Mycology should be recognized as a field in biology at eye level with other major disciplines - a memorandum

Mycological Progress

Volumn 12, Issue 3, 2013, Pages 455-463

  Rambold, Gerhard ^a   Stadler, Marc ^b   Begerow, Dominik ^c  

^a UNIVERSITY OF BAYREUTH   (Germany)

^b TECHNICAL UNIVERSITY OF BRAUNSCHWEIG   (Germany)

^c RUHR UNIVERSITY BOCHUM   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

FUNGI;

EID: 84880171847     PISSN: 1617416X     EISSN: 18618952     Source Type: Journal    
DOI: 10.1007/s11557-013-0902-x     Document Type: Review

References (59)

1. Begerow D, Stoll M, Bauer R (2006) A phylogenetic hypothesis of Ustilaginomycotina based on multiple gene analyses and morphological data. Mycologia 98: 906-916.
2. Belnap, J, Lange, OL (2005) Biological soil crust: Structure, function and management. Ecological Studies 150. Springer Verlag 503 pp.
3. Bergmann S, Funk AN, Scherlach K, Schroeckh V, Shelest E, Horn U, Hertweck C, Brakhage AA (2010) Activation of a silent fungal polyketide biosynthesis pathway through regulatory cross talk with a cryptic nonribosomal peptide synthetase gene cluster. Appl Environ Microbiol 76: 8143-8149.
4. Bitzer J, Köpcke B, Stadler M, Hellwig V, Ju YM, Seip S, Henkel T (2007) Accelerated dereplication of natural products, supported by reference libraries. Chimia 51: 332-338.
5. Blackwell M (2011) The Fungi: 1, 2, 3 ... 5. 1 million species? Am J Bot 98: 426-438.
6. Bush RK, Portnoy JM, Saxon A, Terr AI, Wood RA (2006) The medical effects of mold exposure. J Allergy Clin Immunol 117: 326-333.
7. Casadevall A (2012) Fungi and the rise of mammals. PLOS Pathogens 8: e1002808.
8. Espagne E, Lespinet O, Malagnac F, Da Silva C, Jaillon O, Porcel BM, Couloux A, Aury J-M, Ségurens B, Poulain J, Anthouard V, Grossetete S, Khalili H, Coppin E, Déquard-Chablat M, Picard M, Contamine V, Arnaise S, Bourdais A, Berteaux-Lecellier V, Gautheret D, de Vries RP, Battaglia E, Coutinho PM, Danchin EGJ, Henrissat B, Khoury REL, Sainsard-Chanet A, Boivin A, Pinan-Lucarré B, Sellem CH, Debuchy R, Wincker P, Weissenbach J, Silar P (2008) The genome sequence of the model ascomycete fungus Podospora anserina. Genome Biol 9: R77. doi: 10. 1186/gb-2008-9-5-r77.
9. Cardoza YJ, Moser JC, Klepzig KD, Raffa KF (2008) Multipartite symbioses among fungi, mites, nematodes, and the spruce beetle, Dendroctonus rufipennis. Environ Entomol 37(4): 956-963.
10. Chapman AD (2009) Numbers of living species in Australia and the World 2nd edition. - A Report for the Australian Biological Resources Study. Australian Biodiversity Information Services, Toowoomba, Australia 1-84.
11. Dean R, van Kan JAL, Pretorius ZA, Hammond-Kosack KE, di Pietro A, Spanu PD, Rudd JJ, Dickman M, Kahmann R, Ellis J, Foster GD (2012) The top 10 fungal pathogens in molecular plant pathology. Mol Plant Pathol 13: 414-430.
12. Elander RP (2003) Industrial production of beta-lactam antibiotics. Appl Microbiol Biotechnol 61: 385-392.
13. Engels B, Heinig U, Grothe T, Stadler M, Jennewein S (2011) Cloning and characterization of an Armillaria gallica cDNA encoding protoilludene synthase, which catalyzes the first committed step in the synthesis of antimicrobial melleolides. J Biol Chem 286: 6871-6878.
14. Floudas D, Binder M, Riley R, Barry K, Blanchette RA, Henrissat B, Martínez AT, Otillar R, Spatafora JW, Yadav JS, Aerts A, Benoit I, Boyd A, Carlson A, Copeland A, Coutinho PM, de Vries RP, Ferreira P, Findley K, Foster B, Gaskell J, Glotzer D, Górecki P, Heitman J, Hesse C, Hori C, Igarashi K, Jurgens JA, Kallen N, Kersten P, Kohler A, Kües U, Kumar TKA, Kuo A, LaButti K, Larrondo LF, Lindquist E, Ling A, Lombard V, Lucas S, Lundell T, Martin R, McLaughlin DJ, Morgenstern I, Morin E, Murat C, Nagy LG, Nolan M, Ohm RA, Patyshakuliyeva A, Rokas A, Ruiz-Dueñas FJ, Sabat G, Salamov A, Samejima M, Schmutz J, Slot JC, John FS, Stenlid J, Sun H, Sun S, Syed K, Tsang A, Wiebenga A, Young D, Pisabarro A, Eastwood DC, Martin F, Cullen D, Grigoriev IV, Hibbett DS (2012) The paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science 336(6089): 1715-1719.
