-
1
-
-
77954748234
-
The UNITE database for molecular identification of fungi - recent updates and future perspectives
-
Abarenkov K, Nilsson RH, Larsson K-H, Alexander IJ, Eberhardt U, Erland S, Høiland K, Kjøller R, Larsson E, Pennanen T et al. 2010. The UNITE database for molecular identification of fungi - recent updates and future perspectives. New Phytologist 186: 281-285.
-
(2010)
New Phytologist
, vol.186
, pp. 281-285
-
-
Abarenkov, K.1
Nilsson, R.H.2
Larsson, K.-H.3
Alexander, I.J.4
Eberhardt, U.5
Erland, S.6
Høiland, K.7
Kjøller, R.8
Larsson, E.9
Pennanen, T.10
-
3
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. Journal of Molecular Biology 215: 403-410.
-
(1990)
Journal of Molecular Biology
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
4
-
-
84862611299
-
Coral-associated marine fungi form novel lineages and heterogeneous assemblages
-
Amend AS, Barshis DJ, Oliver TA. 2012. Coral-associated marine fungi form novel lineages and heterogeneous assemblages. The ISME Journal 6: 1291-1301.
-
(2012)
The ISME Journal
, vol.6
, pp. 1291-1301
-
-
Amend, A.S.1
Barshis, D.J.2
Oliver, T.A.3
-
5
-
-
77956373482
-
Indoor fungal composition is geographically patterned and more diverse in temperate zones than in the tropics
-
Amend AS, Seifert KA, Samson R, Bruns TD. 2010. Indoor fungal composition is geographically patterned and more diverse in temperate zones than in the tropics. Proceedings of the National Academy of Sciences, USA 107: 13748-13753.
-
(2010)
Proceedings of the National Academy of Sciences, USA
, vol.107
, pp. 13748-13753
-
-
Amend, A.S.1
Seifert, K.A.2
Samson, R.3
Bruns, T.D.4
-
6
-
-
34247175933
-
Diversity and host range of foliar fungal endophytes: are tropical leaves biodiversity hotspots?
-
Arnold AE, Lutzoni F. 2007. Diversity and host range of foliar fungal endophytes: are tropical leaves biodiversity hotspots? Ecology 88: 541-549.
-
(2007)
Ecology
, vol.88
, pp. 541-549
-
-
Arnold, A.E.1
Lutzoni, F.2
-
7
-
-
84865585233
-
Implications of pyrosequencing error correction for biological data interpretation
-
Bakker MG, Tu ZJ, Bradeen JM, Kinkel LL. 2012. Implications of pyrosequencing error correction for biological data interpretation. PLoS One 7: e44357.
-
(2012)
PLoS One
, vol.7
-
-
Bakker, M.G.1
Tu, Z.J.2
Bradeen, J.M.3
Kinkel, L.L.4
-
8
-
-
84872236906
-
Host genotype shapes the foliar fungal microbiome of balsam poplar (Populus balsamifera)
-
Bálint M, Tiffin P, Hallström B, O'Hara RB, Olson MS, Fankhauser JD, Piepenbring M, Schmitt I. 2013. Host genotype shapes the foliar fungal microbiome of balsam poplar (Populus balsamifera). PLoS One 8: e53987.
-
(2013)
PLoS One
, vol.8
-
-
Bálint, M.1
Tiffin, P.2
Hallström, B.3
O'Hara, R.B.4
Olson, M.S.5
Fankhauser, J.D.6
Piepenbring, M.7
Schmitt, I.8
-
9
-
-
82455212877
-
Three reasons to re-evaluate fungal diversity 'on earth and in the ocean'
-
Bass D, Richards TA. 2011. Three reasons to re-evaluate fungal diversity 'on earth and in the ocean'. Fungal Biology Reviews 25: 159-164.
-
(2011)
Fungal Biology Reviews
, vol.25
, pp. 159-164
-
-
Bass, D.1
Richards, T.A.2
-
10
-
-
84871736911
-
Comparison of ITS1 and ITS2 rDNA in 454 sequencing of hyperdiverse fungal communities
-
Bazzicalupo AL, Bálint M, Schmitt I. 2013. Comparison of ITS1 and ITS2 rDNA in 454 sequencing of hyperdiverse fungal communities. Fungal Ecology 6: 102-109.
-
(2013)
Fungal Ecology
, vol.6
, pp. 102-109
-
-
Bazzicalupo, A.L.1
Bálint, M.2
Schmitt, I.3
-
12
-
-
80053651587
-
GenBank
-
Benson DA, Cavanaugh M, Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW. 2013. GenBank. Nucleic Acids Research 41: D36-D42.
-
(2013)
Nucleic Acids Research
, vol.41
-
-
Benson, D.A.1
Cavanaugh, M.2
Clark, K.3
Karsch-Mizrachi, I.4
Lipman, D.J.5
Ostell, J.6
Sayers, E.W.7
-
13
-
-
84881085358
-
Preserving accuracy in GenBank
-
Bidartondo MI, Bruns TD, Blackwell M, Edwards I, Taylor AFS, Horton T, Zhang N, Kõljalg U, May G, Kuyper TW et al. 2008. Preserving accuracy in GenBank. Science 319: 1616.
