메뉴 건너뛰기




Volumn 62, Issue S1, 2013, Pages 10-18

Plant RNA virus fitness predictability: Contribution of genetic and environmental factors

Author keywords

Emerging viruses; Epistasis; Mutational effects; Pleiotropy; Reaction norms; Virus evolution

Indexed keywords

ENVIRONMENTAL FACTOR; EPISTASIS; FITNESS; GENETIC VARIATION; GENOME; HOST-PATHOGEN INTERACTION; MUTATION; PLANT; PLEIOTROPY; PREDICTION; RNA; TAXONOMY; VIRUS;

EID: 84890435377     PISSN: 00320862     EISSN: 13653059     Source Type: Journal    
DOI: 10.1111/ppa.12102     Document Type: Article
Times cited : (14)

References (42)
  • 3
    • 34248209204 scopus 로고    scopus 로고
    • Molecular dissection of the Potato virus Y VPg virulence factor reveals complex adaptations to the pvr2 resistance allelic series in pepper
    • Ayme V, Petit-Pierre J, Souche S, Palloix A, Moury B, 2007. Molecular dissection of the Potato virus Y VPg virulence factor reveals complex adaptations to the pvr2 resistance allelic series in pepper. Journal of General Virology 88, 1594-601.
    • (2007) Journal of General Virology , vol.88 , pp. 1594-1601
    • Ayme, V.1    Petit-Pierre, J.2    Souche, S.3    Palloix, A.4    Moury, B.5
  • 4
    • 84862843329 scopus 로고    scopus 로고
    • Multihost experimental evolution of a plant RNA virus reveals local adaptation and host-specific mutations
    • Bedhomme S, Lafforgue G, Elena SF, 2012. Multihost experimental evolution of a plant RNA virus reveals local adaptation and host-specific mutations. Molecular Biology and Evolution 29, 1481-92.
    • (2012) Molecular Biology and Evolution , vol.29 , pp. 1481-1492
    • Bedhomme, S.1    Lafforgue, G.2    Elena, S.F.3
  • 5
    • 36348963100 scopus 로고    scopus 로고
    • Distribution of fitness and virulence effects caused by single-nucleotide substitutions in Tobacco etch virus
    • Carrasco P, de la Iglesia F, Elena SF, 2007. Distribution of fitness and virulence effects caused by single-nucleotide substitutions in Tobacco etch virus. Journal of Virology 81, 12979-84.
    • (2007) Journal of Virology , vol.81 , pp. 12979-12984
    • Carrasco, P.1    de la Iglesia, F.2    Elena, S.F.3
  • 8
    • 77954499525 scopus 로고    scopus 로고
    • Multiple peaks and reciprocal sign epistasis in an empirically determined genotype-phenotype landscape
    • Dawid A, Kiviet DJ, Kogeranu M, de Vos M, Tans SJ, 2010. Multiple peaks and reciprocal sign epistasis in an empirically determined genotype-phenotype landscape. Chaos 20, 026105.
    • (2010) Chaos , vol.20 , pp. 026105
    • Dawid, A.1    Kiviet, D.J.2    Kogeranu, M.3    de Vos, M.4    Tans, S.J.5
  • 9
    • 0009901903 scopus 로고    scopus 로고
    • An introduction to the evolutionary ecology of viruses
    • Hurst CJ, ed. New York, USA: Academic Press
    • DeFillipis EC, Villarreal LP, 2000. An introduction to the evolutionary ecology of viruses. In: Hurst CJ, ed. Viral Ecology. New York, USA: Academic Press, 126-208.
    • (2000) Viral Ecology , pp. 126-208
    • DeFillipis, E.C.1    Villarreal, L.P.2
  • 10
    • 84924919448 scopus 로고    scopus 로고
    • Simple genomes, complex interactions: epistasis in RNA virus
    • Elena SF, Solé RV, Sardanyés J, 2010. Simple genomes, complex interactions: epistasis in RNA virus. Chaos 20, 026106.
    • (2010) Chaos , vol.20 , pp. 026106
    • Elena, S.F.1    Solé, R.V.2    Sardanyés, J.3
  • 11
    • 79951520544 scopus 로고    scopus 로고
    • The evolutionary genetics of emerging plant RNA viruses. Molecular Plant-Microbe
    • Elena SF, Bedhomme S, Carrasco P et al., 2011. The evolutionary genetics of emerging plant RNA viruses. Molecular Plant-Microbe Interactions 24, 287-93.
