메뉴 건너뛰기




Volumn 2, Issue 8, 2012, Pages 1935-1948

Fungal soil communities in a young transgenic poplar plantation form a rich reservoir for fungal root communities

Author keywords

Community ecology; Environmental DNA; Fungi; Genetically modified organisms; Metagenomics; Microbial biology

Indexed keywords


EID: 84874921990     PISSN: None     EISSN: 20457758     Source Type: Journal    
DOI: 10.1002/ece3.305     Document Type: Article
Times cited : (79)

References (53)
  • 2
    • 34247175933 scopus 로고    scopus 로고
    • Diversity and host range of foliar fungal endophytes: are tropical leaves biodiversity hotspots?
    • Arnold, A. E., and F. Lutzoni. 2007. Diversity and host range of foliar fungal endophytes: are tropical leaves biodiversity hotspots? Ecology 88:541-549
    • (2007) Ecology , vol.88 , pp. 541-549
    • Arnold, A.E.1    Lutzoni, F.2
  • 4
    • 12644283533 scopus 로고    scopus 로고
    • Red xylem and higher lignin extractability by down-regulating a cinnamyl alcohol dehydrogenase in poplar
    • Baucher, M., B. Chabbert, G. Pilate, J. van Doorsselaere, M. T Tollier, M. Petit-Conil, et al. 1996. Red xylem and higher lignin extractability by down-regulating a cinnamyl alcohol dehydrogenase in poplar. Plant Physiol 112:1479-1490
    • (1996) Plant Physiol , vol.112 , pp. 1479-1490
    • Baucher, M.1    Chabbert, B.2    Pilate, G.3    van Doorsselaere, J.4    Tollier, M.T.5    Petit-Conil, M.6
  • 5
    • 48449086633 scopus 로고    scopus 로고
    • Springer-Verlag, Berlin Heidelberg
    • Bayman, P. 2007. Fungal endophytes. Springer-Verlag, Berlin Heidelberg
    • (2007) Fungal endophytes
    • Bayman, P.1
  • 7
    • 0036306048 scopus 로고    scopus 로고
    • Plant-dependent genotypic and phenotypic diversity of antagonistic rhizobacteria isolated from different Verticillium host plants
    • Berg, G., N. Roskot, A. Steidle, L. Eberl, A. Zock, and K Smalla. 2002. Plant-dependent genotypic and phenotypic diversity of antagonistic rhizobacteria isolated from different Verticillium host plants. Appl. Environ. Microbiol 68:3328-3338
    • (2002) Appl. Environ. Microbiol , vol.68 , pp. 3328-3338
    • Berg, G.1    Roskot, N.2    Steidle, A.3    Eberl, L.4    Zock, A.5    Smalla, K.6
  • 8
    • 0028165672 scopus 로고
    • Abundance and diversity of microfungi in leaf-litter of a lowland rain-forest in Costa-Rica
    • Bills, G. F., and J. D. Polishook. 1994. Abundance and diversity of microfungi in leaf-litter of a lowland rain-forest in Costa-Rica. Mycologia 86:187-198
    • (1994) Mycologia , vol.86 , pp. 187-198
    • Bills, G.F.1    Polishook, J.D.2
  • 9
    • 0034954108 scopus 로고    scopus 로고
    • Soil fungi: diversity and detection
    • Bridge, P., and B. Spooner. 2001. Soil fungi: diversity and detection. Plant Soil 232:147-154
    • (2001) Plant Soil , vol.232 , pp. 147-154
    • Bridge, P.1    Spooner, B.2
  • 10
    • 70349482733 scopus 로고    scopus 로고
    • 454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity
    • Buee, M., M. Reich, C. Murat, E. Morin, R. H. Nilsson, S Uroz, et al. 2009. 454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity. New Phytol 184:449-456
    • (2009) New Phytol , vol.184 , pp. 449-456
    • Buee, M.1    Reich, M.2    Murat, C.3    Morin, E.4    Nilsson, R.H.5    Uroz, S.6
  • 11
    • 0033936017 scopus 로고    scopus 로고
    • Effects of ectomycorrhizas and vesicular-arbuscular mycorrhizas, alone or in competition, on root colonization and growth of Eucalyptus globulus and E. urophylla
    • Chen, Y. L., M. C. Brundrett, and B. Dell. 2000. Effects of ectomycorrhizas and vesicular-arbuscular mycorrhizas, alone or in competition, on root colonization and growth of Eucalyptus globulus and E. urophylla. New Phytol. 146: 545-555
    • (2000) New Phytol , vol.146 , pp. 545-555
    • Chen, Y.L.1    Brundrett, M.C.2    Dell, B.3
  • 12
    • 77954764245 scopus 로고    scopus 로고
    • EstimateS: statistical estimation of species richness and shared species from samples
    • (accessed June, 21 2012)
    • Collwell, R. K. 2006. EstimateS: statistical estimation of species richness and shared species from samples. Version 8.0. User′s guide and application. Available at http:// viceroy.eeb.uconn.edu/estimates/index.html (accessed June, 21, 2012)
    • (2006) Version 8. 0. User′s guide and application.