-
(2008)
Science
, vol.319
, pp. 1616
-
-
Bidartondo, M.I.1
Bruns, T.D.2
Blackwell, M.3
Edwards, I.4
Taylor, A.F.S.5
Horton, T.6
Zhang, N.7
Kõljalg, U.8
May, G.9
Kuyper, T.W.10
-
14
-
-
84859574463
-
Changes in the root-associated fungal communities along a primary succession gradient analysed by 454 pyrosequencing
-
Blaalid R, Carlsen T, Kumar S, Halvorsen R, Ugland KI, Fontana G, Kauserud H. 2012. Changes in the root-associated fungal communities along a primary succession gradient analysed by 454 pyrosequencing. Molecular Ecology 21: 1897-1908.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1897-1908
-
-
Blaalid, R.1
Carlsen, T.2
Kumar, S.3
Halvorsen, R.4
Ugland, K.I.5
Fontana, G.6
Kauserud, H.7
-
15
-
-
79952741082
-
The Fungi: 1, 2, 3.. 5.1 million species?
-
Blackwell M. 2011. The Fungi: 1, 2, 3.. 5.1 million species? American Journal of Botany 98: 426-438.
-
(2011)
American Journal of Botany
, vol.98
, pp. 426-438
-
-
Blackwell, M.1
-
16
-
-
70349482733
-
454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity
-
Buée M, Reich M, Murat C, Morin E, Nilsson RH, Uroz S, Martin F. 2009. 454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity. New Phytologist 184: 449-456.
-
(2009)
New Phytologist
, vol.184
, pp. 449-456
-
-
Buée, M.1
Reich, M.2
Murat, C.3
Morin, E.4
Nilsson, R.H.5
Uroz, S.6
Martin, F.7
-
19
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI et al. 2010. QIIME allows analysis of high-throughput community sequencing data. Nature Methods 7: 335-336.
-
(2010)
Nature Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Peña, A.G.8
Goodrich, J.K.9
Gordon, J.I.10
-
20
-
-
51549114497
-
Population evidence of cryptic species and geographical structure in the cosmopolitan ectomycorrhizal fungus, Tricholoma scalpturatum
-
Carriconde F, Gardes M, Jargeat P, Heilmann-Clausen J, Mouhamadou B, Gryta H. 2008. Population evidence of cryptic species and geographical structure in the cosmopolitan ectomycorrhizal fungus, Tricholoma scalpturatum. Microbial Ecology 56: 513-524.
-
(2008)
Microbial Ecology
, vol.56
, pp. 513-524
-
-
Carriconde, F.1
Gardes, M.2
Jargeat, P.3
Heilmann-Clausen, J.4
Mouhamadou, B.5
Gryta, H.6
-
21
-
-
84864101999
-
Spatial variability of phyllosphere fungal assemblages: genetic distance predominates over geographic distance in a European beech stand (Fagus sylvatica)
-
Cordier T, Robin C, Capdevielle X, Desprez-Loustau M-L, Vacher C. 2012. Spatial variability of phyllosphere fungal assemblages: genetic distance predominates over geographic distance in a European beech stand (Fagus sylvatica). Fungal Ecology 5: 509-520.
-
(2012)
Fungal Ecology
, vol.5
, pp. 509-520
-
-
Cordier, T.1
Robin, C.2
Capdevielle, X.3
Desprez-Loustau, M.-L.4
Vacher, C.5
-
22
-
-
80755183248
-
Cryptic species in lichen-forming fungi
-
Crespo A, Lumbsch HT. 2010. Cryptic species in lichen-forming fungi. IMA Fungus 1: 167-170.
-
(2010)
IMA Fungus
, vol.1
, pp. 167-170
-
-
Crespo, A.1
Lumbsch, H.T.2
-
23
-
-
84874921990
-
Fungal soil communities in a young transgenic poplar plantation form a rich reservoir for fungal root communities
-
Danielsen L, Thürmer A, Meinicke P, Buée M, Morin E, Martin F, Pilate G, Daniel R, Polle A, Reich M. 2012. Fungal soil communities in a young transgenic poplar plantation form a rich reservoir for fungal root communities. Ecology and Evolution 2: 1935-1948.
-
(2012)
Ecology and Evolution
, vol.2
, pp. 1935-1948
-
-
Danielsen, L.1
Thürmer, A.2
Meinicke, P.3
Buée, M.4
Morin, E.5
Martin, F.6
Pilate, G.7
Daniel, R.8
Polle, A.9
Reich, M.10
-
24
-
-
34248667283
-
Molecular identification of black-grain mycetoma agents
-
Desnos-Ollivier M, Bretagne S, Dromer F, Lortholary O, Dannaoui E. 2006. Molecular identification of black-grain mycetoma agents. Journal of Clinical Microbiology 44: 3517-3523.
-
(2006)
Journal of Clinical Microbiology
, vol.44
, pp. 3517-3523
-
-
Desnos-Ollivier, M.1
Bretagne, S.2
Dromer, F.3
Lortholary, O.4
Dannaoui, E.5
-
25
-
-
78149365938
-
Insidious effects of sequencing errors on perceived diversity in molecular surveys
-
Dickie IA. 2010. Insidious effects of sequencing errors on perceived diversity in molecular surveys. New Phytologist 188: 916-918.
-
(2010)
New Phytologist
, vol.188
, pp. 916-918
-
-
Dickie, I.A.1
-
26
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar RC. 2010. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26: 2460-2461.
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
27
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R. 2011. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27: 2194-2200.
-
(2011)
Bioinformatics
, vol.27
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
28
-
-
84861371375
-
Sample richness and genetic diversity as drivers of chimera formation in nSSU metagenetic analyses
-
Fonseca VG, Nichols B, Lallias D, Quince C, Carvalho GR, Power DM, Creer S. 2012. Sample richness and genetic diversity as drivers of chimera formation in nSSU metagenetic analyses. Nucleic Acids Research 40: e66.