    • (2011) Interactions , vol.24 , pp. 287-293
    • Elena, S.F.1    Bedhomme, S.2    Carrasco, P.3
  • 14
    • 1842475949 scopus 로고    scopus 로고
    • Evolution of multihost parasites
    • Gandon S, 2004. Evolution of multihost parasites. Evolution 58, 455-69.
    • (2004) Evolution , vol.58 , pp. 455-469
    • Gandon, S.1
  • 15
    • 0024495795 scopus 로고
    • Genotype-environment interactions and the maintenance of polygenic variation
    • Gillespie JH, Turelli M, 1989. Genotype-environment interactions and the maintenance of polygenic variation. Genetics 121, 129-38.
    • (1989) Genetics , vol.121 , pp. 129-138
    • Gillespie, J.H.1    Turelli, M.2
  • 19
    • 0036076061 scopus 로고    scopus 로고
    • A fitness cost for Turnip mosaic virus to overcome host resistance
    • Jenner CE, Wang X, Ponz F, Walsh JA, 2002. A fitness cost for Turnip mosaic virus to overcome host resistance. Virus Research 86, 1-6.
    • (2002) Virus Research , vol.86 , pp. 1-6
    • Jenner, C.E.1    Wang, X.2    Ponz, F.3    Walsh, J.A.4
  • 20
    • 63949084990 scopus 로고    scopus 로고
    • Plant virus emergence and evolution: origins, new encounter scenarios, factors driving emergence, effects of changing world conditions, and prospects for control
    • Jones RAC, 2009. Plant virus emergence and evolution: origins, new encounter scenarios, factors driving emergence, effects of changing world conditions, and prospects for control. Virus Research 141, 113-30.
    • (2009) Virus Research , vol.141 , pp. 113-130
    • Jones, R.A.C.1
  • 21
    • 0028321230 scopus 로고
    • Accumulation of deleterious mutations and the evolutionary cost of being generalist
    • Kawecki TJ, 1994. Accumulation of deleterious mutations and the evolutionary cost of being generalist. The American Naturalist 144, 833-8.
    • (1994) The American Naturalist , vol.144 , pp. 833-838
    • Kawecki, T.J.1
  • 24
    • 84864290431 scopus 로고    scopus 로고
    • Magnitude and sign epistasis among deleterious mutations in a positive-sense plant RNA virus
    • Lalić J, Elena SF, 2012. Magnitude and sign epistasis among deleterious mutations in a positive-sense plant RNA virus. Heredity 109, 71-7.
    • (2012) Heredity , vol.109 , pp. 71-77
    • Lalić, J.1    Elena, S.F.2
  • 25
    • 84872029541 scopus 로고    scopus 로고
    • Epistasis between mutations is host-dependent for an RNA virus
    • Lalić J, Elena SF, 2013. Epistasis between mutations is host-dependent for an RNA virus. Biology Letters 9, 20120396.
    • (2013) Biology Letters , vol.9 , pp. 20120396
    • Lalić, J.1    Elena, S.F.2
  • 26
    • 81755177852 scopus 로고    scopus 로고
    • Effect of host species on the distribution of mutational fitness effects for an RNA virus
    • Lalić J, Cuevas JM, Elena SF, 2011. Effect of host species on the distribution of mutational fitness effects for an RNA virus. PLoS Genetics 7, e1002378.
    • (2011) PLoS Genetics , vol.7
    • Lalić, J.1    Cuevas, J.M.2    Elena, S.F.3
  • 27
    • 34047099379 scopus 로고    scopus 로고
    • Distribution of epistasis in microbes fit predictions from a fitness landscape model
    • Martin G, Elena SF, Lenormand T, 2007. Distribution of epistasis in microbes fit predictions from a fitness landscape model. Nature Genetics 39, 555-60.
    • (2007) Nature Genetics , vol.39 , pp. 555-560
    • Martin, G.1    Elena, S.F.2    Lenormand, T.3
  • 28
    • 80055108515 scopus 로고    scopus 로고
    • Genetic background matters: a plant-virus gene-for-gene interaction is strongly influenced by genetic contexts
