pp.107.114652. PubMed: 18322145
-
Yamano T, Miura K, Fukuzawa H (2008) Expression analysis of genes associated with the induction of the carbon-concentrating mechanism in Chlamydomonas reinhardtii. Plant Physiol 147: 340-354. doi:10.1104/pp.107. 114652. PubMed: 18322145.
-
(2008)
Plant Physiol
, vol.147
, pp. 340-354
-
-
Yamano, T.1
Miura, K.2
Fukuzawa, H.3
-
8
-
-
0035942253
-
Ccm1, a regulatory gene controlling the induction of a carbon-concentrating mechanism in Chlamydomonas reinhardtii by sensing CO2 availability
-
Fukuzawa H, Miura K, Ishizaki K, Kucho KI, Saito T et al. (2001) Ccm1, a regulatory gene controlling the induction of a carbon-concentrating mechanism in Chlamydomonas reinhardtii by sensing CO2 availability. Proc; Natl Acad Sci U S A 98: 5347-5352.
-
(2001)
Proc; Natl Acad Sci U S A
, vol.98
, pp. 5347-5352
-
-
Fukuzawa, H.1
Miura, K.2
Ishizaki, K.3
Kucho, K.I.4
Saito, T.5
-
9
-
-
34547923150
-
Proposed carbon dioxide concentrating mechanism in Chlamydomonas reinhardtii
-
doi:10.1128/EC.00064-07. PubMed: 17557885
-
Moroney JV, Ynalvez RA (2007) Proposed carbon dioxide concentrating mechanism in Chlamydomonas reinhardtii. Eukaryot Cell 6: 1251-1259. doi:10.1128/EC.00064-07. PubMed: 17557885.
-
(2007)
Eukaryot Cell
, vol.6
, pp. 1251-1259
-
-
Moroney, J.V.1
Ynalvez, R.A.2
-
10
-
-
62449323128
-
Carbon-concentrating mechanism in a green alga, Chlamydomonas reinhardtii, revealed by transcriptome analyses
-
doi:10.1002/jobm.200800352. PubMed: 19253331
-
Yamano T, Fukuzawa H (2009) Carbon-concentrating mechanism in a green alga, Chlamydomonas reinhardtii, revealed by transcriptome analyses. J Basic Microbiol 49: 42-51. doi:10.1002/jobm.200800352. PubMed: 19253331.
-
(2009)
J Basic Microbiol
, vol.49
, pp. 42-51
-
-
Yamano, T.1
Fukuzawa, H.2
-
11
-
-
0038324426
-
2-concentrating mechanism in the cyanobacterium Synechocystis sp. Strain PCC6803
-
doi:10.1104/pp.019349. PubMed: 12746527
-
2-concentrating mechanism in the cyanobacterium Synechocystis sp. strain PCC6803. Plant Physiol 132: 218-229. doi:10.1104/pp.019349. PubMed: 12746527.
-
(2003)
Plant Physiol
, vol.132
, pp. 218-229
-
-
McGinn, P.J.1
Price, G.D.2
Maleszka, R.3
Badger, M.R.4
-
12
-
-
84856977385
-
2 concentrations
-
PubMed: 21286811
-
2 concentrations. Photosynth Res, 109: 1-11. PubMed: 21286811.
-
(2011)
Photosynth Res
, vol.109
, pp. 1-11
-
-
Spijkerman, E.1
-
13
-
-
0001720197
-
Light-induced carbonic anhydrase expression in Chlamydomonas reinhardtii
-
doi:10.1104/pp.94.3.1103. PubMed: 16667803
-
Dionisio-Sese ML, Fukuzawa H, Miyachi S (1990) Light-induced carbonic anhydrase expression in Chlamydomonas reinhardtii. Plant Physiol 94: 1103-1110. doi:10.1104/pp.94.3.1103. PubMed: 16667803.
-
(1990)
Plant Physiol
, vol.94
, pp. 1103-1110
-
-
Dionisio-Sese, M.L.1
Fukuzawa, H.2
Miyachi, S.3
-
14
-
-
2942681146
-
2-responsive genes regulated by CCM1 controlling a carbon-concentrating mechanism in Chlamydomonas reinhardtii
-
doi:10.1104/pp.104.041400. PubMed: 15235119
-
2-responsive genes regulated by CCM1 controlling a carbon-concentrating mechanism in Chlamydomonas reinhardtii. Plant Physiol 135: 1595-1607. doi:10.1104/pp.104.041400. PubMed: 15235119.
