-
1
-
-
0014945567
-
The lac repressor-operator interaction. 3. Kinetic studies
-
A.D. Riggs, S. Bourgeois, and M. Cohn The lac repressor-operator interaction. 3. Kinetic studies J Mol Biol 53 1970 401 417
-
(1970)
J Mol Biol
, vol.53
, pp. 401-417
-
-
Riggs, A.D.1
Bourgeois, S.2
Cohn, M.3
-
2
-
-
0036789619
-
Physics of protein-DNA interaction
-
R.F. Bruinsma Physics of protein-DNA interaction Physica A 313 2002 211 237
-
(2002)
Physica A
, vol.313
, pp. 211-237
-
-
Bruinsma, R.F.1
-
3
-
-
49449107340
-
Visualizing one-dimensional diffusion of proteins along DNA
-
J. Gorman, and E.C. Greene Visualizing one-dimensional diffusion of proteins along DNA Nat Struct Mol Biol 15 2008 768 774
-
(2008)
Nat Struct Mol Biol
, vol.15
, pp. 768-774
-
-
Gorman, J.1
Greene, E.C.2
-
4
-
-
65549171477
-
An end to 40 years of mistakes in DNA-protein association kinetics?
-
S.E. Halford An end to 40 years of mistakes in DNA-protein association kinetics? Biochem Soc Trans 37 2009 343 348
-
(2009)
Biochem Soc Trans
, vol.37
, pp. 343-348
-
-
Halford, S.E.1
-
5
-
-
3042579602
-
How do site-specific DNA-binding proteins find their targets?
-
S.E. Halford, and J.F. Marko How do site-specific DNA-binding proteins find their targets? Nucleic Acids Res 32 2004 3040 3052
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 3040-3052
-
-
Halford, S.E.1
Marko, J.F.2
-
6
-
-
79251584676
-
Physics of protein-DNA interactions: Mechanisms of facilitated target search
-
A.B. Kolomeisky Physics of protein-DNA interactions: mechanisms of facilitated target search Phys Chem Chem Phys 13 2011 2088 2095
-
(2011)
Phys Chem Chem Phys
, vol.13
, pp. 2088-2095
-
-
Kolomeisky, A.B.1
-
7
-
-
72149127671
-
How a protein searches for its site on DNA: The mechanism of facilitated diffusion
-
L. Mirny, M. Slutsky, Z. Wunderlich, A. Tafvizi, J. Leith, and A. Kosmrlj How a protein searches for its site on DNA: the mechanism of facilitated diffusion J Phys A Math Theor 42 2009 401335
-
(2009)
J Phys A Math Theor
, vol.42
, pp. 401335
-
-
Mirny, L.1
Slutsky, M.2
Wunderlich, Z.3
Tafvizi, A.4
Leith, J.5
Kosmrlj, A.6
-
8
-
-
79957549084
-
Dancing on DNA: Kinetic aspects of search processes on DNA
-
A. Tafvizi, L.A. Mirny, and A.M. van Oijen Dancing on DNA: kinetic aspects of search processes on DNA ChemPhysChem 12 2011 1481 1489
-
(2011)
ChemPhysChem
, vol.12
, pp. 1481-1489
-
-
Tafvizi, A.1
Mirny, L.A.2
Van Oijen, A.M.3
-
9
-
-
0024531901
-
Facilitated target location in biological systems
-
P.H. von Hippel, and O.G. Berg Facilitated target location in biological systems J Biol Chem 264 1989 675 678
-
(1989)
J Biol Chem
, vol.264
, pp. 675-678
-
-
Von Hippel, P.H.1
Berg, O.G.2
-
10
-
-
0019887628
-
Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory
-
O.G. Berg, R.B. Winter, and P.H. von Hippel Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory Biochemistry 20 1981 6929 6948
-
(1981)
Biochemistry
, vol.20
, pp. 6929-6948
-
-
Berg, O.G.1
Winter, R.B.2
Von Hippel, P.H.3
-
11
-
-
71449094444
-
Nonspecifically bound proteins spin while diffusing along DNA
-