-
(2012)
Nucleic Acids Research
, vol.40
-
-
Fonseca, V.G.1
Nichols, B.2
Lallias, D.3
Quince, C.4
Carvalho, G.R.5
Power, D.M.6
Creer, S.7
-
29
-
-
78650871849
-
Microbially mediated plant functional traits
-
Friesen ML, Porter SS, Stark SC, von Wettberg EJ, Sachs JL, Martinez-Romero E. 2011. Microbially mediated plant functional traits. Annual Review of Ecology, Evolution, and Systematics 42: 23-46.
-
(2011)
Annual Review of Ecology, Evolution, and Systematics
, vol.42
, pp. 23-46
-
-
Friesen, M.L.1
Porter, S.S.2
Stark, S.C.3
von Wettberg, E.J.4
Sachs, J.L.5
Martinez-Romero, E.6
-
30
-
-
0027580147
-
ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts
-
Gardes M, Bruns TD. 1993. ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts. Molecular Ecology 2: 113-118.
-
(1993)
Molecular Ecology
, vol.2
, pp. 113-118
-
-
Gardes, M.1
Bruns, T.D.2
-
31
-
-
84890798415
-
The consequences of denoising marker-based metagenomic data
-
Gaspar JM, Thomas WK. 2012. The consequences of denoising marker-based metagenomic data. BMC Proceedings 6: P11.
-
(2012)
BMC Proceedings
, vol.6
-
-
Gaspar, J.M.1
Thomas, W.K.2
-
32
-
-
79958198222
-
Estimating species richness
-
Magurran AE, McGill BJ, eds. New York, NY, USA: Oxford University Press
-
Gotelli NJ, Colwell RK. 2011. Estimating species richness. In: Magurran AE, McGill BJ, eds. Biological diversity: frontiers in measurement and assessment. New York, NY, USA: Oxford University Press, 39-54.
-
(2011)
Biological diversity: frontiers in measurement and assessment
, pp. 39-54
-
-
Gotelli, N.J.1
Colwell, R.K.2
-
33
-
-
10644260347
-
Spatial scaling of microbial eukaryote diversity
-
Green JL, Holmes AJ, Westoby M, Oliver I, Briscoe D, Dangerfield M, Gillings M, Beattie AJ. 2004. Spatial scaling of microbial eukaryote diversity. Nature 432: 747-750.
-
(2004)
Nature
, vol.432
, pp. 747-750
-
-
Green, J.L.1
Holmes, A.J.2
Westoby, M.3
Oliver, I.4
Briscoe, D.5
Dangerfield, M.6
Gillings, M.7
Beattie, A.J.8
-
34
-
-
79952006773
-
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
-
Haas BJ, Gevers D, Earl AM, Feldgarden M, Ward DV, Giannoukos G, Ciulla D, Tabbaa D, Highlander SK, Sodergren E et al. 2011. Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Research 21: 494-504.
-
(2011)
Genome Research
, vol.21
, pp. 494-504
-
-
Haas, B.J.1
Gevers, D.2
Earl, A.M.3
Feldgarden, M.4
Ward, D.V.5
Giannoukos, G.6
Ciulla, D.7
Tabbaa, D.8
Highlander, S.K.9
Sodergren, E.10
-
35
-
-
0004152299
-
The fungal dimension of biodiversity: magnitude, significance, and conservation
-
Hawksworth DL. 1991. The fungal dimension of biodiversity: magnitude, significance, and conservation. Mycological Research 95: 641-655.
-
(1991)
Mycological Research
, vol.95
, pp. 641-655
-
-
Hawksworth, D.L.1
-
36
-
-
0035712954
-
The magnitude of fungal diversity: the 1.5 million species estimate revisited
-
Hawksworth DL. 2001. The magnitude of fungal diversity: the 1.5 million species estimate revisited. Mycological Research 105: 1422-1432.
-
(2001)
Mycological Research
, vol.105
, pp. 1422-1432
-
-
Hawksworth, D.L.1
-
37
-
-
79952447866
-
Progress in molecular and morphological taxon discovery in Fungi and options for formal classification of environmental sequences
-
Hibbett DS, Ohman A, Glotzer D, Nuhn M, Kirk P, Nilsson RH. 2011. Progress in molecular and morphological taxon discovery in Fungi and options for formal classification of environmental sequences. Fungal Biology Reviews 25: 38-47.
-
(2011)
Fungal Biology Reviews
, vol.25
, pp. 38-47
-
-
Hibbett, D.S.1
Ohman, A.2
Glotzer, D.3
Nuhn, M.4
Kirk, P.5
Nilsson, R.H.6
-
38
-
-
85027948942
-
Fungal systematics: is a new age of enlightenment at hand?
-
Hibbett DS, Taylor JW. 2013. Fungal systematics: is a new age of enlightenment at hand? Nature Reviews Microbiology 11: 129-133.
-
(2013)
Nature Reviews Microbiology
, vol.11
, pp. 129-133
-
-
Hibbett, D.S.1
Taylor, J.W.2
-
39
-
-
84890798063
-
-
geosphere: spherical trigonometry. R package version 2.0-7. [WWW document] URL [accessed 18 March 2013].
-
Hijmans RJ, Williams E, Chris V. 2012. geosphere: spherical trigonometry. R package version 2.0-7. [WWW document] URL http://CRAN.R-project.org/package=geosphere [accessed 18 March 2013].
-
(2012)
-
-
Hijmans, R.J.1
Williams, E.2
Chris, V.3
-
40
-
-
1542438057
-
On the generality of the latitudinal diversity gradient
-
Hillebrand H. 2004. On the generality of the latitudinal diversity gradient. The American Naturalist 163: 192-211.