15. Fröhlich-Nowoisky J, Burrows SM, Xie Z, Engling G, Solomon PA, Fraser MP, Mayol-Bracero OL, Artaxo P, Begerow D, Conrad R, Andreae MO, Després VR, Pöschl U (2012) Biogeography in the air: fungal diversity over land and oceans. Biogeosciences 9: 1125-1136.
16. Gianinazzi S, Gollotte A, Binet MN, van Tuinen D, Redecker D, Wipf D (2010) Agroecology: the key role of arbuscular mycorrhizas in ecosystem services. Mycorrhiza 20: 519-530.
17. Gioulekas D, Damialis A, Papakosta D, Spieksma F, Giouleka P, Patakas D (2004) Allergenic fungi spore records (15 years) and sensitization in patients with respiratory allergy in Thessaloniki-Greece. J Investig Allergol Clin Immunol 14: 225-231.
18. Gosio B (1896) Ricerche batteriologiche e chimiche sulle alterazioni del mais. Contributo all'etiologia della pellagra. Rivista d'Igiene e Sanità Pubblica 7(21): 484-487.
19. Haynes KA, Westerneng TJ, Fell JW, Moens W (1995) Rapid detection and identification of pathogenic fungi by polymerase chain reaction amplification of large subunit ribosomal DNA. J Med Vet Mycol 33(5): 319-325.
20. Hawksworth DL (2001) The magnitude of fungal diversity: the 1. 5 million species estimate revisited. Mycol Res 105: 1422-1432.
21. Hebert PDN, Cywinska A, Ball SL, deWaard JR (2003) Biological identifications through DNA barcodes. Proc R Soc Lond B 270: 313-322.
22. Horner WE, Helbling A, Salvaggio JE, Lehrer SB (1995) Fungal allergens. Clin Microbiol Rev 8: 161-179.
23. Kahmann R, Kämper J (2004) Ustilago maydis: How its biology relates to pathogenic development. New Phytol 164: 31-42.
24. Kellner R, Vollmeister E, Feldbrügge M, Begerow D (2011) Interspecific sex in grass smuts and the genetic diversity of their pheromone-receptor system. PLoS Genet 7(12): e1002436. doi: 10. 1371/journal. pgen. 1002436.
25. Kemler M, Martin MP, Telleria MT, Schäfer AM, Yurkov A, Begerow D (2012) Contrasting phylogenetic patterns of anther smuts (Pucciniomycotina: Microbotryum) reflect phylogenetic patterns of their caryophyllaceous hosts. Org Divers Evol. doi: 10. 1007/s13127-012-0115-1.
26. Kloppholz S, Kuhn H, Requena N (2011) A secreted fungal effector of Glomus intraradices promotes symbiotic biotrophy. Curr Biol 21: 1204-1209.
27. Kurup VP, Banerjee B, Hemmann S, Greenberger PA, Blaser K, Crameri R (2000) Selected recombinant Aspergillus fumigatus allergens bind specifically to IgE in ABPA. Clin Exp Allergy 30: 988-993.
28. Kües U, Rühl M (2011) Multiple multi-copper oxidase gene families in basidiomycetes-what for? Curr Gen 12: 72-94.
29. Laatsch H (2012) AntiBase 2012 The natural compound identifier. Wiley-VCH Verlag GmbH & Co, KGaA.
30. Martínez-Espinoza AD, García-Pedajas MD, Gold SE (2002) The Ustilaginales as plant pests and model systems. Fungal Gen Biol 35: 1-20.
31. Meinke PT, Smith MM, Shoop WL (2002) Nodulisporic acid: its chemistry and biology. Curr Top Med Chem 2: 655-674.
32. Mueller UG, Wolfenbarger LL (1999) AFLP genotyping and fingerprinting. Tree 14(10): 389-394.
33. Mueller UG, Gerardo N (2002) Fungus-farming insects: multiple origins and diverse evolutionary histories. PNAS 99: 15247-15249.
34. Nowrousia M, Stajich JE, Chu M, Engh I, Espagne E, Halliday K, Kamerewerd J, Kempken F, Knab B, Kuo H-C, Osiewacz HD, Pöggeler S, Read ND, Seiler S, Smith KM, Zickler D, Kück U, Freitag M (2010) De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis. PLoS Genetics 6: e1000891. doi: 10. 1371/journal. pgen. 1000891.
35. Oberwinkler F, Riess K, Bauer R, Selosse MA, Weiß M, Garnica S, Zuccaro A (2013) Enigmatic Sebacinales. Mycol Prog 12: 1-27. doi: 10. 1007/s11557-012-0880-4.
36. Paul EA (2007) Soil microbiology, ecology, and biochemistry. Academic, Oxford, 532 pp.
37. Peršoh D, Theuerl S, Buscot F, Rambold G (2008) Towards a universally adaptable method for quantitative extraction of high-purity nucleic acids from soil. J Microbiol Methods 75: 19-24.
