메뉴 건너뛰기




Volumn 14, Issue 12, 2013, Pages

Lsh regulates LTR retrotransposon repression independently of Dnmt3b function

Author keywords

[No Author keywords available]

Indexed keywords

DNA METHYLTRANSFERASE 3B; HELICASE; HISTONE H3; INHIBITOR OF APOPTOSIS PROTEIN; PROTEIN LSH; UNCLASSIFIED DRUG; DNA (CYTOSINE 5) METHYLTRANSFERASE; DNA HELICASE; HISTONE; LYMPHOID SPECIFIC HELICASE, MOUSE; RETROPOSON;

EID: 84890815968     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2013-14-12-r146     Document Type: Article
Times cited : (49)

References (73)
  • 1
    • 84875167169 scopus 로고    scopus 로고
    • Non-canonical functions of the DNA methylome in gene regulation
    • Reddington JP, Pennings S, Meehan RR Non-canonical functions of the DNA methylome in gene regulation. Biochem J 2013, 451:13-23.
    • (2013) Biochem J , vol.451 , pp. 13-23
    • Reddington, J.P.1    Pennings, S.2    Meehan, R.R.3
  • 4
    • 0026708177 scopus 로고
    • Targeted mutation of the DNA methyltransferase gene results in embryonic lethality
    • Li E, Bestor TH, Jaenisch R Targeted mutation of the DNA methyltransferase gene results in embryonic lethality. Cell 1992, 69:915-926.
    • (1992) Cell , vol.69 , pp. 915-926
    • Li, E.1    Bestor, T.H.2    Jaenisch, R.3
  • 5
    • 0033615717 scopus 로고    scopus 로고
    • DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development
    • Okano M, Bell DW, Haber DA, Li E DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development. Cell 1999, 99:247-257.
    • (1999) Cell , vol.99 , pp. 247-257
    • Okano, M.1    Bell, D.W.2    Haber, D.A.3    Li, E.4
  • 6
    • 80054707556 scopus 로고    scopus 로고
    • Regulation of DNA methyltransferase 1 by interactions and modifications
    • Qin W, Leonhardt H, Pichler G Regulation of DNA methyltransferase 1 by interactions and modifications. Nucleus 2011, 2:392-402.
    • (2011) Nucleus , vol.2 , pp. 392-402
    • Qin, W.1    Leonhardt, H.2    Pichler, G.3
  • 12
    • 0037428383 scopus 로고    scopus 로고
    • Deficient in DNA methylation 1 (DDM1) defines a novel family of chromatin-remodeling factors
    • Brzeski J, Jerzmanowski A Deficient in DNA methylation 1 (DDM1) defines a novel family of chromatin-remodeling factors. J Biol Chem 2003, 278:823-828.
    • (2003) J Biol Chem , vol.278 , pp. 823-828
    • Brzeski, J.1    Jerzmanowski, A.2
  • 13
    • 80052970429 scopus 로고    scopus 로고
    • Mechanisms for ATP-dependent chromatin remodelling: the means to the end
    • Flaus A, Owen-Hughes T Mechanisms for ATP-dependent chromatin remodelling: the means to the end. Febs J 2011, 278:3579-3595.
    • (2011) Febs J , vol.278 , pp. 3579-3595
    • Flaus, A.1    Owen-Hughes, T.2
  • 14
    • 84873560971 scopus 로고    scopus 로고
    • The SNF2 family ATPase LSH promotes phosphorylation of H2AX and efficient repair of DNA double-strand breaks in mammalian cells
    • Burrage J, Termanis A, Geissner A, Myant K, Gordon K, Stancheva I The SNF2 family ATPase LSH promotes phosphorylation of H2AX and efficient repair of DNA double-strand breaks in mammalian cells. J Cell Sci 2012, 125:5524-5534.
    • (2012) J Cell Sci , vol.125 , pp. 5524-5534
    • Burrage, J.1    Termanis, A.2    Geissner, A.3    Myant, K.4    Gordon, K.5    Stancheva, I.6
  • 15
    • 0037072666 scopus 로고    scopus 로고
    • Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1
    • Gendrel AV, Lippman Z, Yordan C, Colot V, Martienssen RA Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1. Science 2002, 297:1871-1873.