P.C. Blainey, G. Luo, S.C. Kou, W.F. Mangel, G.L. Verdine, and B. Bagchi et al. Nonspecifically bound proteins spin while diffusing along DNA Nat Struct Mol Biol 16 2009 1224 1229
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 1224-1229
-
-
Blainey, P.C.1
Luo, G.2
Kou, S.C.3
Mangel, W.F.4
Verdine, G.L.5
Bagchi, B.6
-
12
-
-
33645807371
-
A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA
-
P.C. Blainey, A.M. van Oijen, A. Banerjee, G.L. Verdine, and X.S. Xie A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA Proc Natl Acad Sci USA 103 2006 5752 5757
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 5752-5757
-
-
Blainey, P.C.1
Van Oijen, A.M.2
Banerjee, A.3
Verdine, G.L.4
Xie, X.S.5
-
13
-
-
78650307167
-
Single-molecule imaging reveals mechanisms of protein disruption by a DNA translocase
-
I.J. Finkelstein, M.L. Visnapuu, and E.C. Greene Single-molecule imaging reveals mechanisms of protein disruption by a DNA translocase Nature 468 2010 983 987
-
(2010)
Nature
, vol.468
, pp. 983-987
-
-
Finkelstein, I.J.1
Visnapuu, M.L.2
Greene, E.C.3
-
14
-
-
84868514786
-
Single-molecule imaging reveals target-search mechanisms during DNA mismatch repair
-
J. Gorman, F. Wang, S. Redding, A.J. Plys, T. Fazio, and S. Wind et al. Single-molecule imaging reveals target-search mechanisms during DNA mismatch repair Proc Natl Acad Sci USA 109 2012 E3074 E3083
-
(2012)
Proc Natl Acad Sci USA
, vol.109
-
-
Gorman, J.1
Wang, F.2
Redding, S.3
Plys, A.J.4
Fazio, T.5
Wind, S.6
-
15
-
-
84862624197
-
The lac repressor displays facilitated diffusion in living cells
-
P. Hammar, P. Leroy, A. Mahmutovic, E.G. Marklund, O.G. Berg, and J. Elf The lac repressor displays facilitated diffusion in living cells Science 336 2012 1595 1598
-
(2012)
Science
, vol.336
, pp. 1595-1598
-
-
Hammar, P.1
Leroy, P.2
Mahmutovic, A.3
Marklund, E.G.4
Berg, O.G.5
Elf, J.6
-
16
-
-
84867351024
-
Sequence-dependent sliding kinetics of p53
-
J.S. Leith, A. Tafvizi, F. Huang, W.E. Uspal, P.S. Doyle, and A.R. Fersht et al. Sequence-dependent sliding kinetics of p53 Proc Natl Acad Sci USA 109 2012 16552 16557
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 16552-16557
-
-
Leith, J.S.1
Tafvizi, A.2
Huang, F.3
Uspal, W.E.4
Doyle, P.S.5
Fersht, A.R.6
-
17
-
-
79952259642
-
A single-molecule characterization of p53 search on DNA
-
A. Tafvizi, F. Huang, A.R. Fersht, L.A. Mirny, and A.M. van Oijen A single-molecule characterization of p53 search on DNA Proc Natl Acad Sci USA 108 2011 563 568
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 563-568
-
-
Tafvizi, A.1
Huang, F.2
Fersht, A.R.3
Mirny, L.A.4
Van Oijen, A.M.5
-
18
-
-
27644460480
-
Measurement of the contributions of 1D and 3D pathways to the translocation of a protein along DNA
-
D.M. Gowers, G.G. Wilson, and S.E. Halford Measurement of the contributions of 1D and 3D pathways to the translocation of a protein along DNA Proc Natl Acad Sci USA 102 2005 15883 15888
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 15883-15888
-
-
Gowers, D.M.1
Wilson, G.G.2
Halford, S.E.3
-
19
-
-
0020160863
-
