-
1
-
-
0032489015
-
The cell as a collection of protein machines: Preparing the next generation of molecular biologists
-
DOI 10.1016/S0092-8674(00)80922-8
-
B. Alberts The cell as a collection of protein machines: preparing the next generation of molecular biologists Cell 92 1998 291 294 (Pubitemid 28093007)
-
(1998)
Cell
, vol.92
, Issue.3
, pp. 291-294
-
-
Alberts, B.1
-
2
-
-
0032969563
-
+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes
-
A.F. Neuwald, L. Aravind, J.L. Spouge, and E.V. Koonin AAA +: a class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes Genome Res. 9 1999 27 43 (Pubitemid 29095146)
-
(1999)
Genome Research
, vol.9
, Issue.1
, pp. 27-43
-
-
Neuwald, A.F.1
Aravind, L.2
Spouge, J.L.3
Koonin, E.V.4
-
3
-
-
0034046020
-
The SsrA-SmpB system for protein tagging, directed degradation and ribosome rescue
-
DOI 10.1038/75843
-
A.W. Karzai, E.D. Roche, and R.T. Sauer The SsrA-SmpB system for protein tagging, directed degradation and ribosome rescue Nat. Struct. Biol. 7 2000 449 455 (Pubitemid 30414463)
-
(2000)
Nature Structural Biology
, vol.7
, Issue.6
, pp. 449-455
-
-
Karzai, A.W.1
Roche, E.D.2
Sauer, R.T.3
-
4
-
-
0030444320
-
Proteases and their targets in Escherichia coli
-
DOI 10.1146/annurev.genet.30.1.465
-
S. Gottesman Proteases and their targets in Escherichia coli Annu. Rev. Genet. 30 1996 465 506 (Pubitemid 27014475)
-
(1996)
Annual Review of Genetics
, vol.30
, pp. 465-506
-
-
Gottesman, S.1
-
5
-
-
79959389010
-
AAA + proteases: ATP-fueled machines of protein destruction
-
R.T. Sauer, and T.A. Baker AAA + proteases: ATP-fueled machines of protein destruction Annu. Rev. Biochem. 80 2011 587 612
-
(2011)
Annu. Rev. Biochem.
, vol.80
, pp. 587-612
-
-
Sauer, R.T.1
Baker, T.A.2
-
6
-
-
0032514746
-
The role of the ClpA chaperone in proteolysis by ClpAP
-
DOI 10.1073/pnas.95.21.12135
-
J.R. Hoskins, M. Pak, M.R. Maurizi, and S. Wickner The role of the ClpA chaperone in proteolysis by ClpAP Proc. Natl. Acad. Sci. U. S. A. 95 1998 12135 12140 (Pubitemid 28483731)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.21
, pp. 12135-12140
-
-
Hoskins, J.R.1
Pak, M.2
Maurizi, M.R.3
Wickner, S.4
-
7
-
-
41149142931
-
Resolving individual steps in the operation of ATP-dependent proteolytic molecular machines: From conformational changes to substrate translocation and processivity
-
DOI 10.1021/bi800025g
-
S. Licht, and I. Lee Resolving individual steps in the operation of ATP-dependent proteolytic molecular machines: from conformational changes to substrate translocation and processivity Biochemistry 47 2008 3595 3605 (Pubitemid 351431348)
-
(2008)
Biochemistry
, vol.47
, Issue.12
, pp. 3595-3605
-
-
Licht, S.1
Lee, I.2
-
8
-
-
0028365133
-
Processive degradation of proteins by the ATP-dependent Clp protease from Escherichia coli. Requirement for the multiple array of active sites in ClpP but not ATP hydrolysis
-
M.W. Thompson, S.K. Singh, and M.R. Maurizi Processive degradation of proteins by the ATP-dependent Clp protease from Escherichia coli. Requirement for the multiple array of active sites in ClpP but not ATP hydrolysis J. Biol. Chem. 269 1994 18209 18215
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 18209-18215
-
-
Thompson, M.W.1
Singh, S.K.2
Maurizi, M.R.3
-
9
-
-
64049095981
-
Optimal efficiency of ClpAP and ClpXP chaperone-proteases is achieved by architectural symmetry
-
Z. Maglica, K. Kolygo, and E. Weber-Ban Optimal efficiency of ClpAP and ClpXP chaperone-proteases is achieved by architectural symmetry Structure 17 2009 508 516
-
(2009)
Structure
, vol.17
, pp. 508-516
-
-
Maglica, Z.1