    • (2002) Science , vol.297 , pp. 1871-1873
    • Gendrel, A.V.1    Lippman, Z.2    Yordan, C.3    Colot, V.4    Martienssen, R.A.5
  • 17
    • 84899437482 scopus 로고    scopus 로고
    • Defending the genome from the enemy within: mechanisms of retrotransposon suppression in the mouse germline
    • [Epub ahead of print]
    • Crichton JH, Dunican DS, Maclennan M, Meehan RR, Adams IR Defending the genome from the enemy within: mechanisms of retrotransposon suppression in the mouse germline. Cell Mol Life Sci 2013. [Epub ahead of print].
    • (2013) Cell Mol Life Sci
    • Crichton, J.H.1    Dunican, D.S.2    Maclennan, M.3    Meehan, R.R.4    Adams, I.R.5
  • 20
    • 84875936827 scopus 로고    scopus 로고
    • The genome-defence gene Tex19 1 suppresses LINE-1 retrotransposons in the placenta and prevents intra-uterine growth retardation in mice
    • Reichmann J, Reddington JP, Best D, Read D, Ollinger R, Meehan RR, Adams IR The genome-defence gene Tex19.1 suppresses LINE-1 retrotransposons in the placenta and prevents intra-uterine growth retardation in mice. Hum Mol Genet 2013, 22:1791-1806.
    • (2013) Hum Mol Genet , vol.22 , pp. 1791-1806
    • Reichmann, J.1    Reddington, J.P.2    Best, D.3    Read, D.4    Ollinger, R.5    Meehan, R.R.6    Adams, I.R.7
  • 23
    • 4143099308 scopus 로고    scopus 로고
    • Mouse centric and pericentric satellite repeats form distinct functional heterochromatin
    • Guenatri M, Bailly D, Maison C, Almouzni G Mouse centric and pericentric satellite repeats form distinct functional heterochromatin. J Cell Biol 2004, 166:493-505.
    • (2004) J Cell Biol , vol.166 , pp. 493-505
    • Guenatri, M.1    Bailly, D.2    Maison, C.3    Almouzni, G.4
  • 24
    • 0032901199 scopus 로고    scopus 로고
    • Cytosine methylation and mammalian development
    • Walsh CP, Bestor TH Cytosine methylation and mammalian development. Genes Dev 1999, 13:26-34.
    • (1999) Genes Dev , vol.13 , pp. 26-34
    • Walsh, C.P.1    Bestor, T.H.2
  • 25
    • 84870369437 scopus 로고    scopus 로고
    • Transcriptional activation of mouse major satellite regions during neuronal differentiation
    • Kishi Y, Kondo S, Gotoh Y Transcriptional activation of mouse major satellite regions during neuronal differentiation. Cell Struct Funct 2012, 37:101-110.
    • (2012) Cell Struct Funct , vol.37 , pp. 101-110
    • Kishi, Y.1    Kondo, S.2    Gotoh, Y.3
  • 26
    • 77957857693 scopus 로고    scopus 로고
    • A strand-specific burst in transcription of pericentric satellites is required for chromocenter formation and early mouse development
    • Probst AV, Okamoto I, Casanova M, El Marjou F, Le Baccon P, Almouzni G A strand-specific burst in transcription of pericentric satellites is required for chromocenter formation and early mouse development. Dev Cell 2010, 19:625-638.
    • (2010) Dev Cell , vol.19 , pp. 625-638
    • Probst, A.V.1    Okamoto, I.2    Casanova, M.3    El Marjou, F.4    Le Baccon, P.5    Almouzni, G.6
  • 30
    • 72849148752 scopus 로고    scopus 로고
    • Lsh participates in DNA methylation and silencing of stem cell genes
    • Xi S, Geiman TM, Briones V, Guang TY, Xu H, Muegge K Lsh participates in DNA methylation and silencing of stem cell genes. Stem Cells 2009, 27:2691-2702.
