Dynamic chromatin alterations triggered by natural and synthetic activation domains

Journal of Biological Chemistry

Volumn 278, Issue 10, 2003, Pages 7755-7764

  Erkine, Alexander M ^a   Gross, David S ^b  

^a LOUISIANA STATE UNIVERSITY HEALTH SCIENCES CENTER   (United States)

^b NONE

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; DNA; ENZYMES; GENES; POLYPEPTIDES;

ACTIVATION DOMAINS (AD);

BIOCHEMISTRY;

AMINO ACID; DNA; HEAT SHOCK PROTEIN; HISTONE; HISTONE H2A; HISTONE H3; HISTONE H4; PRIMER DNA; TRANSCRIPTION FACTOR;

ACIDITY; ARTICLE; CARBOXY TERMINAL SEQUENCE; CHROMATIN STRUCTURE; GENE CONTROL; GENE DELETION; GENETIC TRANSCRIPTION; HYDROPHOBICITY; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DNA BINDING; PROTEIN DOMAIN; PROTEIN PROTEIN INTERACTION; SACCHAROMYCES CEREVISIAE; TEMPERATURE SENSITIVITY; TRANSACTIVATION; TRANSCRIPTION INITIATION; AMINO ACID SEQUENCE; CHEMISTRY; CHROMATIN; GENETICS; METABOLISM; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; PLASMID;

SACCHAROMYCES CEREVISIAE;

AMINO ACID SEQUENCE; BASE SEQUENCE; BLOTTING, NORTHERN; CHROMATIN; DNA PRIMERS; HEAT-SHOCK PROTEINS; HISTONES; PLASMIDS; PROMOTER REGIONS (GENETICS); SACCHAROMYCES CEREVISIAE; TRANSCRIPTION FACTORS;

EID: 0037424263     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M211703200     Document Type: Article

References (69)