Kolygo, K.2
Weber-Ban, E.3
-
10
-
-
0032568504
-
Molecular properties of ClpAP protease of Escherichia coli: ATP- dependent association of ClpA and ClpP
-
DOI 10.1021/bi973093e
-
M.R. Maurizi, S.K. Singh, M.W. Thompson, M. Kessel, and A. Ginsburg Molecular properties of ClpAP protease of Escherichia coli: ATP-dependent association of ClpA and clpP Biochemistry 37 1998 7778 7786 (Pubitemid 28248637)
-
(1998)
Biochemistry
, vol.37
, Issue.21
, pp. 7778-7786
-
-
Maurizi, M.R.1
Singh, S.K.2
Thompson, M.W.3
Kessel, M.4
Ginsburg, A.5
-
11
-
-
0035836749
-
Translocation pathway of protein substrates in ClpAP protease
-
DOI 10.1073/pnas.081543698
-
T. Ishikawa, F. Beuron, M. Kessel, S. Wickner, M.R. Maurizi, and A.C. Steven Translocation pathway of protein substrates in ClpAP protease Proc. Natl. Acad. Sci. U. S. A. 98 2001 4328 4333 (Pubitemid 32294976)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.8
, pp. 4328-4333
-
-
Ishikawa, T.1
Beuron, F.2
Kessel, M.3
Wickner, S.4
Maurizi, M.R.5
Steven, A.C.6
-
12
-
-
0028077782
-
Mutational analysis demonstrates different functional roles for the two ATP-binding sites in ClpAP protease from Escherichia coli
-
S.K. Singh, and M.R. Maurizi Mutational analysis demonstrates different functional roles for the two ATP-binding sites in ClpAP protease from Escherichia coli J. Biol. Chem. 269 1994 29537 29545 (Pubitemid 24365104)
-
(1994)
Journal of Biological Chemistry
, vol.269
, Issue.47
, pp. 29537-29545
-
-
Singh, S.K.1
Maurizi, M.R.2
-
13
-
-
71449115274
-
Both ATPase domains of ClpA are critical for processing of stable protein structures
-
W. Kress, H. Mutschler, and E. Weber-Ban Both ATPase domains of ClpA are critical for processing of stable protein structures J. Biol. Chem. 284 2009 31441 31452
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 31441-31452
-
-
Kress, W.1
Mutschler, H.2
Weber-Ban, E.3
-
14
-
-
0037195418
-
Crystal structure of C1pA, an Hsp100 chaperone and regulator of C1pAP protease
-
DOI 10.1074/jbc.M207796200
-
F. Guo, M.R. Maurizi, L. Esser, and D. Xia Crystal structure of ClpA, an Hsp100 chaperone and regulator of ClpAP protease J. Biol. Chem. 277 2002 46743 46752 (Pubitemid 35417677)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.48
, pp. 46743-46752
-
-
Guo, F.1
Maurizi, M.R.2
Esser, L.3
Xia, D.4
-
15
-
-
48149085922
-
Synchrotron protein footprinting supports substrate translocation by ClpA via ATP-induced movements of the D2 loop
-
J. Bohon, L.D. Jennings, C.M. Phillips, S. Licht, and M.R. Chance Synchrotron protein footprinting supports substrate translocation by ClpA via ATP-induced movements of the D2 loop Structure 16 2008 1157 1165
-
(2008)
Structure
, vol.16
, pp. 1157-1165
-
-
Bohon, J.1
Jennings, L.D.2
Phillips, C.M.3
Licht, S.4
Chance, M.R.5
-
16
-
-
21244480104
-
Loops in the central channel of ClpA chaperone mediate protein binding, unfolding, and translocation
-
DOI 10.1016/j.cell.2005.04.012, PII S0092867405003922
-
J. Hinnerwisch, W.A. Fenton, K.J. Furtak, G.W. Farr, and A.L. Horwich Loops in the central channel of ClpA chaperone mediate protein binding, unfolding, and translocation Cell 121 2005 1029 1041 (Pubitemid 40894633)
-
(2005)
Cell
, vol.121
, Issue.7
, pp. 1029-1041
-
-
Hinnerwisch, J.1
Fenton, W.A.2
Furtak, K.J.3
Farr, G.W.4
Horwich, A.L.5
-
17
-
-
0025870685
-
ATP-promoted interaction between Clp A and Clp P in activation of Clp protease from Escherichia coli
-
M.R. Maurizi ATP-promoted interaction between Clp A and Clp P in activation of Clp protease from Escherichia coli Biochem. Soc. Trans. 19 1991 719 723
-
(1991)
Biochem. Soc. Trans.