    • (2009) Stem Cells , vol.27 , pp. 2691-2702
    • Xi, S.1    Geiman, T.M.2    Briones, V.3    Guang, T.Y.4    Xu, H.5    Muegge, K.6
  • 34
    • 78651251739 scopus 로고    scopus 로고
    • Comparison of methyl-DNA immunoprecipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal CpG sequence coverage bias
    • Nair SS, Coolen MW, Stirzaker C, Song JZ, Statham AL, Strbenac D, Robinson MD, Clark SJ Comparison of methyl-DNA immunoprecipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal CpG sequence coverage bias. Epigenetics 2011, 6:34-44.
    • (2011) Epigenetics , vol.6 , pp. 34-44
    • Nair, S.S.1    Coolen, M.W.2    Stirzaker, C.3    Song, J.Z.4    Statham, A.L.5    Strbenac, D.6    Robinson, M.D.7    Clark, S.J.8
  • 36
    • 84923901540 scopus 로고    scopus 로고
    • Bowtie: An ultrafast, memory-efficient short read aligner
    • Bowtie: An ultrafast, memory-efficient short read aligner. URL: http://bowtie-bio.sourceforge.net/index.shtml.
  • 38
    • 33645735015 scopus 로고    scopus 로고
    • Roles for Dnmt3b in mammalian development: a mouse model for the ICF syndrome
    • Ueda Y, Okano M, Williams C, Chen TP, Georgopoulos K, Li E Roles for Dnmt3b in mammalian development: a mouse model for the ICF syndrome. Development 2006, 133:1183-1192.
    • (2006) Development , vol.133 , pp. 1183-1192
    • Ueda, Y.1    Okano, M.2    Williams, C.3    Chen, T.P.4    Georgopoulos, K.5    Li, E.6
  • 39
    • 0842325730 scopus 로고    scopus 로고
    • Dnmt1 expression in pre- and postimplantation embryogenesis and the maintenance of IAP silencing
    • Gaudet F, Rideout WM, Meissner A, Dausman J, Leonhardt H, Jaenisch R Dnmt1 expression in pre- and postimplantation embryogenesis and the maintenance of IAP silencing. Mol Cell Biol 2004, 24:1640-1648.
    • (2004) Mol Cell Biol , vol.24 , pp. 1640-1648
    • Gaudet, F.1    Rideout, W.M.2    Meissner, A.3    Dausman, J.4    Leonhardt, H.5    Jaenisch, R.6
  • 40
    • 34548705374 scopus 로고    scopus 로고
    • Role of the Dnmt3 family in de novo methylation of imprinted and repetitive sequences during male germ cell development in the mouse
    • Kato Y, Kaneda M, Hata K, Kumaki K, Hisano M, Kohara Y, Okano M, Li E, Nozaki M, Sasaki H Role of the Dnmt3 family in de novo methylation of imprinted and repetitive sequences during male germ cell development in the mouse. Hum Mol Genet 2007, 16:2272-2280.
    • (2007) Hum Mol Genet , vol.16 , pp. 2272-2280
    • Kato, Y.1    Kaneda, M.2    Hata, K.3    Kumaki, K.4    Hisano, M.5    Kohara, Y.6    Okano, M.7    Li, E.8    Nozaki, M.9    Sasaki, H.10
  • 41
    • 0031662164 scopus 로고    scopus 로고
    • Transcription of IAP endogenous retroviruses is constrained by cytosine methylation
    • Walsh CP, Chaillet JR, Bestor TH Transcription of IAP endogenous retroviruses is constrained by cytosine methylation. Nat Genet 1998, 20:116-117.
    • (1998) Nat Genet , vol.20 , pp. 116-117
    • Walsh, C.P.1    Chaillet, J.R.2    Bestor, T.H.3
  • 42
    • 84923901539 scopus 로고    scopus 로고
    • TopHat: A spliced read mapper for RNA-Seq
    • TopHat: A spliced read mapper for RNA-Seq. URL: http://tophat.cbcb.umd.edu/.
