Epistasis between mutations is host-dependent for an RNA virus

Biology Letters

Volumn 9, Issue 1, 2013, Pages

  Lalić, Jasna ^a   Elena, Santiago F ^a,b  

^a Ciudad Politécnica de la Innovación   (Spain)

^b SANTA FE INSTITUTE   (United States)

Author keywords

Deleterious mutations; Emerging viruses; Epistasis; Genotype by environment; Virus evolution

Indexed keywords

CORRELATION; EMERGENCE; EPISTASIS; GENOME; GENOTYPE-ENVIRONMENT INTERACTION; INFECTIOUS DISEASE; MUTATION; PROTEIN; RNA; VIRUS;

RNA VIRUSES;

ARTICLE; DATURA STRAMONIUM; EPISTASIS; GENETICS; GENOTYPE ENVIRONMENT INTERACTION; HOST PATHOGEN INTERACTION; PHYSIOLOGY; POTYVIRUS; REPRODUCTIVE FITNESS; SPECTROPHOTOMETRY; TOBACCO; VIROLOGY;

DATURA STRAMONIUM; EPISTASIS, GENETIC; GENE-ENVIRONMENT INTERACTION; GENETIC FITNESS; HOST-PATHOGEN INTERACTIONS; POTYVIRUS; SPECTROPHOTOMETRY; TOBACCO;

EID: 84872029541     PISSN: 17449561     EISSN: 1744957X     Source Type: Journal    
DOI: 10.1098/rsbl.2012.0396     Document Type: Article

References (17)

1. Holmes EC. 2009 The evolutionary genetics of emerging viruses. Annu. Rev. Ecol. Evol. Syst. 40, 353-372. (doi:10.1146/annurev.ecolsys.110308. 120248)
2. Holmes EC. 2003 Error threshold and the constraints to RNA virus evolution. Trends Microbiol. 11, 543-546. (doi:10.1016/j.tim.2003.10.006)
3. Holmes EC, Rambaut A. 2004 Viral evolution and the emergence of SARS coronavirus. Phil. Trans. R. Soc. Lond. B 359, 1059-1065. (doi:10. 1098/rstb.2004.1478)
4. Pepin KM, Wichman HA. 2007 Variable epistatic effects between mutations at host recognition sites in fX174 bacteriophage. Evolution 67, 1710-1724. (doi:10.1111/j.1558-5646.2007. 00143.x)
5. You L, Yin J. 2002 Dependence of epistasis on environment and mutation severity as revealed by in silico mutagenesis of phage T7. Genetics 160, 1273-1281.
6. Lalić J, Cuevas JM, Elena SF. 2011 Effect of host species on the distribution of mutational effects for an RNA virus. PLoS Genet. 7, e1002378. (doi:10.1371/journal.pgen.1002378)
7. Bedoya LC, Daròs JA. 2010 Stability of Tobacco etch virus infectious clones in plasmid vectors. Virus Res. 149, 234-240. (doi:10.1016/j.virusres.2010.02.004)
8. Lalić J, Elena SF. In press. Magnitude and sign epistasis among deleterious mutations in a positivesense plant RNA virus. Heredity. (doi:10.1038/hdy. 2012.15)
9. Agrawal AF, Withlock MC. 2010 Environmental duress and epistasis: how does stress affect the strength of selection on new mutations? Trends Ecol. Evol. 25, 450-458. (doi:10.1016/j.tree.2010.05.003)
10. Rico P, Ivars P, Elena SF, Hernández C. 2006 Insights into the selective pressures restricting Pelargonium flower break virus genome variability: evidence for host adaptation. J. Virol. 80, 8124-8132. (doi:10. 1128/JVI.00603-06)
11. Montarry J, Doumayrou J, Simon V, Moury B. 2011 Genetic background matters: a plant-virus genefor-gene interaction is strongly influenced by genetic contexts. Mol. Plant Pathol. 12, 911-920. (doi:10.1111/j.1364-3703.2011. 00724.x)
12. Carrasco P, de la Iglesia F, Elena SF. 2007 Distribution of fitness and virulence effects caused by single-nucleotide substitutions in Tobacco etch virus. J. Virol. 81, 12 979-12 984. (doi:10.1128/JVI. 00524-07)
13. Carrasco P, Daròs JA, Agudelo-Romero P, Elena SF. 2007 A real-time RT-PCR assay for quantifying the fitness of Tobacco etch virus in competition experiments. J. Virol. Meth. 139, 181-188. (doi:10.1016/j.jviromet.2006.09.020)
14. Soltis DE, Soltis PS. 2000 Contributions of plant molecular systematics to studies of molecular evolution. Plant Mol. Biol. 42, 45-75. (doi:10.1023/A:1006371803911)
15. Lalić J, Agudelo-Romero P, Carrasco P, Elena SF. 2010 Adaptation of Tobacco etch potyvirus to a susceptible ecotype of Arabidopsis thaliana capacitates it for systemic infection of resistant ecotypes. Phil. Trans. R. Soc. B 65, 1997-2008. (doi:10.1098/rstb.2010.0044)
16. Segrè D, DeLuna A, Church GM, Kishony R. 2005 Modular epistasis in yeast metabolism. Nat. Genet. 37, 77-83. (doi:10.1038/ng1489)
17. Poelwijk FJ, Tanase-Nicola S, Kiviet DJ, Tans SJ. 2011 Reciprocal sign epistasis is a necessary condition for multi-peaked fitness landscapes. J. Theor. Biol. 272, 141-144. (doi:10.1016/j.jtbi.2010.12.015)