    • Collwell, R.K.1
  • 13
    • 79955781032 scopus 로고    scopus 로고
    • Beyond predictions: Biodiversity conservation in a changing climate (vol 332, pg 53 2011)
    • Dawson, T. P. 2011. Beyond predictions: Biodiversity conservation in a changing climate (vol 332, pg 53, 2011) Science 332:664-664
    • (2011) Science , vol.332 , pp. 664-1664
    • Dawson, T.P.1
  • 14
    • 0028160484 scopus 로고
    • Ectomycorrhizae, arbuscular mycorrhizae, and Rhizoctonia sp. of alpine and boreal Salix spp. in Norway
    • Dhillion, S. S. 1994. Ectomycorrhizae, arbuscular mycorrhizae, and Rhizoctonia sp. of alpine and boreal Salix spp. in Norway. Arct. Alp. Res. 26:304-307
    • (1994) Arct. Alp. Res. , vol.26 , pp. 304-307
    • Dhillion, S.S.1
  • 15
    • 67650473673 scopus 로고    scopus 로고
    • Beech carbon productivity as driver of ectomycorrhizal abundance and diversity
    • Druebert, C., C. Lang, K. Valtanen, and A. Polle. 2009. Beech carbon productivity as driver of ectomycorrhizal abundance and diversity. Plant Cell Environ. 32:992-1003
    • (2009) Plant Cell Environ , vol.32 , pp. 992-1003
    • Druebert, C.1    Lang, C.2    Valtanen, K.3    Polle, A.4
  • 16
    • 62049083345 scopus 로고    scopus 로고
    • Mycorrhizal communities in relation to biomass production and nutrient use efficiency in two varieties of Douglas fir (Pseudotsuga menziesii var. menziesii and var glauca) in different forest soils
    • Dučié, T., D. Berthold, R. Langenfeld-Heyser, F. Beese, and A Polle. 2009. Mycorrhizal communities in relation to biomass production and nutrient use efficiency in two varieties of Douglas fir (Pseudotsuga menziesii var. menziesii and var glauca) in different forest soils. Soil Biol. Biochem. 41: 742-753
    • (2009) Soil Biol. Biochem. , vol.41 , pp. 742-753
    • Dučié, T.1    Berthold, D.2    Langenfeld-Heyser, R.3    Beese, F.4    Polle, A.5
  • 17
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar, R. C. 2010. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26:2460-2461
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 18
    • 0035669970 scopus 로고    scopus 로고
    • Endo- and ecotmycorrhizas in Quercus agrifolia Nee (Fagaceae): Patterns of root colonization and effects on seedling growth
    • Egerton-Warburton, L., and M. F. Allen. 2001. Endo- and ecotmycorrhizas in Quercus agrifolia Nee. (Fagaceae): Patterns of root colonization and effects on seedling growth Mycorrhiza 11:283-290
    • (2001) Mycorrhiza , vol.11 , pp. 283-290
    • Egerton-Warburton, L.1    Allen, M.F.2
  • 19
    • 33846917645 scopus 로고    scopus 로고
    • Geomycology: Biogeochemical transformations of rocks, minerals, metals and radionuclides by fungi, bioweathering and bioremediation
    • Gadd, G. M. 2007. Geomycology: Biogeochemical transformations of rocks, minerals, metals and radionuclides by fungi, bioweathering and bioremediation. Mycol. Res 111:3-49
    • (2007) Mycol. Res , vol.111 , pp. 3-49
    • Gadd, G.M.1
  • 20
    • 0027580147 scopus 로고
    • ITS primers with enhanced specificity for Basidiomycetes - application to the identification of mycorrhizae and rusts