  • 43
    • 84923901538 scopus 로고    scopus 로고
    • Galaxy Public Server
    • Galaxy Public Server. 2013 [https://main.g2.bx.psu.edu/]
    • (2013)
  • 44
    • 84923901537 scopus 로고    scopus 로고
    • R Programming Project
    • R Programming Project. 2013 [http://www.r-project.org]
    • (2013)
  • 45
    • 84923901536 scopus 로고    scopus 로고
    • EdgeR package
    • EdgeR package. 2013 [http://www.bioconductor.org/packages/2.11/bioc/html/edgeR.html]
    • (2013)
  • 47
    • 0031058049 scopus 로고    scopus 로고
    • Characterization of two age-induced intracisternal A-particle-related transcripts in the mouse liver - transcriptional read-through into an open reading frame with similarities to the yeast CCR4 transcription factor
    • Puech A, Dupressoir A, Loireau MP, Mattei MG, Heidmann T Characterization of two age-induced intracisternal A-particle-related transcripts in the mouse liver - transcriptional read-through into an open reading frame with similarities to the yeast CCR4 transcription factor. J Biol Chem 1997, 272:5995-6003.
    • (1997) J Biol Chem , vol.272 , pp. 5995-6003
    • Puech, A.1    Dupressoir, A.2    Loireau, M.P.3    Mattei, M.G.4    Heidmann, T.5
  • 48
    • 2442554169 scopus 로고    scopus 로고
    • Identification of autonomous IAP LTR retrotransposons mobile in mammalian cells
    • Dewannieux M, Dupressoir A, Harper F, Pierron G, Heidmann T Identification of autonomous IAP LTR retrotransposons mobile in mammalian cells. Nat Genet 2004, 36:534-539.
    • (2004) Nat Genet , vol.36 , pp. 534-539
    • Dewannieux, M.1    Dupressoir, A.2    Harper, F.3    Pierron, G.4    Heidmann, T.5
  • 49
    • 41649117808 scopus 로고    scopus 로고
    • An infectious progenitor for the murine IAP retrotransposon: emergence of an intracellular genetic parasite from an ancient retrovirus
    • Ribet D, Harper F, Dupressoir A, Dewannieux M, Pierron G, Heidmann T An infectious progenitor for the murine IAP retrotransposon: emergence of an intracellular genetic parasite from an ancient retrovirus. Genome Res 2008, 18:597-609.
    • (2008) Genome Res , vol.18 , pp. 597-609
    • Ribet, D.1    Harper, F.2    Dupressoir, A.3    Dewannieux, M.4    Pierron, G.5    Heidmann, T.6
  • 50
    • 0035839136 scopus 로고    scopus 로고
    • Translating the histone code
    • Jenuwein T, Allis CD Translating the histone code. Science 2001, 293:1074-1080.
    • (2001) Science , vol.293 , pp. 1074-1080
    • Jenuwein, T.1    Allis, C.D.2
  • 53
    • 0141642008 scopus 로고    scopus 로고
    • Lsh, a modulator of CpG methylation, is crucial for normal histone methylation
    • Yan QS, Huang JQ, Fan T, Zhu HM, Muegge K Lsh, a modulator of CpG methylation, is crucial for normal histone methylation. Embo J 2003, 22:5154-5162.
    • (2003) Embo J , vol.22 , pp. 5154-5162
    • Yan, Q.S.1    Huang, J.Q.2    Fan, T.3    Zhu, H.M.4    Muegge, K.5
  • 58
    • 0035890090 scopus 로고    scopus 로고
    • Lsh, a member of the SNF2 family, is required for genome-wide methylation
    • Dennis K, Fan T, Geiman T, Yan Q, Muegge K Lsh, a member of the SNF2 family, is required for genome-wide methylation. Genes Dev 2001, 15:2940-2944.
    • (2001) Genes Dev , vol.15 , pp. 2940-2944
    • Dennis, K.1    Fan, T.2    Geiman, T.3    Yan, Q.4    Muegge, K.5
  • 59
    • 0035893358 scopus 로고    scopus 로고
    • Lashings of DNA methylation, forkfuls of chromatin remodeling
    • Meehan RR, Pennings S, Stancheva I Lashings of DNA methylation, forkfuls of chromatin remodeling. Genes Dev 2001, 15:3231-3236.
    • (2001) Genes Dev , vol.15 , pp. 3231-3236
    • Meehan, R.R.1    Pennings, S.2    Stancheva, I.3
  • 60
    • 78650058320 scopus 로고    scopus 로고
    • Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias, and copy number variation
    • Robinson MD, Stirzaker C, Statham AL, Coolen MW, Song JZ, Nair SS, Strbenac D, Speed TP, Clark SJ Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias, and copy number variation. Genome Res 2010, 20:1719-1729. Erratum in Genome Res 2011, 21:146.