Involvement of outside DNA sequences in the major kinetic path by which EcoRI endonuclease locates and leaves its recognition sequence
-
W.E. Jack, B.J. Terry, and P. Modrich Involvement of outside DNA sequences in the major kinetic path by which EcoRI endonuclease locates and leaves its recognition sequence Proc Natl Acad Sci USA 79 1982 4010 4014
-
(1982)
Proc Natl Acad Sci USA
, vol.79
, pp. 4010-4014
-
-
Jack, W.E.1
Terry, B.J.2
Modrich, P.3
-
20
-
-
0023645192
-
Kinetic studies on Cro repressor-operator DNA interaction
-
J.G. Kim, Y. Takeda, B.W. Matthews, and W.F. Anderson Kinetic studies on Cro repressor-operator DNA interaction J Mol Biol 196 1987 149 158
-
(1987)
J Mol Biol
, vol.196
, pp. 149-158
-
-
Kim, J.G.1
Takeda, Y.2
Matthews, B.W.3
Anderson, W.F.4
-
21
-
-
49449088997
-
Uracil DNA glycosylase uses DNA hopping and short-range sliding to trap extrahelical uracils
-
R.H. Porecha, and J.T. Stivers Uracil DNA glycosylase uses DNA hopping and short-range sliding to trap extrahelical uracils Proc Natl Acad Sci USA 105 2008 10791 10796
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 10791-10796
-
-
Porecha, R.H.1
Stivers, J.T.2
-
22
-
-
73149119125
-
Diffusion of the restriction nuclease EcoRI along DNA
-
D.C. Rau, and N.Y. Sidorova Diffusion of the restriction nuclease EcoRI along DNA J Mol Biol 395 2010 408 416
-
(2010)
J Mol Biol
, vol.395
, pp. 408-416
-
-
Rau, D.C.1
Sidorova, N.Y.2
-
23
-
-
84856117713
-
Timing facilitated site transfer of an enzyme on DNA
-
J.D. Schonhoft, and J.T. Stivers Timing facilitated site transfer of an enzyme on DNA Nat Chem Biol 8 2012 205 210
-
(2012)
Nat Chem Biol
, vol.8
, pp. 205-210
-
-
Schonhoft, J.D.1
Stivers, J.T.2
-
24
-
-
0034387984
-
One- and three-dimensional pathways for proteins to reach specific DNA sites
-
N.P. Stanford, M.D. Szczelkun, J.F. Marko, and S.E. Halford One- and three-dimensional pathways for proteins to reach specific DNA sites EMBO J 19 2000 6546 6557
-
(2000)
EMBO J
, vol.19
, pp. 6546-6557
-
-
Stanford, N.P.1
Szczelkun, M.D.2
Marko, J.F.3
Halford, S.E.4
-
25
-
-
0019867850
-
Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor-operator interaction: Kinetic measurements and conclusions
-
R.B. Winter, O.G. Berg, and P.H. von Hippel Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor-operator interaction: kinetic measurements and conclusions Biochemistry 20 1981 6961 6977
-
(1981)
Biochemistry
, vol.20
, pp. 6961-6977
-
-
Winter, R.B.1
Berg, O.G.2
Von Hippel, P.H.3
-
26
-
-
52949100201
-
Global jumping and domain-specific intersegment transfer between DNA cognate sites of the multidomain transcription factor Oct-1
-
M. Doucleff, and G.M. Clore Global jumping and domain-specific intersegment transfer between DNA cognate sites of the multidomain transcription factor Oct-1 Proc Natl Acad Sci USA 105 2008 13871 13876
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 13871-13876
-
-
Doucleff, M.1
Clore, G.M.2
-
27
-
-
0021342434
-
Kinetics and mechanism in the reaction of gene regulatory proteins with DNA
-
M.G. Fried, and D.M. Crothers Kinetics and mechanism in the reaction of gene regulatory proteins with DNA J Mol Biol 172 1984 263 282