-
(2004)
Plant Physiol
, vol.135
, pp. 1595-1607
-
-
Miura, K.1
Yamano, T.2
Yoshioka, S.3
Kohinata, T.4
Inoue, Y.5
-
15
-
-
2942668562
-
The novel Myb transcription factor LCR1 regulates the CO2-responsive gene Cah1, encoding a periplasmic carbonic anhydrase in Chlamydomonas reinhardtii
-
Yoshioka S, Taniguchi F, Miura K, Inoue T, Yamano T et al. (2004) The novel Myb transcription factor LCR1 regulates the CO2-responsive gene Cah1, encoding a periplasmic carbonic anhydrase in Chlamydomonas reinhardtii. Plant Cell 16: 1466-1477.
-
(2004)
Plant Cell
, vol.16
, pp. 1466-1477
-
-
Yoshioka, S.1
Taniguchi, F.2
Miura, K.3
Inoue, T.4
Yamano, T.5
-
16
-
-
51449111835
-
Green transcription factors: A chlamydomonas overview
-
doi:10.1534/genetics.107.086090. PubMed: 18493038
-
Riaño-Pachón DM, Corrêa LG, Trejos-Espinosa R, Mueller-Roeber B (2008) Green transcription factors: a chlamydomonas overview. Genetics 179: 31-39. doi:10.1534/genetics.107.086090. PubMed: 18493038.
-
(2008)
Genetics
, vol.179
, pp. 31-39
-
-
Riaño-Pachón, D.M.1
Corrêa, L.G.2
Trejos-Espinosa, R.3
Mueller-Roeber, B.4
-
17
-
-
33847267229
-
PlnTFDB: An integrative plant transcription factor database
-
doi:10.1186/1471-2105-8-42. PubMed: 17286856
-
Riaño-Pachón DM, Ruzicic S, Dreyer I, Mueller-Roeber B (2007) PlnTFDB: an integrative plant transcription factor database. BMC Bioinformatics 8: 42. doi:10.1186/1471-2105-8-42. PubMed: 17286856.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 42
-
-
Riaño-Pachón, D.M.1
Ruzicic, S.2
Dreyer, I.3
Mueller-Roeber, B.4
-
18
-
-
35348896591
-
The Chlamydomonas genome reveals the evolution of key animal and plant functions
-
doi:10.1126/science.1143609. PubMed: 17932292
-
Merchant SS, Prochnik SE, Vallon O, Harris EH, Karpowicz SJ et al. (2007) The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science 318: 245-250. doi:10.1126/science.1143609. PubMed: 17932292.
-
(2007)
Science
, vol.318
, pp. 245-250
-
-
Merchant, S.S.1
Prochnik, S.E.2
Vallon, O.3
Harris, E.H.4
Karpowicz, S.J.5
-
19
-
-
79961117812
-
Inner composition alignment for inferring directed networks from short time series
-
doi:10.1103/PhysRevLett.107.054101. PubMed: 21867072
-
Hempel S, Koseska A, Kurths J, Nikoloski Z (2011) Inner composition alignment for inferring directed networks from short time series. Phys Rev Lett 107: 054101. doi:10.1103/PhysRevLett.107.054101. PubMed: 21867072.
-
(2011)
Phys Rev Lett
, vol.107
, pp. 054101
-
-
Hempel, S.1
Koseska, A.2
Kurths, J.3
Nikoloski, Z.4
-
20
-
-
0033375901
-
CO(2)-responsive transcriptional regulation of CAH1 encoding carbonic anhydrase is mediated by enhancer and silencer regions in Chlamydomonas reinhardtii
-
doi:10.1104/pp.121.4.1329. PubMed: 10594120
-
Kucho Ki, Ohyama K, Fukuzawa H (1999) CO(2)-responsive transcriptional regulation of CAH1 encoding carbonic anhydrase is mediated by enhancer and silencer regions in Chlamydomonas reinhardtii. Plant Physiol 121: 1329-1338. doi:10.1104/pp.121.4.1329. PubMed: 10594120.