    • (2010) Genome Res , vol.20 , pp. 1719-1729
    • Robinson, M.D.1    Stirzaker, C.2    Statham, A.L.3    Coolen, M.W.4    Song, J.Z.5    Nair, S.S.6    Strbenac, D.7    Speed, T.P.8    Clark, S.J.9
  • 61
    • 4544223707 scopus 로고    scopus 로고
    • Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L
    • Bourc'his D, Bestor TH Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L. Nature 2004, 431:96-99.
    • (2004) Nature , vol.431 , pp. 96-99
    • Bourc'his, D.1    Bestor, T.H.2
  • 63
    • 79953163994 scopus 로고    scopus 로고
    • Chromatin states in pluripotent, differentiated, and reprogrammed cells
    • Fisher CL, Fisher AG Chromatin states in pluripotent, differentiated, and reprogrammed cells. Curr Opin Genet Dev 2011, 21:140-146.
    • (2011) Curr Opin Genet Dev , vol.21 , pp. 140-146
    • Fisher, C.L.1    Fisher, A.G.2
  • 67
    • 17144418335 scopus 로고    scopus 로고
    • The structures of mouse and human L1 elements reflect their insertion mechanism
    • Martin SL, Li WLP, Furano A, Boissinot S The structures of mouse and human L1 elements reflect their insertion mechanism. Cytogenet Genome Res 2005, 110:223-228.
    • (2005) Cytogenet Genome Res , vol.110 , pp. 223-228
    • Martin, S.L.1    Li, W.L.P.2    Furano, A.3    Boissinot, S.4
  • 68
    • 84883840386 scopus 로고
    • Quantitative studies of the growth of mouse embryo cells in culture and their development into established lines
    • Todaro GJ, Green H Quantitative studies of the growth of mouse embryo cells in culture and their development into established lines. J Cell Biol 1963, 17:299-313.
    • (1963) J Cell Biol , vol.17 , pp. 299-313
    • Todaro, G.J.1    Green, H.2
  • 69
    • 77951850381 scopus 로고    scopus 로고
    • BISMA - Fast and accurate bisulfite sequencing data analysis of individual clones from unique and repetitive sequences
    • Rohde C, Zhang YY, Reinhardt R, Jeltsch A BISMA - Fast and accurate bisulfite sequencing data analysis of individual clones from unique and repetitive sequences. BMC Bioinformatics 2010, 11:230.
    • (2010) BMC Bioinformatics , vol.11 , pp. 230
    • Rohde, C.1    Zhang, Y.Y.2    Reinhardt, R.3    Jeltsch, A.4
  • 70
    • 84923901535 scopus 로고    scopus 로고
    • Repeatmasker link
    • Repeatmasker link. 2013 [http://hgdownload.cse.ucsc.edu/downloads.html#mouse]
    • (2013)
  • 71
    • 84923901534 scopus 로고    scopus 로고
    • Text-NSP Source code link
    • Text-NSP Source code link. 2013 [http://search.cpan.org/~tpederse/Text-NSP-1.03]
    • (2013)
  • 72
    • 84859501917 scopus 로고    scopus 로고
    • PRC1 and PRC2 are not required for targeting of H2A Z to developmental genes in embryonic stem cells
    • Illingworth RS, Botting CH, Grimes GR, Bickmore WA, Eskeland R PRC1 and PRC2 are not required for targeting of H2A.Z to developmental genes in embryonic stem cells. Plos One 2012, 7:e34848.
    • (2012) Plos One , vol.7
    • Illingworth, R.S.1    Botting, C.H.2    Grimes, G.R.3    Bickmore, W.A.4    Eskeland, R.5
  • 73
    • 0021100690 scopus 로고
    • Accurate transcription initiation by RNA polymerase-II in a soluble extract from isolated mammalian nuclei
    • Dignam JD, Lebovitz RM, Roeder RG Accurate transcription initiation by RNA polymerase-II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Res 1983, 11:1475-1489.
    • (1983) Nucleic Acids Res , vol.11 , pp. 1475-1489
    • Dignam, J.D.1    Lebovitz, R.M.2    Roeder, R.G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.