-
(1984)
J Mol Biol
, vol.172
, pp. 263-282
-
-
Fried, M.G.1
Crothers, D.M.2
-
28
-
-
31544448614
-
Direct observation of enhanced translocation of a homeodomain between DNA cognate sites by NMR exchange spectroscopy
-
J. Iwahara, and G.M. Clore Direct observation of enhanced translocation of a homeodomain between DNA cognate sites by NMR exchange spectroscopy J Am Chem Soc 128 2006 404 405
-
(2006)
J Am Chem Soc
, vol.128
, pp. 404-405
-
-
Iwahara, J.1
Clore, G.M.2
-
29
-
-
33750078971
-
NMR structural and kinetic characterization of a homeodomain diffusing and hopping on nonspecific DNA
-
J. Iwahara, M. Zweckstetter, and G.M. Clore NMR structural and kinetic characterization of a homeodomain diffusing and hopping on nonspecific DNA Proc Natl Acad Sci USA 103 2006 15062 15067
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 15062-15067
-
-
Iwahara, J.1
Zweckstetter, M.2
Clore, G.M.3
-
30
-
-
0031012895
-
DNA intersegment transfer, how steroid receptors search for a target site
-
B.A. Lieberman, and S.K. Nordeen DNA intersegment transfer, how steroid receptors search for a target site J Biol Chem 272 1997 1061 1068
-
(1997)
J Biol Chem
, vol.272
, pp. 1061-1068
-
-
Lieberman, B.A.1
Nordeen, S.K.2
-
31
-
-
35848970780
-
TROSY-based z-exchange spectroscopy: Application to the determination of the activation energy for intermolecular protein translocation between specific sites on different DNA molecules
-
D. Sahu, G.M. Clore, and J. Iwahara TROSY-based z-exchange spectroscopy: application to the determination of the activation energy for intermolecular protein translocation between specific sites on different DNA molecules J Am Chem Soc 129 2007 13232 13237
-
(2007)
J Am Chem Soc
, vol.129
, pp. 13232-13237
-
-
Sahu, D.1
Clore, G.M.2
Iwahara, J.3
-
32
-
-
84877039993
-
DNA concentration-dependent dissociation of EcoRI: Direct transfer or reaction during hopping
-
N.Y. Sidorova, T. Scott, and D.C. Rau DNA concentration-dependent dissociation of EcoRI: direct transfer or reaction during hopping Biophys J 104 2013 1296 1303
-
(2013)
Biophys J
, vol.104
, pp. 1296-1303
-
-
Sidorova, N.Y.1
Scott, T.2
Rau, D.C.3
-
33
-
-
84860359548
-
Interplay between minor and major groove-binding transcription factors Sox2 and Oct1 in translocation on DNA studied by paramagnetic and diamagnetic NMR
-
Y. Takayama, and G.M. Clore Interplay between minor and major groove-binding transcription factors Sox2 and Oct1 in translocation on DNA studied by paramagnetic and diamagnetic NMR J Biol Chem 287 2012 14349 14363
-
(2012)
J Biol Chem
, vol.287
, pp. 14349-14363
-
-
Takayama, Y.1
Clore, G.M.2
-
34
-
-
84863003404
-
Asymmetrical roles of zinc fingers in dynamic DNA-scanning process by the inducible transcription factor Egr-1
-
L. Zandarashvili, D. Vuzman, A. Esadze, Y. Takayama, D. Sahu, Y. Levy, and J. Iwahara Asymmetrical roles of zinc fingers in dynamic DNA-scanning process by the inducible transcription factor Egr-1 Proc Natl Acad Sci USA 109 2012 E1724 E1732
-
(2012)
Proc Natl Acad Sci USA
, vol.109