-
(1999)
Plant Physiol
, vol.121
, pp. 1329-1338
-
-
Ki Ohyama K Fukuzawa H, K.1
-
21
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS)
-
doi:10.1186/gb-2008-9-9-r137. PubMed: 18798982
-
Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS et al. (2008) Model-based analysis of ChIP-Seq (MACS). Genome Biol 9: R137. doi:10.1186/gb-2008-9-9-r137. PubMed: 18798982.
-
(2008)
Genome Biol
, vol.9
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
-
22
-
-
33749406106
-
Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters
-
doi:10.1371/journal.pgen.0020158. PubMed: 17002501
-
Hogan GJ, Lee CK, Lieb JD (2006) Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters. PLOS Genet 2: e158. doi:10.1371/journal. pgen.0020158. PubMed: 17002501.
-
(2006)
PLOS Genet
, vol.2
-
-
Hogan, G.J.1
Lee, C.K.2
Lieb, J.D.3
-
23
-
-
0032729435
-
Exploring expression data: Identification and analysis of coexpressed genes
-
doi:10.1101/gr.9.11.1106. PubMed: 10568750
-
Heyer LJ, Kruglyak S, Yooseph S (1999) Exploring expression data: identification and analysis of coexpressed genes. Genome Res 9: 1106-1115. doi:10.1101/gr.9.11.1106. PubMed: 10568750.
-
(1999)
Genome Res
, vol.9
, pp. 1106-1115
-
-
Heyer, L.J.1
Kruglyak, S.2
Yooseph, S.3
-
24
-
-
0142183471
-
2-responsive transcriptional activation of Cah1 encoding a periplasmic carbonic anhydrase in Chlamydomonas reinhardtii
-
doi:10.1104/pp.103.026492. PubMed: 14555782
-
2-responsive transcriptional activation of Cah1 encoding a periplasmic carbonic anhydrase in Chlamydomonas reinhardtii. Plant Physiol 133: 783-793. doi:10.1104/pp.103. 026492. PubMed: 14555782.
-
(2003)
Plant Physiol
, vol.133
, pp. 783-793
-
-
Kucho, K.1
Yoshioka, S.2
Taniguchi, F.3
Ohyama, K.4
Fukuzawa, H.5
-
25
-
-
84863104468
-
Transcriptome-Wide Changes in Chlamydomonas reinhardtii Gene Expression Regulated by Carbon Dioxide and the CO2-Concentrating Mechanism Regulator CIA5/CCM1
-
doi:10.1105/tpc.112.097949. PubMed: 22634760
-
Fang W, Si Y, Douglass S, Casero D, Merchant SS et al. (2012) Transcriptome-Wide Changes in Chlamydomonas reinhardtii Gene Expression Regulated by Carbon Dioxide and the CO2-Concentrating Mechanism Regulator CIA5/CCM1. Plant Cell 24: 1876-1893. doi:10.1105/tpc.112.097949. PubMed: 22634760.
-
(2012)
Plant Cell
, vol.24
, pp. 1876-1893
-
-
Fang, W.1
Si, Y.2
Douglass, S.3
Casero, D.4
Merchant, S.S.5
-
26
-
-
84863083845
-
Activation of the Carbon Concentrating Mechanism by CO2 Deprivation Coincides with Massive Transcriptional Restructuring in Chlamydomonas reinhardtii
-
doi:10.1105/tpc.111.093435. PubMed: 22634764
-
Brueggeman AJ, Gangadharaiah DS, Cserhati MF, Casero D, Weeks DP et al. (2012) Activation of the Carbon Concentrating Mechanism by CO2 Deprivation Coincides with Massive Transcriptional Restructuring in Chlamydomonas reinhardtii. Plant Cell 24: 1860-1875. doi:10.1105/tpc.111.093435. PubMed: 22634764.
-
(2012)
Plant Cell
, vol.24
, pp. 1860-1875
-
-
Brueggeman, A.J.1
Gangadharaiah, D.S.2
Cserhati, M.F.3
Casero, D.4
Weeks, D.P.5
-
27
-
-
77952335828
-
Structure of the histone chaperone CIA/ASF1-double bromodomain complex linking histone modifications and site-specific histone eviction
-
doi:10.1073/pnas.0912509107.PubMed: 20393127
-
Akai Y, Adachi N, Hayashi Y, Eitoku M, Sano N et al. (2010) Structure of the histone chaperone CIA/ASF1-double bromodomain complex linking histone modifications and site-specific histone eviction. Proc Natl Acad Sci U S A 107: 8153-8158. doi:10.1073/pnas.0912509107.PubMed: 20393127.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 8153-8158
-
-
Akai, Y.1
Adachi, N.2
Hayashi, Y.3
Eitoku, M.4
Sano, N.5
-
28
-
-
0017167883
-
Activation of chromatin by acetylation of histone side chains
-
doi:10.1073/pnas.73.11.3937. PubMed: 1069278
-
Marushige K (1976) Activation of chromatin by acetylation of histone side chains. Proc Natl Acad Sci U S A 73: 3937-3941. doi:10.1073/pnas.73.11.3937. PubMed: 1069278.
