-
1
-
-
31344467469
-
The asymmetry in the mature amino-terminus of ClpP facilitates a local symmetry match in ClpAP and ClpXP complexes
-
Bewley M.C., Graziano V., Griffin K., and Flanagan J.M. The asymmetry in the mature amino-terminus of ClpP facilitates a local symmetry match in ClpAP and ClpXP complexes. J. Struct. Biol. 153 (2006) 113-128
-
(2006)
J. Struct. Biol.
, vol.153
, pp. 113-128
-
-
Bewley, M.C.1
Graziano, V.2
Griffin, K.3
Flanagan, J.M.4
-
2
-
-
33646127577
-
Molecular chaperones and protein quality control
-
Bukau B., Weissman J., and Horwich A. Molecular chaperones and protein quality control. Cell 125 (2006) 443-451
-
(2006)
Cell
, vol.125
, pp. 443-451
-
-
Bukau, B.1
Weissman, J.2
Horwich, A.3
-
3
-
-
0037407940
-
Energy-dependent degradation: linkage between ClpX-catalyzed nucleotide hydrolysis and protein-substrate processing
-
Burton R.E., Baker T.A., and Sauer R.T. Energy-dependent degradation: linkage between ClpX-catalyzed nucleotide hydrolysis and protein-substrate processing. Protein Sci. 12 (2003) 893-902
-
(2003)
Protein Sci.
, vol.12
, pp. 893-902
-
-
Burton, R.E.1
Baker, T.A.2
Sauer, R.T.3
-
4
-
-
27144502022
-
Control of peptide product sizes by the energy-dependent protease ClpAP
-
Choi K.H., and Licht S. Control of peptide product sizes by the energy-dependent protease ClpAP. Biochemistry 44 (2005) 13921-13931
-
(2005)
Biochemistry
, vol.44
, pp. 13921-13931
-
-
Choi, K.H.1
Licht, S.2
-
5
-
-
41249085227
-
The flexible attachment of the N-domains to the ClpA ring body allows their use on demand
-
Cranz-Mileva S., Imkamp F., Kolygo K., Maglica Z., Kress W., and Weber-Ban E. The flexible attachment of the N-domains to the ClpA ring body allows their use on demand. J. Mol. Biol. 378 (2008) 412-424
-
(2008)
J. Mol. Biol.
, vol.378
, pp. 412-424
-
-
Cranz-Mileva, S.1
Imkamp, F.2
Kolygo, K.3
Maglica, Z.4
Kress, W.5
Weber-Ban, E.6
-
6
-
-
32544432878
-
ClpS is an essential component of the N-end rule pathway in Escherichia coli
-
Erbse A., Schmidt R., Bornemann T., Schneider-Mergener J., Mogk A., Zahn R., Dougan D.A., and Bukau B. ClpS is an essential component of the N-end rule pathway in Escherichia coli. Nature 439 (2006) 753-756
-
(2006)
Nature
, vol.439
, pp. 753-756
-
-
Erbse, A.1
Schmidt, R.2
Bornemann, T.3
Schneider-Mergener, J.4
Mogk, A.5
Zahn, R.6
Dougan, D.A.7
Bukau, B.8
-
7
-
-
25144452838
-
Cytoplasmic degradation of ssrA-tagged proteins
-
Farrell C.M., Grossman A.D., and Sauer R.T. Cytoplasmic degradation of ssrA-tagged proteins. Mol. Microbiol. 57 (2005) 1750-1761
-
(2005)
Mol. Microbiol.
, vol.57
, pp. 1750-1761
-
-
Farrell, C.M.1
Grossman, A.D.2
Sauer, R.T.3
-
8
-
-
0344824655
-
Proteolysis in bacterial regulatory circuits
-
Gottesman S. Proteolysis in bacterial regulatory circuits. Annu. Rev. Cell Dev. Biol. 19 (2003) 565-587
-
(2003)
Annu. Rev. Cell Dev. Biol.
, vol.19
, pp. 565-587
-
-
Gottesman, S.1
-
9
-
-
0025360846
-
The ATP-dependent Clp protease of Escherichia coli. Sequence of clpA and identification of a Clp-specific substrate
-
Gottesman S., Clark W.P., and Maurizi M.R. The ATP-dependent Clp protease of Escherichia coli. Sequence of clpA and identification of a Clp-specific substrate. J. Biol. Chem. 265 (1990) 7886-7893
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 7886-7893
-
-
Gottesman, S.1
Clark, W.P.2
Maurizi, M.R.3
-
10
-
-
0032079329
-
The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system
-
Gottesman S., Roche E., Zhou Y., and Sauer R.T. The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system. Genes Dev. 12 (1998) 1338-1347
-
(1998)
Genes Dev.