    • Gardes, M., and T. D. Bruns. 1993. ITS primers with enhanced specificity for Basidiomycetes - application to the identification of mycorrhizae and rusts. Mol. Ecol. 2: 113-118
    • (1993) Mol. Ecol. , vol.2 , pp. 113-118
    • Gardes, M.1    Bruns, T.D.2
  • 21
    • 80052769418 scopus 로고    scopus 로고
    • Distinct microbial communities within the endosphere and rhizosphere of populus deltoides roots across contrasting soil types
    • Gottel, N. R., H. F. Castro, M. Kerley, Z. M. Yang, D. A Pelletier, M. Podar, et al. 2011. Distinct microbial communities within the endosphere and rhizosphere of populus deltoides roots across contrasting soil types. Appl Environ. Microbiol. 77:5934-5944
    • (2011) Appl Environ. Microbiol. , vol.77 , pp. 5934-5944
    • Gottel, N.R.1    Castro, H.F.2    Kerley, M.3    Yang, Z.M.4    Pelletier, D.A.5    Podar, M.6
  • 25
    • 80755152405 scopus 로고    scopus 로고
    • Fifty years of marine mycology
    • Jones, E. B. G. 2011. Fifty years of marine mycology. Fungal Diversity 50:73-112
    • (2011) Fungal Diversity , vol.50 , pp. 73-112
    • Jones, E.B.G.1
  • 26
    • 70349493057 scopus 로고    scopus 로고
    • Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere
    • Jumpponen, A., and K. L. Jones. 2009. Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere. New Phytol 184:438-448
    • (2009) New Phytol , vol.184 , pp. 438-448
    • Jumpponen, A.1    Jones, K.L.2
  • 27
    • 77951924594 scopus 로고    scopus 로고
    • Massively parallel 454-sequencing of fungal communities in Quercus spp. ectomycorrhizas indicates seasonal dynamics in urban and rural sites
    • Jumpponen, A., K. L. Jones, J. D. Mattox, and C. Yaege. 2010 Massively parallel 454-sequencing of fungal communities in Quercus spp. ectomycorrhizas indicates seasonal dynamics in urban and rural sites. Mol. Ecol. 19:41-53
    • (2010) Mol. Ecol. , vol.19 , pp. 41-53
    • Jumpponen, A.1    Jones, K.L.2    Mattox, J.D.3    Yaege, C.4
  • 28
    • 8744239566 scopus 로고    scopus 로고
    • Characterization and spatial distribution of ectomycorrhizas colonizing aspen clones released in an experimental field
    • Kaldorf, M., C. Renker, M. Fladung, and F. Buscot. 2004 Characterization and spatial distribution of ectomycorrhizas colonizing aspen clones released in an experimental field Mycorrhiza 14:295-306
    • (2004) Mycorrhiza , vol.14 , pp. 295-306
    • Kaldorf, M.1    Renker, C.2    Fladung, M.3    Buscot, F.4
  • 29
    • 77952951520 scopus 로고    scopus 로고
    • Relationship between genotype and soil environment during colonization of poplar roots by mycorrhizal and endophytic fungi
    • Karlinski, L., M. Rudawska, B. Kieliszewska-Rokicka, and T Leski. 2010. Relationship between genotype and soil environment during colonization of poplar roots by mycorrhizal and endophytic fungi. Mycorrhiza 20: 315-324
    • (2010) Mycorrhiza , vol.20 , pp. 315-324
    • Karlinski, L.1    Rudawska, M.2    Kieliszewska-Rokicka, B.3    Leski, T.4
  • 30
    • 68149139733 scopus 로고    scopus 로고
    • Root tip competition among ectomycorrhizal fungi: are priority effects a rule or an exception?