-
(2004)
The American Naturalist
, vol.163
, pp. 192-211
-
-
Hillebrand, H.1
-
41
-
-
34948842866
-
Accuracy and quality of massively parallel DNA pyrosequencing
-
Huse SM, Huber JA, Morrison HG, Sogin ML, Welch DM. 2007. Accuracy and quality of massively parallel DNA pyrosequencing. Genome Biology 8: R143.
-
(2007)
Genome Biology
, vol.8
-
-
Huse, S.M.1
Huber, J.A.2
Morrison, H.G.3
Sogin, M.L.4
Welch, D.M.5
-
42
-
-
80052549504
-
Integrative analysis of environmental sequences using MEGAN4
-
Huson DH, Mitra S, Ruscheweyh H-J, Weber N, Schuster SC. 2011. Integrative analysis of environmental sequences using MEGAN4. Genome Research 21: 1552-1560.
-
(2011)
Genome Research
, vol.21
, pp. 1552-1560
-
-
Huson, D.H.1
Mitra, S.2
Ruscheweyh, H.-J.3
Weber, N.4
Schuster, S.C.5
-
43
-
-
84869886141
-
New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities
-
Ihrmark K, Bödeker ITM, Cruz-Martinez K, Friberg H, Kubartova A, Schenck J, Strid Y, Stenlid J, Brandström-Durling M, Clemmensen KE et al. 2012. New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities. FEMS Microbiology Ecology 82: 666-677.
-
(2012)
FEMS Microbiology Ecology
, vol.82
, pp. 666-677
-
-
Ihrmark, K.1
Bödeker, I.T.M.2
Cruz-Martinez, K.3
Friberg, H.4
Kubartova, A.5
Schenck, J.6
Strid, Y.7
Stenlid, J.8
Brandström-Durling, M.9
Clemmensen, K.E.10
-
44
-
-
79958294748
-
Discovery of novel intermediate forms redefines the fungal tree of life
-
Jones MDM, Forn I, Gadelha C, Egan MJ, Bass D, Massana R, Richards TA. 2011. Discovery of novel intermediate forms redefines the fungal tree of life. Nature 474: 200-203.
-
(2011)
Nature
, vol.474
, pp. 200-203
-
-
Jones, M.D.M.1
Forn, I.2
Gadelha, C.3
Egan, M.J.4
Bass, D.5
Massana, R.6
Richards, T.A.7
-
45
-
-
70349493057
-
Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere
-
Jumpponen A, Jones KL. 2009. Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere. New Phytologist 184: 438-448.
-
(2009)
New Phytologist
, vol.184
, pp. 438-448
-
-
Jumpponen, A.1
Jones, K.L.2
-
46
-
-
77951924594
-
Massively parallel 454-sequencing of fungal communities in Quercus spp. ectomycorrhizas indicates seasonal dynamics in urban and rural sites
-
Jumpponen A, Jones KL, Mattox JD, Yaege C. 2010. Massively parallel 454-sequencing of fungal communities in Quercus spp. ectomycorrhizas indicates seasonal dynamics in urban and rural sites. Molecular Ecology 19: 41-53.
-
(2010)
Molecular Ecology
, vol.19
, pp. 41-53
-
-
Jumpponen, A.1
Jones, K.L.2
Mattox, J.D.3
Yaege, C.4
-
48
-
-
19344366809
-
UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi
-
Kõljalg U, Larsson K-H, Abarenkov K, Nilsson RH, Alexander IJ, Eberhardt U, Erland S, Høiland K, Kjøller R, Larsson E et al. 2005. UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi. New Phytologist 166: 1063-1068.
-
(2005)
New Phytologist
, vol.166
, pp. 1063-1068
-
-
Kõljalg, U.1
Larsson, K.-H.2
Abarenkov, K.3
Nilsson, R.H.4
Alexander, I.J.5
Eberhardt, U.6
Erland, S.7
Høiland, K.8
Kjøller, R.9
Larsson, E.10
-
49
-
-
80255135628
-
Dynamics of the root/soil pathogens and antagonists in organic and integrated production of potato
-
Lenc L, Kwaśna H, Sadowski C. 2011. Dynamics of the root/soil pathogens and antagonists in organic and integrated production of potato. European Journal of Plant Pathology 131: 603-620.
-
(2011)
European Journal of Plant Pathology
, vol.131
, pp. 603-620
-
-
Lenc, L.1
Kwaśna, H.2
Sadowski, C.3
-
50
-
-
84863529535
-
Microbial communities in potato roots and soil in organic and integrated production systems compared by the plate culturing method
-
Lenc L, Kwaśna H, Sadowski C. 2012. Microbial communities in potato roots and soil in organic and integrated production systems compared by the plate culturing method. Journal of Phytopathology 160: 337-345.
-
(2012)
Journal of Phytopathology
, vol.160
, pp. 337-345
-
-
Lenc, L.1
Kwaśna, H.2
Sadowski, C.3
-
51
-
-
84878360700
-
Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide
-
Lindahl BD, Nilsson RH, Tedersoo L, Abarenkov K, Carlsen T, Kjøller R, Kõljalg U, Pennanen T, Rosendahl S, Stenlid J et al. 2013. Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide. New Phytologist 199: 288-299.