-
(1976)
Proc Natl Acad Sci U S A
, vol.73
, pp. 3937-3941
-
-
Marushige, K.1
-
29
-
-
77957364223
-
Interplay of bromodomain and histone acetylation in the regulation of p300-dependent genes
-
doi:10.4161/epi.5.6.12224. PubMed: 20505343
-
Chen J, Ghazawi FM, Li Q (2010) Interplay of bromodomain and histone acetylation in the regulation of p300-dependent genes. Epigenetics 5: 509-515. doi:10.4161/epi.5.6.12224. PubMed: 20505343.
-
(2010)
Epigenetics
, vol.5
, pp. 509-515
-
-
Chen, J.1
Ghazawi, F.M.2
Li, Q.3
-
30
-
-
0031015217
-
CspA, the major cold-shock protein of Escherichia coli, is an RNA chaperone
-
doi:10.1074/jbc.272.1.196. PubMed: 8995247
-
Jiang W, Hou Y, Inouye M (1997) CspA, the major cold-shock protein of Escherichia coli, is an RNA chaperone. J Biol Chem 272: 196-202. doi:10.1074/jbc.272.1.196. PubMed: 8995247.
-
(1997)
J Biol Chem
, vol.272
, pp. 196-202
-
-
Jiang, W.1
Hou, Y.2
Inouye, M.3
-
31
-
-
75549087883
-
PlnTFDB: Updated content and new features of the plant transcription factor database
-
PubMed: 19858103
-
Pérez-Rodríguez P, Riaño-Pachón DM, Corrêa LG, Rensing SA, Kersten B et al. (2010) PlnTFDB: updated content and new features of the plant transcription factor database. Nucleic Acids Res 38: D822-D827. PubMed: 19858103.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Pérez-Rodríguez, P.1
Riaño-Pachón, D.M.2
Corrêa, L.G.3
Rensing, S.A.4
Kersten, B.5
-
32
-
-
0031658803
-
A superfamily of proteins that contain the cold-shock domain
-
doi: 10.1016/S0968-0004(98)01255-9. PubMed: 9757828
-
Graumann PL, Marahiel MA (1998) A superfamily of proteins that contain the cold-shock domain. Trends Biochem Sci 23: 286-290. doi: 10.1016/S0968- 0004(98)01255-9. PubMed: 9757828.
-
(1998)
Trends Biochem Sci
, vol.23
, pp. 286-290
-
-
Graumann, P.L.1
Marahiel, M.A.2
-
33
-
-
0037253256
-
Conservation of the cold shock domain protein family in plants
-
doi:10.1104/pp.014472. PubMed: 12529510
-
Karlson D, Imai R (2003) Conservation of the cold shock domain protein family in plants. Plant Physiol 131: 12-15. doi:10.1104/pp.014472. PubMed: 12529510.
-
(2003)
Plant Physiol
, vol.131
, pp. 12-15
-
-
Karlson, D.1
Imai, R.2
-
34
-
-
33846907791
-
Cold shock domain proteins and glycine-rich RNA-binding proteins from Arabidopsis thaliana can promote the cold adaptation process in Escherichia coli
-
doi:10.1093/nar/gkl818. PubMed: 17169986
-
Kim JS, Park SJ, Kwak KJ, Kim YO, Kim JY et al. (2007) Cold shock domain proteins and glycine-rich RNA-binding proteins from Arabidopsis thaliana can promote the cold adaptation process in Escherichia coli. Nucleic Acids Res 35: 506-516. doi:10.1093/nar/gkl818. PubMed: 17169986.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 506-516
-
-
Kim, J.S.1
Park, S.J.2
Kwak, K.J.3
Kim, Y.O.4
Kim, J.Y.5
-
35
-
-
0031081131
-
MYB transcription factors in plants
-
doi:10.1016/S0168-9525(96)10049-4. PubMed: 9055608
-
Martin C, Paz-Ares J (1997) MYB transcription factors in plants. Trends Genet 13: 67-73. doi:10.1016/S0168-9525(96)10049-4. PubMed: 9055608.