-
-
Zandarashvili, L.1
Vuzman, D.2
Esadze, A.3
Takayama, Y.4
Sahu, D.5
Levy, Y.6
Iwahara, J.7
-
35
-
-
0242489171
-
A requirement for the immediate early gene zif268 in reconsolidation of recognition memory after retrieval
-
B. Bozon, S. Davis, and S. Laroche A requirement for the immediate early gene zif268 in reconsolidation of recognition memory after retrieval Neuron 40 2003 695 701
-
(2003)
Neuron
, vol.40
, pp. 695-701
-
-
Bozon, B.1
Davis, S.2
Laroche, S.3
-
36
-
-
2442507983
-
Independent cellular processes for hippocampal memory consolidation and reconsolidation
-
J.L. Lee, B.J. Everitt, and K.L. Thomas Independent cellular processes for hippocampal memory consolidation and reconsolidation Science 304 2004 839 843
-
(2004)
Science
, vol.304
, pp. 839-843
-
-
Lee, J.L.1
Everitt, B.J.2
Thomas, K.L.3
-
37
-
-
0029996110
-
Egr-1-induced endothelial gene expression: A common theme in vascular injury
-
L.M. Khachigian, V. Lindner, A.J. Williams, and T. Collins Egr-1-induced endothelial gene expression: a common theme in vascular injury Science 271 1996 1427 1431
-
(1996)
Science
, vol.271
, pp. 1427-1431
-
-
Khachigian, L.M.1
Lindner, V.2
Williams, A.J.3
Collins, T.4
-
38
-
-
0034533374
-
Egr-1, a master switch coordinating upregulation of divergent gene families underlying ischemic stress
-
S.F. Yan, T. Fujita, J. Lu, K. Okada, Y. Shan Zou, and N. Mackman et al. Egr-1, a master switch coordinating upregulation of divergent gene families underlying ischemic stress Nat Med 6 2000 1355 1361
-
(2000)
Nat Med
, vol.6
, pp. 1355-1361
-
-
Yan, S.F.1
Fujita, T.2
Lu, J.3
Okada, K.4
Shan Zou, Y.5
Mackman, N.6
-
39
-
-
0025773296
-
Zinc finger-DNA recognition: Crystal structure of a Zif268-DNA complex at 2.1 Å
-
N.P. Pavletich, and C.O. Pabo Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 Å Science 252 1991 809 817
-
(1991)
Science
, vol.252
, pp. 809-817
-
-
Pavletich, N.P.1
Pabo, C.O.2
-
40
-
-
84876568279
-
Take advantage of time in your experiments: A guide to simple, informative kinetics assays
-
T.D. Pollard, and E.M. De La Cruz Take advantage of time in your experiments: a guide to simple, informative kinetics assays Mol Biol Cell 24 2013 1103 1110
-
(2013)
Mol Biol Cell
, vol.24
, pp. 1103-1110
-
-
Pollard, T.D.1
De La Cruz, E.M.2
-
41
-
-
0016738438
-
DNA-ethidium reaction kinetics: Demonstration of direct ligand transfer between DNA binding sites
-
J.L. Bresloff, and D.M. Crothers DNA-ethidium reaction kinetics: demonstration of direct ligand transfer between DNA binding sites J Mol Biol 95 1975 103 123
-
(1975)
J Mol Biol
, vol.95
, pp. 103-123
-
-
Bresloff, J.L.1
Crothers, D.M.2
-
42
-
-
77956572160
-
NMR studies of translocation of the Zif268 protein between its target DNA sites
-
Y. Takayama, D. Sahu, and J. Iwahara NMR studies of translocation of the Zif268 protein between its target DNA sites Biochemistry 49 2010 7998 8005
-
(2010)
Biochemistry
, vol.49
, pp. 7998-8005
-
-
Takayama, Y.1
Sahu, D.2
Iwahara, J.3
-
43
-
-
84885135437
-
Speed-selectivity paradox in the protein search for targets on DNA: Is it real or not?