-
(2013)
New Phytologist
, vol.199
, pp. 288-299
-
-
Lindahl, B.D.1
Nilsson, R.H.2
Tedersoo, L.3
Abarenkov, K.4
Carlsen, T.5
Kjøller, R.6
Kõljalg, U.7
Pennanen, T.8
Rosendahl, S.9
Stenlid, J.10
-
52
-
-
77955262221
-
Disclosing arbuscular mycorrhizal fungal biodiversity in soil through a land-use gradient using a pyrosequencing approach
-
Lumini E, Orgiazzi A, Borriello R, Bonfante P, Bianciotto V. 2010. Disclosing arbuscular mycorrhizal fungal biodiversity in soil through a land-use gradient using a pyrosequencing approach. Environmental Microbiology 12: 2165-2179.
-
(2010)
Environmental Microbiology
, vol.12
, pp. 2165-2179
-
-
Lumini, E.1
Orgiazzi, A.2
Borriello, R.3
Bonfante, P.4
Bianciotto, V.5
-
54
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen Y-J, Chen Z et al. 2005. Genome sequencing in microfabricated high-density picolitre reactors. Nature 437: 376-380.
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
Bemben, L.A.6
Berka, J.7
Braverman, M.S.8
Chen, Y.-J.9
Chen, Z.10
-
55
-
-
48349140385
-
Sistotrema is a genus with ectomycorrhizal species - confirmation of what sequence studies already suggested
-
Marino E, Scattolin L, Bodensteiner P, Agerer R. 2008. Sistotrema is a genus with ectomycorrhizal species - confirmation of what sequence studies already suggested. Mycological Progress 7: 169-176.
-
(2008)
Mycological Progress
, vol.7
, pp. 169-176
-
-
Marino, E.1
Scattolin, L.2
Bodensteiner, P.3
Agerer, R.4
-
56
-
-
23044485088
-
Fungal-specific PCR primers developed for analysis of the ITS region of environmental DNA extracts
-
Martin KJ, Rygiewicz P. 2005. Fungal-specific PCR primers developed for analysis of the ITS region of environmental DNA extracts. BMC Microbiology 5: 28.
-
(2005)
BMC Microbiology
, vol.5
, pp. 28
-
-
Martin, K.J.1
Rygiewicz, P.2
-
57
-
-
31544448331
-
Microbial biogeography: putting microorganisms on the map
-
Martiny JBH, Bohannan BJM, Brown JH, Colwell RK, Fuhrman JA, Green JL, Horner-Devine MC, Kane M, Krumins JA, Kuske CR et al. 2006. Microbial biogeography: putting microorganisms on the map. Nature Reviews Microbiology 4: 102-112.
-
(2006)
Nature Reviews Microbiology
, vol.4
, pp. 102-112
-
-
Martiny, J.B.H.1
Bohannan, B.J.M.2
Brown, J.H.3
Colwell, R.K.4
Fuhrman, J.A.5
Green, J.L.6
Horner-Devine, M.C.7
Kane, M.8
Krumins, J.A.9
Kuske, C.R.10
-
58
-
-
0001130952
-
A fondness for fungi
-
May RM. 1991. A fondness for fungi. Nature 352: 475-476.
-
(1991)
Nature
, vol.352
, pp. 475-476
-
-
May, R.M.1
-
59
-
-
80051870725
-
Much ado about nothings: using zero similarity points in distance-decay curves
-
Millar RB, Anderson MJ, Tolimieri N. 2011. Much ado about nothings: using zero similarity points in distance-decay curves. Ecology 92: 1717-1722.
-
(2011)
Ecology
, vol.92
, pp. 1717-1722
-
-
Millar, R.B.1
Anderson, M.J.2
Tolimieri, N.3
-
60
-
-
80052310753
-
How many species are there on earth and in the ocean?
-
Mora C, Tittensor DP, Adl S, Simpson AGB, Worm B. 2011. How many species are there on earth and in the ocean? PLoS Biology 9: e1001127.
-
(2011)
PLoS Biology
, vol.9
-
-
Mora, C.1
Tittensor, D.P.2
Adl, S.3
Simpson, A.G.B.4
Worm, B.5
-
61
-
-
79960511529
-
Where is the unseen fungal diversity hidden? A study of Mortierella reveals a large contribution of reference collections to the identification of fungal environmental sequences
-
Nagy LG, Petkovits T, Kovács GM, Voigt K, Vágvölgyi C, Papp T. 2011. Where is the unseen fungal diversity hidden? A study of Mortierella reveals a large contribution of reference collections to the identification of fungal environmental sequences. New Phytologist 191: 789-794.
-
(2011)
New Phytologist
, vol.191
, pp. 789-794
-
-
Nagy, L.G.1
Petkovits, T.2
Kovács, G.M.3
Voigt, K.4
Vágvölgyi, C.5
Papp, T.6
-
62
-
-
0033404204
-
The distance decay of similarity in biogeography and ecology
-
Nekola JC, White PS. 1999. The distance decay of similarity in biogeography and ecology. Journal of Biogeography 26: 867-878.
-
(1999)
Journal of Biogeography
, vol.26
, pp. 867-878
-
-
Nekola, J.C.1
White, P.S.2
-
63
-
-
45749142504
-
Intraspecific ITS variability in the kingdom Fungi as expressed in the international sequence databases and its implications for molecular species identification
-
Nilsson RH, Kristiansson E, Ryberg M, Hallenberg N, Larsson K-H. 2008. Intraspecific ITS variability in the kingdom Fungi as expressed in the international sequence databases and its implications for molecular species identification. Evolutionary Bioinformatics Online 4: 193-201.