-
(1997)
Trends Genet
, vol.13
, pp. 67-73
-
-
Martin, C.1
Paz-Ares, J.2
-
36
-
-
35648965695
-
Increased expression of the MYB-related transcription factor, PHR1, leads to enhanced phosphate uptake in Arabidopsis thaliana
-
doi:10.1111/j.1365-3040.2007.01734.x. PubMed: 17927693
-
Nilsson L, Müller R, Nielsen TH (2007) Increased expression of the MYB-related transcription factor, PHR1, leads to enhanced phosphate uptake in Arabidopsis thaliana. Plant Cell Environ 30: 1499-1512. doi:10.1111/j.1365-3040. 2007.01734.x. PubMed: 17927693.
-
(2007)
Plant Cell Environ
, vol.30
, pp. 1499-1512
-
-
Nilsson, L.1
Müller, R.2
Nielsen, T.H.3
-
37
-
-
62549101686
-
Genetic interactions between regulators of Chlamydomonas phosphorus and sulfur deprivation responses
-
doi:10.1534/genetics.108.099382. PubMed: 19087952
-
Moseley JL, Gonzalez-Ballester D, Pootakham W, Bailey S, Grossman AR (2009) Genetic interactions between regulators of Chlamydomonas phosphorus and sulfur deprivation responses. Genetics 181: 889-905. doi:10.1534/genetics.108. 099382. PubMed: 19087952.
-
(2009)
Genetics
, vol.181
, pp. 889-905
-
-
Moseley, J.L.1
Gonzalez-Ballester, D.2
Pootakham, W.3
Bailey, S.4
Grossman, A.R.5
-
38
-
-
33748143367
-
Could heat shock transcription factors function as hydrogen peroxide sensors in plants?
-
doi: 10.1093/aob/mcl107. PubMed: 16740587
-
Miller G, Mittler R (2006) Could heat shock transcription factors function as hydrogen peroxide sensors in plants? Ann Bot 98: 279-288. doi: 10.1093/aob/mcl107. PubMed: 16740587.
-
(2006)
Ann Bot
, vol.98
, pp. 279-288
-
-
Miller, G.1
Mittler, R.2
-
39
-
-
35148813020
-
Heat shock factor 1 is a key regulator of the stress response in Chlamydomonas
-
doi:10.1111/j.1365-313X.2007.03228.x. PubMed: 17711413
-
Schulz-Raffelt M, Lodha M, Schroda M (2007) Heat shock factor 1 is a key regulator of the stress response in Chlamydomonas. Plant J 52: 286-295. doi:10.1111/j.1365-313X.2007.03228.x. PubMed: 17711413.
-
(2007)
Plant J
, vol.52
, pp. 286-295
-
-
Schulz-Raffelt, M.1
Lodha, M.2
Schroda, M.3
-
40
-
-
79960888467
-
Transcription factor-dependent chromatin remodeling at heat shock and copper-responsive promoters in Chlamydomonas reinhardtii
-
doi:10.1105/tpc.111.085266. PubMed: 21705643
-
Strenkert D, Schmollinger S, Sommer F, Schulz-Raffelt M, Schroda M (2011) Transcription factor-dependent chromatin remodeling at heat shock and copper-responsive promoters in Chlamydomonas reinhardtii. Plant Cell 23: 2285-2301. doi:10.1105/tpc.111.085266. PubMed: 21705643.
-
(2011)
Plant Cell
, vol.23
, pp. 2285-2301
-
-
Strenkert, D.1
Schmollinger, S.2
Sommer, F.3
Schulz-Raffelt, M.4
Schroda, M.5
-
41
-
-
0037424263
-
Dynamic chromatin alterations triggered by natural and synthetic activation domains
-
doi:10.1074/jbc.M211703200. PubMed: 12499367
-
Erkine AM, Gross DS (2003) Dynamic chromatin alterations triggered by natural and synthetic activation domains. J Biol Chem 278: 7755-7764. doi:10.1074/jbc.M211703200. PubMed: 12499367.