, vol.19
, pp. 719-723
-
-
Maurizi, M.R.1
-
18
-
-
0034255124
-
Protein binding and unfolding by the chaperone ClpA and degradation by the protease ClpAP
-
DOI 10.1073/pnas.97.16.8892
-
J.R. Hoskins, S.K. Singh, M.R. Maurizi, and S. Wickner Protein binding and unfolding by the chaperone ClpA and degradation by the protease ClpAP Proc. Natl. Acad. Sci. U. S. A. 97 2000 8892 8897 (Pubitemid 30626644)
-
(2000)
Proceedings of the National Academy of Sciences of the United States of America
, vol.97
, Issue.16
, pp. 8892-8897
-
-
Hoskins, J.R.1
Singh, S.K.2
Maurizi, M.R.3
Wickner, S.4
-
19
-
-
70349445398
-
Studying chaperone-proteases using a real-time approach based on FRET
-
K. Kolygo, N. Ranjan, W. Kress, F. Striebel, K. Hollenstein, K. Neelsen, M. Steiner, H. Summer, and E. Weber-Ban Studying chaperone-proteases using a real-time approach based on FRET J. Struct. Biol. 168 2009 267 277
-
(2009)
J. Struct. Biol.
, vol.168
, pp. 267-277
-
-
Kolygo, K.1
Ranjan, N.2
Kress, W.3
Striebel, F.4
Hollenstein, K.5
Neelsen, K.6
Steiner, M.7
Summer, H.8
Weber-Ban, E.9
-
20
-
-
34249734248
-
Assembly pathway of an AAA+ protein: Tracking ClpA and ClpAP complex formation in real time
-
DOI 10.1021/bi602616t
-
W. Kress, H. Mutschler, and E. Weber-Ban Assembly pathway of an AAA + protein: tracking ClpA and ClpAP complex formation in real time Biochemistry 46 2007 6183 6193 (Pubitemid 46842861)
-
(2007)
Biochemistry
, vol.46
, Issue.21
, pp. 6183-6193
-
-
Kress, W.1
Mutschler, H.2
Weber-Ban, E.3
-
21
-
-
0035957317
-
ClpA mediates directional translocation of substrate proteins into the ClpP protease
-
DOI 10.1073/pnas.071043698
-
B.G. Reid, W.A. Fenton, A.L. Horwich, and E.U. Weber-Ban ClpA mediates directional translocation of substrate proteins into the ClpP protease Proc. Natl. Acad. Sci. U. S. A. 98 2001 3768 3772 (Pubitemid 32249846)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.7
, pp. 3768-3772
-
-
Reid, B.G.1
Fenton, W.A.2
Horwic, A.L.3
Weber-Ban, E.U.4
-
22
-
-
79956099387
-
Activity of Escherichia coli ClpA bound by nucleoside di- and triphosphates
-
P.K. Veronese, B. Rajendar, and A.L. Lucius Activity of Escherichia coli ClpA bound by nucleoside di- and triphosphates J. Mol. Biol. 409 2011 333 347
-
(2011)
J. Mol. Biol.
, vol.409
, pp. 333-347
-
-
Veronese, P.K.1
Rajendar, B.2
Lucius, A.L.3
-
23
-
-
77953689102
-
Molecular mechanism of polypeptide translocation catalyzed by the Escherichia coli ClpA protein translocase
-
B. Rajendar, and A.L. Lucius Molecular mechanism of polypeptide translocation catalyzed by the Escherichia coli ClpA protein translocase J. Mol. Biol. 399 2010 665 679
-
(2010)
J. Mol. Biol.
, vol.399
, pp. 665-679
-
-
Rajendar, B.1
Lucius, A.L.2
-
24
-
-
78650955824
-
Application of the sequential n-step kinetic mechanism to polypeptide translocases
-
A.L. Lucius, J.M. Miller, and B. Rajendar Application of the sequential n-step kinetic mechanism to polypeptide translocases Methods Enzymol. 488 2011 239 264
-
(2011)
Methods Enzymol.