-
(2008)
Evolutionary Bioinformatics Online
, vol.4
, pp. 193-201
-
-
Nilsson, R.H.1
Kristiansson, E.2
Ryberg, M.3
Hallenberg, N.4
Larsson, K.-H.5
-
64
-
-
67149109995
-
The ITS region as a target for characterization of fungal communities using emerging sequencing technologies
-
Nilsson RH, Ryberg M, Abarenkov K, Sjökvist E, Kristiansson E. 2009. The ITS region as a target for characterization of fungal communities using emerging sequencing technologies. FEMS Microbiology Letters 296: 97-101.
-
(2009)
FEMS Microbiology Letters
, vol.296
, pp. 97-101
-
-
Nilsson, R.H.1
Ryberg, M.2
Abarenkov, K.3
Sjökvist, E.4
Kristiansson, E.5
-
65
-
-
36049004436
-
Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective
-
Nilsson RH, Ryberg M, Kristiansson E, Abarenkov K, Larsson K-H, Kõljalg U. 2006. Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective. PLoS One 1: e59.
-
(2006)
PLoS One
, vol.1
-
-
Nilsson, R.H.1
Ryberg, M.2
Kristiansson, E.3
Abarenkov, K.4
Larsson, K.-H.5
Kõljalg, U.6
-
66
-
-
79959874811
-
Towards standardization of the description and publication of next-generation sequencing datasets of fungal communities
-
Nilsson RH, Tedersoo L, Lindahl BD, Kjøller R, Carlsen T, Quince C, Abarenkov K, Pennanen T, Stenlid J, Bruns T et al. 2011. Towards standardization of the description and publication of next-generation sequencing datasets of fungal communities. New Phytologist 191: 314-318.
-
(2011)
New Phytologist
, vol.191
, pp. 314-318
-
-
Nilsson, R.H.1
Tedersoo, L.2
Lindahl, B.D.3
Kjøller, R.4
Carlsen, T.5
Quince, C.6
Abarenkov, K.7
Pennanen, T.8
Stenlid, J.9
Bruns, T.10
-
67
-
-
77956292565
-
An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology
-
Nilsson RH, Veldre V, Hartmann M, Unterseher M, Amend A, Bergsten J, Kristiansson E, Ryberg M, Jumpponen A, Abarenkov K. 2010. An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology. Fungal Ecology 3: 284-287.
-
(2010)
Fungal Ecology
, vol.3
, pp. 284-287
-
-
Nilsson, R.H.1
Veldre, V.2
Hartmann, M.3
Unterseher, M.4
Amend, A.5
Bergsten, J.6
Kristiansson, E.7
Ryberg, M.8
Jumpponen, A.9
Abarenkov, K.10
-
68
-
-
0036737579
-
Udeniomyces pannonicus sp. nov., a ballistoconidium-forming yeast isolated from leaves of plants in Hungary
-
Niwata Y, Takashima M, Tornai-Lehoczki J, Deak T, Nakase T. 2002. Udeniomyces pannonicus sp. nov., a ballistoconidium-forming yeast isolated from leaves of plants in Hungary. International Journal of Systematic and Evolutionary Microbiology 52: 1887-1892.
-
(2002)
International Journal of Systematic and Evolutionary Microbiology
, vol.52
, pp. 1887-1892
-
-
Niwata, Y.1
Takashima, M.2
Tornai-Lehoczki, J.3
Deak, T.4
Nakase, T.5
-
69
-
-
34547760289
-
Low beta diversity of herbivorous insects in tropical forests
-
Novotny V, Miller SE, Hulcr J, Drew RAI, Basset Y, Janda M, Setliff GP, Darrow K, Stewart AJA, Auga J et al. 2007. Low beta diversity of herbivorous insects in tropical forests. Nature 448: 692-695.
-
(2007)
Nature
, vol.448
, pp. 692-695
-
-
Novotny, V.1
Miller, S.E.2
Hulcr, J.3
Drew, R.A.I.4
Basset, Y.5
Janda, M.6
Setliff, G.P.7
Darrow, K.8
Stewart, A.J.A.9
Auga, J.10
-
70
-
-
25144516095
-
Fungal community analysis by large-scale sequencing of environmental samples
-
O'Brien HE, Parrent JL, Jackson JA, Moncalvo J-M, Vilgalys R. 2005. Fungal community analysis by large-scale sequencing of environmental samples. Applied and Environmental Microbiology 71: 5544-5550.
-
(2005)
Applied and Environmental Microbiology
, vol.71
, pp. 5544-5550
-
-
O'Brien, H.E.1
Parrent, J.L.2
Jackson, J.A.3
Moncalvo, J.-M.4
Vilgalys, R.5
-
71
-
-
84890798717
-
-
vegan: community ecology package. R package version 2.0-7. [WWW document] URL [accessed 18 March 2013].
-
Oksanen J, Blanchet FG, Kindt R, Legendre P, Minchin PR, O'Hara RB, Simpson GL, Solymos P, Stevens MHH, Wagner H. 2013. vegan: community ecology package. R package version 2.0-7. [WWW document] URL http://CRAN.R-project.org/package=vegan [accessed 18 March 2013].
-
(2013)
-
-
Oksanen, J.1
Blanchet, F.G.2
Kindt, R.3
Legendre, P.4
Minchin, P.R.5
O'Hara, R.B.6
Simpson, G.L.7
Solymos, P.8
Stevens, M.H.H.9
Wagner, H.10
-
72
-
-
70349525156
-
Large-scale parallel 454 sequencing reveals host ecological group specificity of arbuscular mycorrhizal fungi in a boreonemoral forest
-
Öpik M, Metsis M, Daniell TJ, Zobel M, Moora M. 2009. Large-scale parallel 454 sequencing reveals host ecological group specificity of arbuscular mycorrhizal fungi in a boreonemoral forest. New Phytologist 184: 424-437.