-
(2003)
J Biol Chem
, vol.278
, pp. 7755-7764
-
-
Erkine, A.M.1
Gross, D.S.2
-
42
-
-
0037334946
-
Rad54 protein possesses chromatin-remodeling activity stimulated by the Rad51-ssDNA nucleoprotein filament
-
doi:10.1038/nsb901. PubMed: 12577053
-
Alexeev A, Mazin A, Kowalczykowski SC (2003) Rad54 protein possesses chromatin-remodeling activity stimulated by the Rad51-ssDNA nucleoprotein filament. Nat Struct Biol 10: 182-186. doi:10.1038/nsb901. PubMed: 12577053.
-
(2003)
Nat Struct Biol
, vol.10
, pp. 182-186
-
-
Alexeev, A.1
Mazin, A.2
Kowalczykowski, S.C.3
-
43
-
-
76749102971
-
Rad54, the motor of homologous recombination
-
doi:10.1016/j.dnarep.2009.12.006. PubMed: 20089461
-
Mazin AV, Mazina OM, Bugreev DV, Rossi MJ (2010) Rad54, the motor of homologous recombination. DNA Repair (Amst) 9: 286-302. doi:10.1016/j.dnarep. 2009.12.006. PubMed: 20089461.
-
(2010)
DNA Repair (Amst)
, vol.9
, pp. 286-302
-
-
Mazin, A.V.1
Mazina, O.M.2
Bugreev, D.V.3
Rossi, M.J.4
-
44
-
-
45849091166
-
Functional conservation of the yeast and Arabidopsis RAD54-like genes
-
doi:10.1534/genetics.108.086777. PubMed: 18430956
-
Klutstein M, Shaked H, Sherman A, Avivi-Ragolsky N, Shema E et al. (2008) Functional conservation of the yeast and Arabidopsis RAD54-like genes. Genetics 178: 2389-2397. doi:10.1534/genetics.108.086777. PubMed: 18430956.
-
(2008)
Genetics
, vol.178
, pp. 2389-2397
-
-
Klutstein, M.1
Shaked, H.2
Sherman, A.3
Avivi-Ragolsky, N.4
Shema, E.5
-
45
-
-
57749111976
-
Eleven golden rules of quantitative RT-PCR
-
doi:10.1105/tpc.108.061143. PubMed: 18664613
-
Udvardi MK, Czechowski T, Scheible WR (2008) Eleven golden rules of quantitative RT-PCR. Plant Cell 20: 1736-1737. doi:10.1105/tpc.108.061143. PubMed: 18664613.
-
(2008)
Plant Cell
, vol.20
, pp. 1736-1737
-
-
Udvardi, M.K.1
Czechowski, T.2
Scheible, W.R.3
-
46
-
-
58149307466
-
QuantPrime-a flexible tool for reliable high-throughput primer design for quantitative PCR
-
doi:10.1186/1471-2105-9-465. PubMed: 18976492
-
Arvidsson S, Kwasniewski M, Riaño-Pachón DM, Mueller-Roeber B (2008) QuantPrime-a flexible tool for reliable high-throughput primer design for quantitative PCR. BMC Bioinformatics 9: 465. doi:10.1186/1471-2105-9-465. PubMed: 18976492.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 465
-
-
Arvidsson, S.1
Kwasniewski, M.2
Riaño-Pachón, D.M.3
Mueller-Roeber, B.4
-
47
-
-
34547176148
-
A quantitative RT-PCR platform for high-throughput expression profiling of 2500 rice transcription factors
-
doi:10.1186/1746-4811-3-7
-
Caldana C, Scheible WR, Mueller-Roeber B, Ruzicic S (2007) A quantitative RT-PCR platform for high-throughput expression profiling of 2500 rice transcription factors. Plants Methods 3: 7. doi:10.1186/1746-4811-3-7.
-
(2007)
Plants Methods
, vol.3
, pp. 7
-
-
Caldana, C.1
Scheible, W.R.2
Mueller-Roeber, B.3
Ruzicic, S.4
-
48
-
-
0037435395
-
Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data
-
doi:10.1016/S0304-3940(02)01423-4. PubMed: 12618301
-
Ramakers C, Ruijter JM, Deprez RH, Moorman AF (2003) Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data. Neurosci Lett 339: 62-66. doi:10.1016/S0304-3940(02)01423-4. PubMed: 12618301.