    • Kennedy, P. G., K. G. Peay, and T. D. Bruns. 2009. Root tip competition among ectomycorrhizal fungi: are priority effects a rule or an exception? Ecology 90:2098-2107
    • (2009) Ecology , vol.90 , pp. 2098-2107
    • Kennedy, P.G.1    Peay, K.G.2    Bruns, T.D.3
  • 32
    • 79956127892 scopus 로고    scopus 로고
    • Identification of quantitative trait loci affecting ectomycorrhizal symbiosis in an interspecific poplar cross and differential expression of genes in ecotmycorrhizas of the two parents Populus deltoides and Populus trichocarpa Tree Genet
    • Labbé, J., V. Jorge, A. Kohler, P. Vion, B. Marcais, C. Bastien, et al. 2011. Identification of quantitative trait loci affecting ectomycorrhizal symbiosis in an interspecific poplar cross and differential expression of genes in ecotmycorrhizas of the two parents Populus deltoides and Populus trichocarpa Tree Genet. Genomes 7:617-627
    • (2011) Genomes , vol.7 , pp. 617-627
    • Labbé, J.1    Jorge, V.2    Kohler, A.3    Vion, P.4    Marcais, B.5    Bastien, C.6
  • 33
    • 79955006418 scopus 로고    scopus 로고
    • Host preferences and differential contributions of deciduous tree species shape mycorrhizal species richness in a mixed Central European forest
    • Lang, C., J. Seven, and A. Polle. 2011. Host preferences and differential contributions of deciduous tree species shape mycorrhizal species richness in a mixed Central European forest. Mycorrhiza 21:297-308
    • (2011) Mycorrhiza , vol.21 , pp. 297-308
    • Lang, C.1    Seven, J.2    Polle, A.3
  • 34
    • 0032840888 scopus 로고    scopus 로고
    • Structural alterations of lignins in transgenic poplars with depressed cinnamyl alcohol dehydrogenase or caffeic acid O-methyltransferase activity have an opposite impact on the efficiency of industrial kraft pulping
    • Lapierre, C., B. Pollet, M. Petit-Conil, G. Toval, J. Romero, G. Pilate, et al. 1999. Structural alterations of lignins in transgenic poplars with depressed cinnamyl alcohol dehydrogenase or caffeic acid O-methyltransferase activity have an opposite impact on the efficiency of industrial kraft pulping. Plant Physiol. 119: 153-163
    • (1999) Plant Physiol , vol.119 , pp. 153-163
    • Lapierre, C.1    Pollet, B.2    Petit-Conil, M.3    Toval, G.4    Romero, J.5    Pilate, G.6
  • 35
    • 0001339282 scopus 로고
    • Transgenic poplars - expression of chimeric genes using 4 different constructs
    • Leple, J. C., A. C. M. Brasileiro, M. F. Michel, F. Delmotte, and L. Jouanin. 1992. Transgenic poplars - expression of chimeric genes using 4 different constructs. Plant Cell Rep 11:137-141
    • (1992) Plant Cell Rep , vol.11 , pp. 137-141
    • Leple, J.C.1    Brasileiro, A.C.M.2    Michel, M.F.3    Delmotte, F.4    Jouanin, L.5
  • 36
    • 0030840596 scopus 로고    scopus 로고
    • Agricultural intensification and ecosystem properties
    • Matson, P. A., W. J. Parton, A. G. Power, and M. J. Swift 1997. Agricultural intensification and ecosystem properties Science 277:504-509
    • (1997) Science , vol.277 , pp. 504-509
    • Matson, P.A.1    Parton, W.J.2    Power, A.G.3    Swift, M.J.4
  • 38
    • 0009011409 scopus 로고
    • Mycophagy in grasshoppers (Orthoptera Acrididae) in Indo-Malayan rain forests
    • Monk, K. A., and G. J. Samuels. 1990. Mycophagy in grasshoppers (Orthoptera, Acrididae) in Indo-Malayan rain forests. Biotropica 22:16-21
    • (1990) Biotropica , vol.22 , pp. 16-21
    • Monk, K.A.1    Samuels, G.J.2
  • 40
    • 77749260569 scopus 로고    scopus 로고
    • Girdling affects ectomycorrhizal fungal (EMF) diversity and reveals functional differences in EMF community composition in a beech forest
    • Pena, R., C. Offermann, J. Simon, P. S. Naumann, A Gessler, J. Holst, et al. 2010. Girdling affects ectomycorrhizal fungal (EMF) diversity and reveals functional differences in EMF community composition in a beech forest. Appl. Environ. Microbiol. 76: 1831-1841
    • (2010) Appl. Environ. Microbiol. , vol.76 , pp. 1831-1841
    • Pena, R.1    Offermann, C.2    Simon, J.3    Naumann, P.S.4    Gessler, A.5    Holst, J.6