, vol.488
, pp. 239-264
-
-
Lucius, A.L.1
Miller, J.M.2
Rajendar, B.3
-
25
-
-
84879958575
-
E. Coli ClpA catalyzed polypeptide translocation is allosterically controlled by the protease ClpP
-
J.M. Miller, J. Lin, T. Li, and A.L. Lucius E. coli ClpA catalyzed polypeptide translocation is allosterically controlled by the protease ClpP J. Mol. Biol. 425 2013 2795 2812
-
(2013)
J. Mol. Biol.
, vol.425
, pp. 2795-2812
-
-
Miller, J.M.1
Lin, J.2
Li, T.3
Lucius, A.L.4
-
26
-
-
2542430217
-
Fluorescence stopped-flow studies of single turnover kinetics of E. Coli RecBCD helicase-catalyzed DNA unwinding
-
DOI 10.1016/j.jmb.2004.04.009, PII S0022283604004280
-
A.L. Lucius, C. Jason Wong, and T.M. Lohman Fluorescence stopped-flow studies of single turnover kinetics of E. coli RecBCD helicase-catalyzed DNA unwinding J. Mol. Biol. 339 2004 731 750 (Pubitemid 38686342)
-
(2004)
Journal of Molecular Biology
, vol.339
, Issue.4
, pp. 731-750
-
-
Lucius, A.L.1
Wong, C.J.2
Lohman, T.M.3
-
27
-
-
2542475076
-
Effects of temperature and ATP on the kinetic mechanism and kinetic step-size for E. Coli RecBCD helicase-catalyzed DNA unwinding
-
DOI 10.1016/j.jmb.2004.04.010, PII S0022283604004292
-
A.L. Lucius, and T.M. Lohman Effects of temperature and ATP on the kinetic mechanism and kinetic step-size for E. coli RecBCD helicase-catalyzed DNA unwinding J. Mol. Biol. 339 2004 751 771 (Pubitemid 38686343)
-
(2004)
Journal of Molecular Biology
, vol.339
, Issue.4
, pp. 751-771
-
-
Lucius, A.L.1
Lohman, T.M.2
-
28
-
-
9244237061
-
ATP-dependent translocation of proteins along single-stranded DNA: Models and methods of analysis of pre-steady state kinetics
-
DOI 10.1016/j.jmb.2004.10.004, PII S0022283604012859
-
C.J. Fischer, and T.M. Lohman ATP-dependent translocation of proteins along single-stranded DNA: models and methods of analysis of pre-steady state kinetics J. Mol. Biol. 344 2004 1265 1286 (Pubitemid 39550477)
-
(2004)
Journal of Molecular Biology
, vol.344
, Issue.5
, pp. 1265-1286
-
-
Fischer, C.J.1
Lohman, T.M.2
-
30
-
-
0028305742
-
Activity and specificity of Escherichia coli ClpAP protease in cleaving model peptide substrates
-
M.W. Thompson, and M.R. Maurizi Activity and specificity of Escherichia coli ClpAP protease in cleaving model peptide substrates J. Biol. Chem. 269 1994 18201 18208 (Pubitemid 24206221)
-
(1994)
Journal of Biological Chemistry
, vol.269
, Issue.27
, pp. 18201-18208
-
-
Thompson, M.W.1
Maurizi, M.R.2
-
31
-
-
33846941900
-
Asymmetric deceleration of ClpB or Hsp104 ATPase activity unleashes protein-remodeling activity
-
S.M. Doyle, J. Shorter, M. Zolkiewski, J.R. Hoskins, S. Lindquist, and S. Wickner Asymmetric deceleration of ClpB or Hsp104 ATPase activity unleashes protein-remodeling activity Nat. Struct. Mol. Biol. 14 2007 114 122
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 114-122
-
-
Doyle, S.M.1
Shorter, J.2
Zolkiewski, M.3
Hoskins, J.R.4
Lindquist, S.5
Wickner, S.6
-
32
-
-
0141865611
-
General methods for analysis of sequential "n-step" kinetic mechanisms: Application to single turnover kinetics of helicase-catalyzed DNA unwinding
-
A.L. Lucius, N.K. Maluf, C.J. Fischer, and T.M. Lohman General methods for analysis of sequential "n-step" kinetic mechanisms: application to single turnover kinetics of helicase-catalyzed DNA unwinding Biophys. J. 85 2003 2224 2239 (Pubitemid 37210774)
-
(2003)
Biophysical Journal
, vol.85
, Issue.4
, pp. 2224-2239
-
-
Lucius, A.L.1
Maluf, N.K.2
Fischer, C.J.3
Lohman, T.M.4
-
33
-
-
0036447339
-