-
10.1021/jp311466f [Epub ahead of print]
-
A. Veksler, and A.B. Kolomeisky Speed-selectivity paradox in the protein search for targets on DNA: is it real or not? J Phys Chem B 2013 10.1021/jp311466f [Epub ahead of print]
-
(2013)
J Phys Chem B
-
-
Veksler, A.1
Kolomeisky, A.B.2
-
45
-
-
3142657230
-
Structure and flexibility adaptation in nonspecific and specific protein-DNA complexes
-
C.G. Kalodimos, N. Biris, A.M. Bonvin, M.M. Levandoski, M. Guennuegues, and R. Boelens et al. Structure and flexibility adaptation in nonspecific and specific protein-DNA complexes Science 305 2004 386 389
-
(2004)
Science
, vol.305
, pp. 386-389
-
-
Kalodimos, C.G.1
Biris, N.2
Bonvin, A.M.3
Levandoski, M.M.4
Guennuegues, M.5
Boelens, R.6
-
46
-
-
79959360942
-
Intra- and intermolecular translocation of the bi-domain transcription factor Oct1 characterized by liquid crystal and paramagnetic NMR
-
Y. Takayama, and G.M. Clore Intra- and intermolecular translocation of the bi-domain transcription factor Oct1 characterized by liquid crystal and paramagnetic NMR Proc Natl Acad Sci USA 108 2011 E169 E176
-
(2011)
Proc Natl Acad Sci USA
, vol.108
-
-
Takayama, Y.1
Clore, G.M.2
-
47
-
-
33645816459
-
How proteins search for their specific sites on DNA: The role of DNA conformation
-
T. Hu, A.Y. Grosberg, and B.I. Shklovskii How proteins search for their specific sites on DNA: the role of DNA conformation Biophys J 90 2006 2731 2744
-
(2006)
Biophys J
, vol.90
, pp. 2731-2744
-
-
Hu, T.1
Grosberg, A.Y.2
Shklovskii, B.I.3
-
48
-
-
0020123756
-
Association kinetics with coupled three- and one-dimensional diffusion. Chain-length dependence of the association rate of specific DNA sites
-
O.G. Berg, and M. Ehrenberg Association kinetics with coupled three- and one-dimensional diffusion. Chain-length dependence of the association rate of specific DNA sites Biophys Chem 15 1982 41 51
-
(1982)
Biophys Chem
, vol.15
, pp. 41-51
-
-
Berg, O.G.1
Ehrenberg, M.2
-
49
-
-
0022381905
-
Facilitated diffusion during catalysis by EcoRI endonuclease. Nonspecific interactions in EcoRI catalysis
-
B.J. Terry, W.E. Jack, and P. Modrich Facilitated diffusion during catalysis by EcoRI endonuclease. Nonspecific interactions in EcoRI catalysis J Biol Chem 260 1985 13130 13137
-
(1985)
J Biol Chem
, vol.260
, pp. 13130-13137
-
-
Terry, B.J.1
Jack, W.E.2
Modrich, P.3
-
50
-
-
21244475671
-
A model for the mediation of processivity of DNA-targeting proteins by nonspecific binding: Dependence on DNA length and presence of obstacles
-
H.X. Zhou A model for the mediation of processivity of DNA-targeting proteins by nonspecific binding: dependence on DNA length and presence of obstacles Biophys J 88 2005 1608 1615
-
(2005)
Biophys J
, vol.88
, pp. 1608-1615
-
-
Zhou, H.X.1
-
51
-
-
0015530179
-
Lac repressor binding to non-operator DNA: Detailed studies and a comparison of eequilibrium and rate competition methods
-
S.Y. Lin, and A.D. Riggs Lac repressor binding to non-operator DNA: detailed studies and a comparison of eequilibrium and rate competition methods J Mol Biol 72 1972 671 690
-
(1972)
J Mol Biol
, vol.72
, pp. 671-690
-
-
Lin, S.Y.1
Riggs, A.D.2
-
52
-
-
0017895903
-
Molecular theory of polyelectrolyte solutions with applications to electrostatic properties of polynucleotides
-
G.S. Manning Molecular theory of polyelectrolyte solutions with applications to electrostatic properties of polynucleotides Q Rev Biophys 11 1978 179 246
-
(1978)
Q Rev Biophys
, vol.11
, pp. 179-246
-
-
Manning, G.S.1
-
53
-
-
0017820499
-
Thermodynamic analysis of ion effects on binding and conformational equilibria of proteins and nucleic acids: Roles of ion association or release, screening, and ion effects on water activity
-