    • Montarry J, Doumayrou J, Simon V, Moury B, 2011. Genetic background matters: a plant-virus gene-for-gene interaction is strongly influenced by genetic contexts. Molecular Plant Pathology 12, 911-20.
    • (2011) Molecular Plant Pathology , vol.12 , pp. 911-920
    • Montarry, J.1    Doumayrou, J.2    Simon, V.3    Moury, B.4
  • 30
    • 84869139621 scopus 로고    scopus 로고
    • Understanding specialism when the jack of all trades can be the master of all
    • Remold SK, 2012. Understanding specialism when the jack of all trades can be the master of all. Proceeding of the Royal Society B 279, 4861-9.
    • (2012) Proceeding of the Royal Society B , vol.279 , pp. 4861-4869
    • Remold, S.K.1
  • 31
    • 0035949692 scopus 로고    scopus 로고
    • Contribution of individual random mutations to genotype-to-environment interactions in Escherichia coli
    • Remold SK, Lenski RE, 2001. Contribution of individual random mutations to genotype-to-environment interactions in Escherichia coli. Proceedings of the National Academy of Sciences, USA 98, 11388-93.
    • (2001) Proceedings of the National Academy of Sciences, USA , vol.98 , pp. 11388-11393
    • Remold, S.K.1    Lenski, R.E.2
  • 32
    • 30144442373 scopus 로고    scopus 로고
    • Translation initiation factors: a weak link in plant RNA virus infection
    • Robaglia C, Caranta C, 2006. Translation initiation factors: a weak link in plant RNA virus infection. Trends in Plant Sciences 11, 40-5.
    • (2006) Trends in Plant Sciences , vol.11 , pp. 40-45
    • Robaglia, C.1    Caranta, C.2
  • 33
    • 0000175262 scopus 로고
    • The sampling variance of the genetic correlation coefficient
    • Robertson A, 1959. The sampling variance of the genetic correlation coefficient. Biometrics 15, 469-85.
    • (1959) Biometrics , vol.15 , pp. 469-485
    • Robertson, A.1
  • 34
    • 77954324311 scopus 로고    scopus 로고
    • Mutational fitness effects in RNA and single-stranded DNA viruses: common patterns revealed by site-directed mutagenesis studies
    • Sanjuán R, 2010. Mutational fitness effects in RNA and single-stranded DNA viruses: common patterns revealed by site-directed mutagenesis studies. Philosophical Transactions of the Royal Society B 365, 1975-82.
    • (2010) Philosophical Transactions of the Royal Society B , vol.365 , pp. 1975-1982
    • Sanjuán, R.1
  • 37
    • 32544444570 scopus 로고    scopus 로고
    • The rank ordering of genotypic fitness values predicts genetic constraints on natural selection on landscapes lacking sign epistasis
    • Weinreich DM, 2005. The rank ordering of genotypic fitness values predicts genetic constraints on natural selection on landscapes lacking sign epistasis. Genetics 171, 1397-405.
    • (2005) Genetics , vol.171 , pp. 1397-1405
    • Weinreich, D.M.1
  • 39
    • 0030303565 scopus 로고    scopus 로고
    • The Red Queen beats the jack-of-all-trades: the limitations on the evolution of phenotypic plasticity and niche breadth
    • Whitlock MC, 1996. The Red Queen beats the jack-of-all-trades: the limitations on the evolution of phenotypic plasticity and niche breadth. American Naturalist 148, S65-77.
    • (1996) American Naturalist , vol.148
    • Whitlock, M.C.1
  • 42
    • 0036239186 scopus 로고    scopus 로고
    • Dependence of epistasis on environment and mutation severity as revealed by in silico mutagenesis of phage T7
    • You L, Yin J, 2002. Dependence of epistasis on environment and mutation severity as revealed by in silico mutagenesis of phage T7. Genetics 160, 1273-81.
    • (2002) Genetics , vol.160 , pp. 1273-1281
    • You, L.1    Yin, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.