38. Peršoh D, Weig A, Rambold G (2012) A transcriptome-targeting EcoChip for assessing functional mycodiversity. Microarrays 1: 25-41.
39. Peršoh D (2013) Factors shaping community structure of endophytic fungi - evidence from the Pinus-Viscum-system, Fungal Diversity, doi: 10. 1007/s13225-013-0225-x.
40. Rossman AY (2003) A strategy for an all taxa inventory of fungal biodiversity. Chapter 14, p. 169-194 in Peng C-I & Chou CH (eds.), Biodiversity and Terrestrial Ecosystems. Inst. Botany, Acad. Sinica Monograph Series 14.
41. Schardl CL, Leuchtmann A, Spiering MJ (2004) Symbioses of grasses with seedborne fungal endophytes. Annu Rev Plant Biol 55: 315-340.
42. Scherkenbeck J, Jeschke P, Harder A (2002) PF1022A and related cyclodepsipeptides - a novel class of anthelmintics. Curr Top Med Chem 2: 759-777.
43. Schleifer K-H, Amann R, Ludwig W, Rothemund C, Springer N, Dorn S (1992) Nucleic acid probes for the identification and in situ detection of pseudomonads. In: Galli E, Dilver S, Witholt S (eds) Pseudomonas: Molecular biology and biotechnology. American Society for Microbiology, Washington DC, pp 127-134.
44. Singh RP, Hodson PD, Huerta-Espino J, Jin Y, Njau P, Wanyera R, Herrera-Foessel SA, Ward RW (2008) Will stem rust destroy the world's wheat crop? Adv Agron 98: 271-309.
45. Smith ML, Bruhn JN, Anderson JB (1992) The fungus Armillaria bulbosa is among the largest and oldest living organisms. Nature 356: 428-431.
46. Smith KM, Phatale PA, Bredeweg EL, Connolly LC, Pomraning KR, Freitag M (2012) Epigenetics of filamentous fungi. Wiley Online Library. doi: 10. 1002/3527600906. mcb. 201100035.
47. Stadler M, Schulz B (2009) High energy biofuel from endophytic fungi? Trends Plant Sci 14: 353-355.
48. Stadler M, Quang DN, Tomita A, Hashimoto T, Asakawa Y (2006) Production of bioactive metabolites during stromatal ontogeny of Hypoxylon fragiforme. Mycol Res 110: 811-820.
49. Suh SO, McHugh JV, Pollock DD, Blackwell M (2005) The beetle gut: a hyperdiverse source of novel yeasts. Mycol Res 109: 261-265.
50. Tautz D, Arctander P, Minelli A, Thomas RH, Vogler AP (2003) A plea for DNA taxonomy. Trends Ecol Evol 18: 70-74.
51. Tikhonovich IA, Provorov NA (2011) Microbiology is the basis of sustainable agriculture: an opinion. Ann Appl Biol 159: 155-168.
52. Unterseher M (2011) Diversity of fungal Endophytes in temperate forest trees, p. 31-46. In Pirttilä AM, Frank AC (eds), Endophytes of forest trees: Biology and applications (Forestry Sciences 80). Springer 319 pp.
53. van Elsas JD, Duarte GF, Keijzer-Wolters A, Smit E (2000) Analysis of the dynamics of fungal communities in soil via fungal-specific PCR of soil DNA followed by denaturing gradient gel electrophoresis. J Microbiol Methods 43(2): 133-151.
54. Wagner M, Amann R, Kämpfer P, Assmus B, Harstmann A, Hutzler P, Springer N, Schleifer K-H (1994) Identification and in situ detection of gram-negative filamentous bacteria in activated sludge. Syst Appl Microbiol 17: 405-417.
55. Weig A, Peršoh D, Werner S, Betzlbacher A, Rambold G (2013) Diagnostic assessment of mycodiversity in environmental samples by fungal ITS1 rDNA length polymorphism. Mycological Progress. doi: 10. 1007%2Fs11557-012-0883-1.
56. Weiß M, Sýkorová Z, Garnica S, Riess K, Martos F, Krause C, Oberwinkler F, Bauer R, Redecker D (2011) Sebacinales everywhere: previously overlooked Ubiquitous Fungal Endophytes. PLoS One 6(2): e16793. doi: 10. 1371/journal. pone. 0016793.
57. White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR Protocols. Academic, San Diego, p 315.
58. Wubet T, Christ D, Schöning I, Boch S, Gawlich M, Schnabel B, Fischer M, Buscot F (2012) Differences in soil fungal communities between European beech (Fagus sylvatica L.) dominated forests are related to soil and understory vegetation. PLoS One 7(10): e47500.
59. Yuan X, Xiao S, Taylor TN (2005) Lichen-like symbiosis 600 million years ago. Science 308: 1017-1020.