1. Ptashne, M., and Gann, A. (1997) Nature 386, 569-577
2. Struhl, K. (1999) Cell 98, 1-4
3. Kingston, R. E., and Narlikar, G. J. (1999) Genes Dev. 13, 2339-2352
4. Strahl, B. D., and Allis, C. D. (2000) Nature 403, 41-45
5. Brown, C. E., Lechner, T., Howe, L., and Workman, J. L. (2000) Trends Biochem. Sci. 25, 15-19
6. Naar, A. M., Lemon, B. D., and Tjian, R. (2001) Annu. Rev. Biochem. 70, 475-501
7. Koh, S. S., Ansari, A. Z., Ptashne, M., and Young, R. A. (1998) Mol. Cell 1, 895-904
8. Neely, K. E., Hassan, A. H., Wallberg, A. E., Steger, D. J., Cairns, B. R., Wright, A. P., and Workman, J. L. (1999) Mol. Cell 4, 649-655
9. Natarajan, K., Jackson, B. M., Zhou, H., Winston, F., and Hinnebusch, A. G. (1999) Mol. Cell 4, 657-664
10. Utley, R. T., Ikeda, K., Grant, P. A., Cote, J., Steger, D. J., Eberharter, A., John, S., and Workman, J. L. (1998) Nature 394, 498-502
11. Neely, K. E., Hassan, A. H., Brown, C. E., Howe, L., and Workman, J. L. (2002) Mol. Cell. Biol. 22, 1615-1625
12. Brown, C. E., Howe, L., Sousa, K., Alley, S. C., Carrozza, M. J., Tan, S., and Workman, J. L. (2001) Science 292, 2333-2337
13. Cosma, M. P., Tanaka, T., and Nasmyth, K. (1999) Cell 97, 299-311
14. Krebs, J. E., Fry, C. J., Samuels, M. L., and Peterson, C. L. (2000) Cell 102, 587-598
15. Agalioti, T., Lomvardas, S., Parekh, B., Yie, J., Maniatis, T., and Thanos, D. (2000) Cell 103, 667-678
16. Triezenberg, S. J. (1995) Curr. Opin. Genet. Dev. 5, 190-196
17. Uesugi, M., Nyanguile, O., Lu, H., Levine, A. J., and Verdine, G. L. (1997) Science 277, 1310-1313
18. Cho, H. S., Liu, C. W., Damberger, F. F., Pelton, J. G., Nelson, H. C., and Wemmer, D. E. (1996) Protein Sci. 5, 262-269
19. Bhaumik, S. R., and Green, M. R. (2001) Genes Dev. 15, 1935-1945
20. Larschan, E., and Winston, F. (2001) Genes Dev. 15, 1946-1956
21. Gross, D. S., Adams, C. C., Lee, S., and Stentz, B. (1993) EMBO J. 12, 3931-3945
22. Erkine, A. M., Adams, C. C., Diken, T., and Gross, D. S. (1996) Mol. Cell. Biol. 16, 7004-7017
23. Sorger, P. K. (1990) Cell 62, 793-805
24. Nieto-Sotelo, J., Wiederrecht, G., Okuda, A., and Parker, C. S. (1990) Cell 62, 807-817
25. Apone, L. M., Virbasius, C. A., Holstege, F. C., Wang, J., Young, R. A., and Green, M. R. (1998) Mol. Cell 2, 653-661
26. Lee, D., and Lis, J. T. (1998) Nature 393, 389-392
27. Lee, D. K., Kim, S., and Lis, J. T. (1999) Genes Dev. 13, 2934-2939
28. McNeil, J. B., Agah, H., and Bentley, D. (1998) Genes Dev. 12, 2510-2521
29. Moqtaderi, Z., Keaveney, M., and Struhl, K. (1998) Mol. Cell 2, 675-682
30. Chou, S., Chatterjee, S., Lee, M., and Struhl, K. (1999) Genetics 153, 1573-1581
31. James, P., Halladay, J., and Craig, E. A. (1996) Genetics 144, 1425-1436
32. Sekinger, E. A., and Gross, D. S. (2001) Cell 105, 403-414
33. Erkine, A. M., Magrogan, S. F., Sekinger, E. A., and Gross, D. S. (1999) Mol. Cell. Biol. 19, 1627-1639
34. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A., and Struhl, K. (1995) Current Protocols in Molecular Biology, pp. 13.6.2-13.6.4, John Wiley & Sons, Inc., New York
35. Szent-Gyorgyi, C., Finkelstein, D. B., and Garrard, W. T. (1987) J. Mol. Biol. 193, 71-80
36. Erkine, A. M., Adams, C. C., Gao, M., and Gross, D. S. (1995) Nucleic Acids Res. 23, 1822-1829
37. Chen, J., and Pederson, D. S. (1993) J. Biol. Chem. 268, 7442-7448
38. Deckert, J., and Struhl, K. (2001) Mol. Cell. Biol. 21, 2726-2735
39. Almer, A., Rudolph, H., Hinnen, A., and Horz, W. (1986) EMBO J. 5, 2689-2696
40. Svaren, J., and Horz, W. (1997) Trends Biochem. Sci. 22, 93-97
41. Young, M. R., and Craig, E. A. (1993) Mol. Cell. Biol. 13, 5637-5646
42. Morano, K. A., Santoro, N., Koch, K. A., and Thiele, D. J. (1999) Mol. Cell. Biol. 19, 402-411
43. Bonner, J. J., Heyward, S., and Fackenthal, D. L. (1992) Mol. Cell. Biol. 12, 1021-1030
44. Ma, J., and Ptashne, M. (1987) Cell 51, 113-119
45. Lu, X., Ansari, A. Z., and Ptashne, M. (2000) Proc. Natl. Acad. Sci. U. S. A. 97, 1988-1992
46. Alevizopoulos, A., Dusserre, Y., Tsai-Pflugfelder, M., von der Weid, T., Wahli, W., and Mermod, N. (1995) Genes Dev. 9, 3051-3066
47. Ha, N., Hellauer, K., and Turcotte, B. (2000) Nucleic Acids Res. 28, 1026-1035
48. Cirillo, L. A., Lin, F. R., Cuesta, I., Friedman, D., Jarnik, M., and Zaret, K. S. (2002) Mol. Cell 9, 279-289
49. Ruden, D. M., Ma, J., Li, Y., Wood, K., and Ptashne, M. (1991) Nature 350, 250-252
50. Altmann, H., Wendler, W., and Winnacker, E. L. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 3901-3905
51. Wenzelides, S., Altmann, H., Wendler, W., and Winnacker, E. L. (1996) Nucleic Acids Res. 24, 2416-2421
52. Gerber, H. P., Seipel, K., Georgiev, O., Hofferer, M., Hug, M., Rusconi, S., and Schaffner, W. (1994) Science 263, 808-811
53. Nyanguile, O., Uesugi, M., Austin, D. J., and Verdine, G. L. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 13402-13406
54. Vogelauer, M., Wu, J., Suka, N., and Grunstein, M. (2000) Nature 408, 495-498
55. Reid, J. L., Iyer, V. R., Brown, P. O., and Struhl, K. (2000) Mol. Cell 6, 1297-1307
56. Katan-Khaykovich, Y., and Struhl, K. (2002) Genes Dev. 16, 743-752
57. Logie, C., and Peterson, C. L. (1997) EMBO J. 16, 6772-6782
58. Hassan, A. H., Neely, K. E., and Workman, J. L. (2001) Cell 104, 817-827
59. Luger, K., Mader, A. W., Richmond, R. K., Sargent, D. F., and Richmond, T. J. (1997) Nature 389, 251-260
60. Birck, C., Poch, O., Romier, C., Ruff, M., Mengus, G., Lavigne, A. C., Davidson, I., and Moras, D. (1998) Cell 94, 239-249
61. Ogryzko, V. V., Kotani, T., Zhang, X., Schlitz, R. L., Howard, T., Yang, X. J., Howard, B. H., Qin, J., and Nakatani, Y. (1998) Cell 94, 35-44
62. Poot, R. A., Dellaire, G., Hulsmann, B. B., Grimaldi, M. A., Corona, D. F., Becker, P. B., Bickmore, W. A., and Varga-Weisz, P. D. (2000) EMBO J. 19, 3377-3387
63. Corona, D. F., Eberharter, A., Budde, A., Deuring, R., Ferrari, S., Varga-Weisz, P., Wilm, M., Tamkun, J., and Becker, P. B. (2000) EMBO J. 19, 3049-3059
64. Klemm, R. D., Goodrich, J. A., Zhou, S., and Tjian, R. (1995) Proc. Natl. Acad. Sci. U. S. A. 92, 5788-5792
65. Flick, K. E., Gonzalez, L., Jr., Harrison, C. J., and Nelson, H. C. (1994) J. Biol. Chem. 269, 12475-12481
66. Hoj, A., and Jakobsen, B. K. (1994) EMBO J. 13, 2617-2624
67. Harrison, C. J., Bohm, A. A., and Nelson, H. C. (1994) Science 263, 224-227
68. Sorger, P. K., and Nelson, H. C. (1989) Cell 59, 807-813
69. Johnston, M. (1999) Trends Genet. 15, 29-33