DNA unwinding step-size of E. Coli RecBCD helicase determined from single turnover chemical quenched-flow kinetic studies
-
DOI 10.1016/S0022-2836(02)01067-7
-
A.L. Lucius, A. Vindigni, R. Gregorian, J.A. Ali, A.F. Taylor, G.R. Smith, and T.M. Lohman DNA unwinding step-size of E. coli RecBCD helicase determined from single turnover chemical quenched-flow kinetic studies J. Mol. Biol. 324 2002 409 428 (Pubitemid 35430509)
-
(2002)
Journal of Molecular Biology
, vol.324
, Issue.3
, pp. 409-428
-
-
Lucius, A.L.1
Vindigni, A.2
Gregorian, R.3
Ali, J.A.4
Taylor, A.F.5
Smith, G.R.6
Lohman, T.M.7
-
34
-
-
0034719392
-
The DExH protein NPH-II is a processive and directional motor for unwinding RNA
-
DOI 10.1038/35000239
-
E. Jankowsky, C.H. Gross, S. Shuman, and A.M. Pyle The DExH protein NPH-II is a processive and directional motor for unwinding RNA Nature 403 2000 447 451 (Pubitemid 30073096)
-
(2000)
Nature
, vol.403
, Issue.6768
, pp. 447-451
-
-
Jankowsky, E.1
Gross, C.H.2
Shuman, S.3
Pyle, A.M.4
-
35
-
-
0031031958
-
Kinetic measurement of the step size of DNA unwinding by Escherichia coli UvrD helicase
-
DOI 10.1126/science.275.5298.377
-
J.A. Ali, and T.M. Lohman Kinetic measurement of the step size of DNA unwinding by Escherichia coli UvrD helicase Science 275 1997 377 380 (Pubitemid 27051612)
-
(1997)
Science
, vol.275
, Issue.5298
, pp. 377-380
-
-
Ali, J.A.1
Lohman, T.M.2
-
36
-
-
4644261530
-
Unzipping mechanism of the double-stranded DNA unwinding by a hexameric helicase: Quantitative analysis of the rate of the dsDNA unwinding, processivity and kinetic step-size of the Escherichia coli DnaB helicase using rapid quench-flow method
-
DOI 10.1016/j.jmb.2004.07.055, PII S0022283604008836
-
R. Galletto, M.J. Jezewska, and W. Bujalowski Unzipping mechanism of the double-stranded DNA unwinding by a hexameric helicase: quantitative analysis of the rate of the dsDNA unwinding, processivity and kinetic step-size of the Escherichia coli DnaB helicase using rapid quench-flow method J. Mol. Biol. 343 2004 83 99 (Pubitemid 39277450)
-
(2004)
Journal of Molecular Biology
, vol.343
, Issue.1
, pp. 83-99
-
-
Galletto, R.1
Jezewska, M.J.2
Bujalowski, W.3
-
37
-
-
9244235535
-
Mechanism of ATP-dependent translocation of E. Coli UvrD monomers along single-stranded DNA
-
DOI 10.1016/j.jmb.2004.10.005, PII S0022283604012860
-
C.J. Fischer, N.K. Maluf, and T.M. Lohman Mechanism of ATP-dependent translocation of E. coli UvrD monomers along single-stranded DNA J. Mol. Biol. 344 2004 1287 1309 (Pubitemid 39550478)
-
(2004)
Journal of Molecular Biology
, vol.344
, Issue.5
, pp. 1287-1309
-
-
Fischer, C.J.1
Maluf, N.K.2
Lohman, T.M.3
-
38
-
-
84877259630
-
Monomeric PcrA helicase processively unwinds plasmid lengths of DNA in the presence of the initiator protein RepD
-
L.T. Chisty, C.P. Toseland, N. Fili, G.I. Mashanov, M.S. Dillingham, J.E. Molloy, and M.R. Webb Monomeric PcrA helicase processively unwinds plasmid lengths of DNA in the presence of the initiator protein RepD Nucleic Acids Res. 41 2013 5010 5023
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 5010-5023
-
-
Chisty, L.T.1
Toseland, C.P.2
Fili, N.3
Mashanov, G.I.4
Dillingham, M.S.5
Molloy, J.E.6
Webb, M.R.7
-
39
-
-
70350092797
-
The Escherichia coli ClpA molecular chaperone self-assembles into tetramers
-
P.K. Veronese, R.P. Stafford, and A.L. Lucius The Escherichia coli ClpA molecular chaperone self-assembles into tetramers Biochemistry 48 2009 9221 9233
-
(2009)
Biochemistry
, vol.48
, pp. 9221-9233
-
-
Veronese, P.K.1
Stafford, R.P.2
Lucius, A.L.3
|