-
(2003)
Neurosci Lett
, vol.339
, pp. 62-66
-
-
Ramakers, C.1
Ruijter, J.M.2
Deprez, R.H.3
Moorman, A.F.4
-
49
-
-
65549139459
-
Data-driven normalization strategies for high-throughput quantitative RT-PCR
-
doi:10.1186/1471-2105-10-110. PubMed: 19374774
-
Mar JC, Kimura Y, Schroder K, Irvine KM, Hayashizaki Y et al. (2009) Data-driven normalization strategies for high-throughput quantitative RT-PCR. BMC Bioinformatics 10: 110. doi:10.1186/1471-2105-10-110. PubMed: 19374774.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 110
-
-
Mar, J.C.1
Kimura, Y.2
Schroder, K.3
Irvine, K.M.4
Hayashizaki, Y.5
-
50
-
-
33747894577
-
TM4 microarray software suite
-
doi:10.1016/S0076-6879(06)11009-5. PubMed: 16939790
-
Saeed AI, Bhagabati NK, Braisted JC, Liang W, Sharov V et al. (2006) TM4 microarray software suite. Methods Enzymol 411: 134-193. doi:10.1016/S0076- 6879(06)11009-5. PubMed: 16939790.
-
(2006)
Methods Enzymol
, vol.411
, pp. 134-193
-
-
Saeed, A.I.1
Bhagabati, N.K.2
Braisted, J.C.3
Liang, W.4
Sharov, V.5
-
51
-
-
67649524640
-
Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements)
-
doi:10.1016/j.ymeth.2009.03.003. PubMed: 19303047
-
Giresi PG, Lieb JD (2009) Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements). Methods 48: 233-239. doi:10.1016/j.ymeth.2009.03.003. PubMed: 19303047.
-
(2009)
Methods
, vol.48
, pp. 233-239
-
-
Giresi, P.G.1
Lieb, J.D.2
-
52
-
-
0038652118
-
Genomewide demarcation of RNA polymerase II transcription units revealed by physical fractionation of chromatin
-
doi:10.1073/pnas.1131966100. PubMed: 12750471
-
Nagy PL, Cleary ML, Brown PO, Lieb JD (2003) Genomewide demarcation of RNA polymerase II transcription units revealed by physical fractionation of chromatin. Proc Natl Acad Sci U S A 100: 6364-6369. doi:10.1073/pnas.1131966100. PubMed: 12750471.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 6364-6369
-
-
Nagy, P.L.1
Cleary, M.L.2
Brown, P.O.3
Lieb, J.D.4
-
53
-
-
66449105851
-
Tissue- and expression level-specific chromatin looping at maize b1 epialleles
-
doi:10.1105/tpc.108.064329. PubMed: 19336692
-
Louwers M, Bader R, Haring M, van Driel R, de Laat W et al. (2009) Tissue- and expression level-specific chromatin looping at maize b1 epialleles. Plant Cell 21: 832-842. doi:10.1105/tpc.108.064329. PubMed: 19336692.
-
(2009)
Plant Cell
, vol.21
, pp. 832-842
-
-
Louwers, M.1
Bader, R.2
Haring, M.3
Van Driel, R.4
De Laat, W.5
-
54
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
doi:10.1186/gb-2009-10-3-r25. PubMed: 19261174
-
Langmead B, Trapnell C, Pop M, Salzberg SL (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25. doi:10.1186/gb-2009-10-3-r25. PubMed: 19261174.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
55
-
-
84891407150
-
Data-driven reconstruction of directed networks
-
doi:10.1140/epjb/e2013-31111-8
-
Hempel S, Koseska A, Nikoloski Z (2013) Data-driven reconstruction of directed networks. Eur Phys J B 86: 250. doi:10.1140/epjb/e2013-31111-8.
-
(2013)
Eur Phys J B
, vol.86
, pp. 250
-
-
Hempel, S.1
Koseska, A.2
Nikoloski, Z.3
-
56
-
-
33747823564
-
MEME: Discovering and analyzing DNA and protein sequence motifs
-
doi:10.1093/nar/gkl198. PubMed: 16845028
-
Bailey TL, Williams N, Misleh C, Li WW (2006) MEME: discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res 34: W369-W373. doi:10.1093/nar/gkl198. PubMed: 16845028.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Bailey, T.L.1
Williams, N.2
Misleh, C.3
Li, W.W.4
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