-
(2009)
New Phytologist
, vol.184
, pp. 424-437
-
-
Öpik, M.1
Metsis, M.2
Daniell, T.J.3
Zobel, M.4
Moora, M.5
-
73
-
-
84871731598
-
Fungal under-representation is (slowly) diminishing in the life sciences
-
Pautasso M. 2013. Fungal under-representation is (slowly) diminishing in the life sciences. Fungal Ecology 6: 129-135.
-
(2013)
Fungal Ecology
, vol.6
, pp. 129-135
-
-
Pautasso, M.1
-
74
-
-
84883147832
-
Strong coupling of plant and fungal community structure across western Amazonian rainforests
-
Peay KG, Baraloto C, Fine PV. 2013. Strong coupling of plant and fungal community structure across western Amazonian rainforests. The ISME Journal 7: 1852-1861.
-
(2013)
The ISME Journal
, vol.7
, pp. 1852-1861
-
-
Peay, K.G.1
Baraloto, C.2
Fine, P.V.3
-
75
-
-
0002891016
-
Latitudinal gradients in species diversity: a review of concepts
-
Pianka ER. 1966. Latitudinal gradients in species diversity: a review of concepts. The American Naturalist 100: 33-46.
-
(1966)
The American Naturalist
, vol.100
, pp. 33-46
-
-
Pianka, E.R.1
-
76
-
-
84859436530
-
NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy
-
Pruitt KD, Tatusova T, Brown GR, Maglott DR. 2012. NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy. Nucleic Acids Research 40: D130-D135.
-
(2012)
Nucleic Acids Research
, vol.40
-
-
Pruitt, K.D.1
Tatusova, T.2
Brown, G.R.3
Maglott, D.R.4
-
78
-
-
84863304598
-
-
R Core Team. Vienna, Austria: R Foundation for Statistical Computing. [WWW document] URL [accessed 1 March 2013].
-
R Core Team. 2013. R: a language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing. [WWW document] URL http://www.R-project.org/ [accessed 1 March 2013].
-
(2013)
R: a language and environment for statistical computing
-
-
-
79
-
-
84880171847
-
Mycology should be recognized as a field in biology at eye level with other major disciplines - a memorandum
-
Rambold G, Stadler M, Begerow D. 2013. Mycology should be recognized as a field in biology at eye level with other major disciplines - a memorandum. Mycological Progress 12: 455-463.
-
(2013)
Mycological Progress
, vol.12
, pp. 455-463
-
-
Rambold, G.1
Stadler, M.2
Begerow, D.3
-
81
-
-
0002314274
-
-
Baarn/Delft, The Netherlands: Cebtraalbureau voor Schimmelcultures.
-
Rossman AY, Samuels GJ, Rogerson CT, Lowen R. 1999. Genera of Bionectriaceae, Hypocreaceae and Nectriaceae (Hypocreales, Ascomycetes). Baarn/Delft, The Netherlands: Cebtraalbureau voor Schimmelcultures.
-
(1999)
Genera of Bionectriaceae, Hypocreaceae and Nectriaceae (Hypocreales, Ascomycetes)
-
-
Rossman, A.Y.1
Samuels, G.J.2
Rogerson, C.T.3
Lowen, R.4
-
83
-
-
83355173006
-
Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies
-
Schloss PD, Gevers D, Westcott SL. 2011. Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. PLoS One 6: e27310.
-
(2011)
PLoS One
, vol.6
-
-
Schloss, P.D.1
Gevers, D.2
Westcott, S.L.3
-
84
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ et al. 2009. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Applied and Environmental Microbiology 75: 7537-7541.
-
(2009)
Applied and Environmental Microbiology
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
Lesniewski, R.A.7
Oakley, B.B.8
Parks, D.H.9
Robinson, C.J.10
-
85
-
-
84879434377
-
Illumina metabarcoding of a soil fungal community
-
Schmidt P-A, Bálint M, Greshake B, Bandow C, Römbke J, Schmitt I. 2013. Illumina metabarcoding of a soil fungal community. Soil Biology & Biochemistry 65: 128-132.
-
(2013)
Soil Biology & Biochemistry
, vol.65
, pp. 128-132
-
-
Schmidt, P.-A.1
Bálint, M.2
Greshake, B.3
Bandow, C.4
Römbke, J.5
Schmitt, I.6
-
86
-
-
84859972408
-
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
-
Fungal Barcoding Consortium
-
Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, Levesque CA, Chen W, Fungal Barcoding Consortium. 2012. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences, USA 109: 6241-6246.
-
(2012)
Proceedings of the National Academy of Sciences, USA
, vol.109
, pp. 6241-6246
-
-
Schoch, C.L.1
Seifert, K.A.2
Huhndorf, S.3
Robert, V.4
Spouge, J.L.5
Levesque, C.A.6
Chen, W.7
-
88
-
-
40349096306
-
Out of the rivers: are some aquatic hyphomycetes plant endophytes?
-
Selosse M-A, Vohník M, Chauvet E. 2008. Out of the rivers: are some aquatic hyphomycetes plant endophytes? New Phytologist 178: 3-7.
-
(2008)
New Phytologist
, vol.178
, pp. 3-7
-
-
Selosse, M.-A.1
Vohník, M.2
Chauvet, E.3
-
89
-
-
84865454851
-
Towards global patterns in the diversity and community structure of ectomycorrhizal fungi
-
Tedersoo L, Bahram M, Toots M, Diédhiou AG, Henkel TW, Kjøller R, Morris MH, Nara K, Nouhra E, Peay KG et al. 2012. Towards global patterns in the diversity and community structure of ectomycorrhizal fungi. Molecular Ecology 21: 4160-4170.