M.T. Record, C.F. Anderson, and T.M. Lohman Thermodynamic analysis of ion effects on binding and conformational equilibria of proteins and nucleic acids: roles of ion association or release, screening, and ion effects on water activity Q Rev Biophys 11 1978 103 178
-
(1978)
Q Rev Biophys
, vol.11
, pp. 103-178
-
-
Record, M.T.1
Anderson, C.F.2
Lohman, T.M.3
-
54
-
-
58249093392
-
Using fluorophore-labeled oligonucleotides to measure affinities of protein-DNA interactions
-
B.J. Anderson, C. Larkin, K. Guja, and J.F. Schildbach Using fluorophore-labeled oligonucleotides to measure affinities of protein-DNA interactions Methods Enzymol 450 2008 253 272
-
(2008)
Methods Enzymol
, vol.450
, pp. 253-272
-
-
Anderson, B.J.1
Larkin, C.2
Guja, K.3
Schildbach, J.F.4
-
56
-
-
33646356250
-
Detecting transient intermediates in macromolecular binding by paramagnetic NMR
-
J. Iwahara, and G.M. Clore Detecting transient intermediates in macromolecular binding by paramagnetic NMR Nature 440 2006 1227 1230
-
(2006)
Nature
, vol.440
, pp. 1227-1230
-
-
Iwahara, J.1
Clore, G.M.2
-
57
-
-
77949320402
-
Searching DNA via a "monkey Bar" mechanism: The significance of disordered tails
-
D. Vuzman, A. Azia, and Y. Levy Searching DNA via a "Monkey Bar" mechanism: the significance of disordered tails J Mol Biol 396 2010 674 684
-
(2010)
J Mol Biol
, vol.396
, pp. 674-684
-
-
Vuzman, D.1
Azia, A.2
Levy, Y.3
-
58
-
-
78650453629
-
DNA search efficiency is modulated by charge composition and distribution in the intrinsically disordered tail
-
D. Vuzman, and Y. Levy DNA search efficiency is modulated by charge composition and distribution in the intrinsically disordered tail Proc Natl Acad Sci USA 107 2010 21004 21009
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 21004-21009
-
-
Vuzman, D.1
Levy, Y.2
-
59
-
-
77958168396
-
Facilitated DNA search by multidomain transcription factors: Cross talk via a flexible linker
-
D. Vuzman, M. Polonsky, and Y. Levy Facilitated DNA search by multidomain transcription factors: cross talk via a flexible linker Biophys J 99 2010 1202 1211
-
(2010)
Biophys J
, vol.99
, pp. 1202-1211
-
-
Vuzman, D.1
Polonsky, M.2
Levy, Y.3
-
60
-
-
84891611295
-
Speed-stability paradox in DNA-scanning by zinc-finger proteins
-
J. Iwahara, and Y. Levy Speed-stability paradox in DNA-scanning by zinc-finger proteins Transcription 4 2013 58 61
-
(2013)
Transcription
, vol.4
, pp. 58-61
-
-
Iwahara, J.1
Levy, Y.2
-
61
-
-
0004238344
-
-
Oxford Univ Press Oxford
-
B. Lewin Genes VII 2000 Oxford Univ Press Oxford
-
(2000)
Genes VII
-
-
Lewin, B.1
-
62
-
-
1842411320
-
Crystal structure of the nucleosome core particle at 2.8 Å resolution
-
K. Luger, A.W. Mader, R.K. Richmond, D.F. Sargent, and T.J. Richmond Crystal structure of the nucleosome core particle at 2.8 Å resolution Nature 389 1997 251 260
-
(1997)
Nature
, vol.389
, pp. 251-260
-
-
Luger, K.1
Mader, A.W.2
Richmond, R.K.3
Sargent, D.F.4
Richmond, T.J.5
-
63
-
-
46749108829
-
Tumor suppressor p53 slides on DNA with low friction and high stability
-
A. Tafvizi, F. Huang, J.S. Leith, A.R. Fersht, L.A. Mirny, and A.M. van Oijen Tumor suppressor p53 slides on DNA with low friction and high stability Biophys J 95 2008 L01 L03
-
(2008)
Biophys J
, vol.95
-
-
Tafvizi, A.1
Huang, F.2
Leith, J.S.3
Fersht, A.R.4
Mirny, L.A.5
Van Oijen, A.M.6
-
64
-
-
47249153641
-
Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA
-
I. Bonnet, A. Biebricher, P.L. Porte, C. Loverdo, O. Benichou, and R. Voituriez et al. Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA Nucleic Acids Res 36 2008 4118 4127
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 4118-4127
-
-
Bonnet, I.1
Biebricher, A.2
Porte, P.L.3
Loverdo, C.4
Benichou, O.5
Voituriez, R.6
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