  • 41
    • 34250204485 scopus 로고    scopus 로고
    • A phylogenetic overview of the family Pyronemataceae (Ascomycota Pezizales)
    • Perry, B. A., K. Hansen, and D. H. Pfister. 2007. A phylogenetic overview of the family Pyronemataceae (Ascomycota, Pezizales). Mycol. Res. 111:549-571
    • (2007) Mycol. Res. , vol.111 , pp. 549-571
    • Perry, B.A.1    Hansen, K.2    Pfister, D.H.3
  • 42
    • 0034765868 scopus 로고    scopus 로고
    • Above- and below-ground community structure of ectomycorrhizal fungi in three Norway spruce (Picea abies) stands in Switzerland
    • Peter, M., F. Ayer, S. Egli, and R. Honegger. 2001. Above- and below-ground community structure of ectomycorrhizal fungi in three Norway spruce (Picea abies) stands in Switzerland. Can. J. Bot. 79:1134-1151
    • (2001) Can. J. Bot. , vol.79 , pp. 1134-1151
    • Peter, M.1    Ayer, F.2    Egli, S.3    Honegger, R.4
  • 44
    • 77952532061 scopus 로고    scopus 로고
    • The molecular physiology of poplars: Paving the way for knowledge-based biomass production
    • Polle, A., and C. Douglas. 2010. The molecular physiology of poplars: Paving the way for knowledge-based biomass production. Plant Biol. 12:239-241
    • (2010) Plant Biol , vol.12 , pp. 239-241
    • Polle, A.1    Douglas, C.2
  • 45
    • 84890270930 scopus 로고    scopus 로고
    • R., Development Core, Team. R: a language and environment for statistical computing. (ed. Computing RFfS) R Foundation for Statistical Computing, Vienna
    • R Development Core Team. 2009. R: a language and environment for statistical computing. (ed. Computing RFfS), R Foundation for Statistical Computing, Vienna
    • (2009)
  • 46
    • 77956769404 scopus 로고    scopus 로고
    • Saprophytic fungal communities change in diversity and species composition across a volcanic soil chronosequence at Sierra del Chichinautzin
    • Reverchon, F., P. M. del Ortega-Larrocea, and J. Perez-Moreno. 2010. Saprophytic fungal communities change in diversity and species composition across a volcanic soil chronosequence at Sierra del Chichinautzin, Mexico. Ann Microbiol. 60:217-226
    • (2010) Mexico. Ann Microbiol. , vol.60 , pp. 217-226
    • Reverchon, F.1    del Ortega-Larrocea, P.M.2    Perez-Moreno, J.3
  • 48
    • 22144450677 scopus 로고    scopus 로고
    • The endophytic continuum
    • Schulz, B., and C. Boyle. 2005. The endophytic continuum Mycol. Res. 109:661-686
    • (2005) Mycol Res , vol.109 , pp. 661-686
    • Schulz, B.1    Boyle, C.2
  • 50
    • 72949089067 scopus 로고    scopus 로고
    • Impact of an 8-year-old transgenic poplar plantation on the ectomycorrhizal fungal community
    • Stefani, F. O. P., J. M. Moncalvo, A. Seguin, J. A. Berube, and R. C. Hamelin. 2009. Impact of an 8-year-old transgenic poplar plantation on the ectomycorrhizal fungal community. Appl. Environ. Microbiol. 75: 7527-7536
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 7527-7536
    • Stefani, F.O.P.1    Moncalvo, J.M.2    Seguin, A.3    Berube, J.A.4    Hamelin, R.C.5
  • 51
    • 0026261665 scopus 로고
    • Universal primers for amplification of 3 noncoding regions of chloroplast DNA
    • Taberlet, P., L. Gielly, G. Pautou, and J. Bouvet. 1991 Universal primers for amplification of 3 noncoding regions of chloroplast DNA. Plant Mol. Biol. 17:1105-1109
    • (1991) Plant Mol. Biol. , vol.17 , pp. 1105-1109
    • Taberlet, P.1    Gielly, L.2    Pautou, G.3    Bouvet, J.4
  • 52
    • 0035103963 scopus 로고    scopus 로고
    • Variation in the ability to form ectomycorrhizas in the F1 progeny of an interspecific poplar (Populus spp) cross
    • Tagu, D., P. Faivre Rampant, F. Lapeyrie, P. Frey-Klett, P Vion, and M. Villar. 2001. Variation in the ability to form ectomycorrhizas in the F1 progeny of an interspecific poplar (Populus spp.) cross. Mycorrhiza 10:237-240
    • (2001) Mycorrhiza , vol.10 , pp. 237-240
    • Tagu, D.1    Faivre Rampant, P.2    Lapeyrie, F.3    Frey-Klett, P.4    Vion, P.5    Villar, M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.