-
(2012)
Molecular Ecology
, vol.21
, pp. 4160-4170
-
-
Tedersoo, L.1
Bahram, M.2
Toots, M.3
Diédhiou, A.G.4
Henkel, T.W.5
Kjøller, R.6
Morris, M.H.7
Nara, K.8
Nouhra, E.9
Peay, K.G.10
-
90
-
-
77956283658
-
454 pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases
-
Tedersoo L, Nilsson RH, Abarenkov K, Jairus T, Sadam A, Saar I, Bahram M, Bechem E, Chuyong G, Kõljalg U. 2010. 454 pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases. New Phytologist 188: 291-301.
-
(2010)
New Phytologist
, vol.188
, pp. 291-301
-
-
Tedersoo, L.1
Nilsson, R.H.2
Abarenkov, K.3
Jairus, T.4
Sadam, A.5
Saar, I.6
Bahram, M.7
Bechem, E.8
Chuyong, G.9
Kõljalg, U.10
-
91
-
-
84863764544
-
High-coverage ITS primers for the DNA-based identification of Ascomycetes and Basidiomycetes in environmental samples
-
Toju H, Tanabe AS, Yamamoto S, Sato H. 2012. High-coverage ITS primers for the DNA-based identification of Ascomycetes and Basidiomycetes in environmental samples. PLoS One 7: e40863.
-
(2012)
PLoS One
, vol.7
-
-
Toju, H.1
Tanabe, A.S.2
Yamamoto, S.3
Sato, H.4
-
93
-
-
84655169785
-
Basidiobolus haptosporus is frequently associated with the gamasid mite Leptogamasus obesus
-
Werner S, Peršoh D, Rambold G. 2012. Basidiobolus haptosporus is frequently associated with the gamasid mite Leptogamasus obesus. Fungal Biology 116: 90-97.
-
(2012)
Fungal Biology
, vol.116
, pp. 90-97
-
-
Werner, S.1
Peršoh, D.2
Rambold, G.3
-
94
-
-
0000432452
-
Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
-
Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. London, UK: Academic Press
-
White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and applications. London, UK: Academic Press, 315-322.
-
(1990)
PCR protocols: a guide to methods and applications
, pp. 315-322
-
-
White, T.J.1
Bruns, T.2
Lee, S.3
Taylor, J.4
-
95
-
-
0347473523
-
Latitudinal gradients of biodiversity: pattern, process, scale, and synthesis
-
Willig MR, Kaufman DM, Stevens RD. 2003. Latitudinal gradients of biodiversity: pattern, process, scale, and synthesis. Annual Review of Ecology, Evolution, and Systematics 34: 273-309.
-
(2003)
Annual Review of Ecology, Evolution, and Systematics
, vol.34
, pp. 273-309
-
-
Willig, M.R.1
Kaufman, D.M.2
Stevens, R.D.3
-
96
-
-
82655174375
-
Soil fungal community structure along a soil health gradient in pea fields examined using deep amplicon sequencing
-
Xu L, Ravnskov S, Larsen J, Nilsson RH, Nicolaisen M. 2012. Soil fungal community structure along a soil health gradient in pea fields examined using deep amplicon sequencing. Soil Biology and Biochemistry 46: 26-32.
-
(2012)
Soil Biology and Biochemistry
, vol.46
, pp. 26-32
-
-
Xu, L.1
Ravnskov, S.2
Larsen, J.3
Nilsson, R.H.4
Nicolaisen, M.5
-
97
-
-
84864143923
-
Molecular characterization of root-associated fungal communities in relation to health status of Pisum sativum using barcoded pyrosequencing
-
Yu L, Nicolaisen M, Larsen J, Ravnskov S. 2012. Molecular characterization of root-associated fungal communities in relation to health status of Pisum sativum using barcoded pyrosequencing. Plant and Soil 357: 395-405.
-
(2012)
Plant and Soil
, vol.357
, pp. 395-405
-
-
Yu, L.1
Nicolaisen, M.2
Larsen, J.3
Ravnskov, S.4
-
98
-
-
34247575628
-
An overview of the systematics of the Sordariomycetes based on a four-gene phylogeny
-
Zhang N, Castlebury LA, Miller AN, Huhndorf SM, Schoch CL, Seifert KA, Rossman AY, Rogers JD, Kohlmeyer J, Volkmann-Kohlmeyer B et al. 2006. An overview of the systematics of the Sordariomycetes based on a four-gene phylogeny. Mycologia 98: 1076-1087.
-
(2006)
Mycologia
, vol.98
, pp. 1076-1087
-
-
Zhang, N.1
Castlebury, L.A.2
Miller, A.N.3
Huhndorf, S.M.4
Schoch, C.L.5
Seifert, K.A.6
Rossman, A.Y.7
Rogers, J.D.8
Kohlmeyer, J.9
Volkmann-Kohlmeyer, B.10
-
99
-
-
84864680957
-
Fungal endophyte communities reflect environmental structuring across a Hawaiian landscape
-
Zimmerman NB, Vitousek PM. 2012. Fungal endophyte communities reflect environmental structuring across a Hawaiian landscape. Proceedings of the National Academy of Sciences, USA 109: 13022-13027.
-
(2012)
Proceedings of the National Academy of Sciences, USA
, vol.109
, pp. 13022-13027
-
-
Zimmerman, N.B.1
Vitousek, P.M.2
|