, vol.12
, pp. 1338-1347
-
-
Gottesman, S.1
Roche, E.2
Zhou, Y.3
Sauer, R.T.4
-
11
-
-
18144426344
-
The ClpP double ring tetradecameric protease exhibits plastic ring-ring interactions, and the N termini of its subunits form flexible loops that are essential for ClpXP and ClpAP complex formation
-
Gribun A., Kimber M.S., Ching R., Sprangers R., Fiebig K.M., and Houry W.A. The ClpP double ring tetradecameric protease exhibits plastic ring-ring interactions, and the N termini of its subunits form flexible loops that are essential for ClpXP and ClpAP complex formation. J. Biol. Chem. 280 (2005) 16185-16196
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 16185-16196
-
-
Gribun, A.1
Kimber, M.S.2
Ching, R.3
Sprangers, R.4
Fiebig, K.M.5
Houry, W.A.6
-
12
-
-
0032524297
-
Enzymatic and structural similarities between the Escherichia coli ATP-dependent proteases, ClpXP and ClpAP
-
Grimaud R., Kessel M., Beuron F., Steven A.C., and Maurizi M.R. Enzymatic and structural similarities between the Escherichia coli ATP-dependent proteases, ClpXP and ClpAP. J. Biol. Chem. 273 (1998) 12476-12481
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 12476-12481
-
-
Grimaud, R.1
Kessel, M.2
Beuron, F.3
Steven, A.C.4
Maurizi, M.R.5
-
13
-
-
28844501620
-
Roles of the N-domains of the ClpA unfoldase in binding substrate proteins and in stable complex formation with the ClpP protease
-
Hinnerwisch J., Reid B.G., Fenton W.A., and Horwich A.L. Roles of the N-domains of the ClpA unfoldase in binding substrate proteins and in stable complex formation with the ClpP protease. J. Biol. Chem. 280 (2005) 40838-40844
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 40838-40844
-
-
Hinnerwisch, J.1
Reid, B.G.2
Fenton, W.A.3
Horwich, A.L.4
-
14
-
-
3342972911
-
Two-substrate association with the 20S proteasome at single-molecule level
-
Hutschenreiter S., Tinazli A., Model K., and Tampe R. Two-substrate association with the 20S proteasome at single-molecule level. EMBO J. 23 (2004) 2488-2497
-
(2004)
EMBO J.
, vol.23
, pp. 2488-2497
-
-
Hutschenreiter, S.1
Tinazli, A.2
Model, K.3
Tampe, R.4
-
15
-
-
33846654174
-
Insights into the inter-ring plasticity of caseinolytic proteases from the X-ray structure of Mycobacterium tuberculosis ClpP1
-
Ingvarsson H., Mate M.J., Hogbom M., Portnoi D., Benaroudj N., Alzari P.M., Ortiz-Lombardia M., and Unge T. Insights into the inter-ring plasticity of caseinolytic proteases from the X-ray structure of Mycobacterium tuberculosis ClpP1. Acta Crystallogr. D Biol. Crystallogr. 63 (2007) 249-259
-
(2007)
Acta Crystallogr. D Biol. Crystallogr.
, vol.63
, pp. 249-259
-
-
Ingvarsson, H.1
Mate, M.J.2
Hogbom, M.3
Portnoi, D.4
Benaroudj, N.5
Alzari, P.M.6
Ortiz-Lombardia, M.7
Unge, T.8
-
16
-
-
0035836749
-
Translocation pathway of protein substrates in ClpAP protease
-
Ishikawa T., Beuron F., Kessel M., Wickner S., Maurizi M.R., and Steven A.C. Translocation pathway of protein substrates in ClpAP protease. Proc. Natl. Acad. Sci. USA 98 (2001) 4328-4333
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 4328-4333
-
-
Ishikawa, T.1
Beuron, F.2
Kessel, M.3
Wickner, S.4
Maurizi, M.R.5
Steven, A.C.6
-
17
-
-
54349084780
-
The ClpP N-terminus coordinates substrate access with protease active site reactivity
-
Jennings L.D., Bohon J., Chance M.R., and Licht S. The ClpP N-terminus coordinates substrate access with protease active site reactivity. Biochemistry 47 (2008) 11031-11040
-
(2008)
Biochemistry
, vol.47
, pp. 11031-11040
-
-
Jennings, L.D.1
Bohon, J.2
Chance, M.R.3
Licht, S.4
-
18
-
-
0023184358
-
A multiple-component, ATP-dependent protease from Escherichia coli
-
Katayama-Fujimura Y., Gottesman S., and Maurizi M.R. A multiple-component, ATP-dependent protease from Escherichia coli. J. Biol. Chem. 262 (1987) 4477-4485
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 4477-4485
-
-
Katayama-Fujimura, Y.1
Gottesman, S.2
Maurizi, M.R.3
-
19
-
-
0029126356
-
Homology in structural organization between E. coli ClpAP protease and the eukaryotic 26 S proteasome
-
Kessel M., Maurizi M.R., Kim B., Kocsis E., Trus B.L., Singh S.K., and Steven A.C. Homology in structural organization between E. coli ClpAP protease and the eukaryotic 26 S proteasome. J. Mol. Biol. 250 (1995) 587-594
-
(1995)
J. Mol. Biol.
, vol.250
, pp. 587-594
-
-
Kessel, M.1
Maurizi, M.R.2
Kim, B.3
Kocsis, E.4
Trus, B.L.5
Singh, S.K.6
Steven, A.C.7
-
20
-
-
0035122947
-
Molecular determinants of complex formation between Clp/Hsp100 ATPases and the ClpP peptidase
-
Kim Y.I., Levchenko I., Fraczkowska K., Woodruff R.V., Sauer R.T., and Baker T.A. Molecular determinants of complex formation between Clp/Hsp100 ATPases and the ClpP peptidase. Nat. Struct. Biol. 8 (2001) 230-233
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 230-233
-
-
Kim, Y.I.1
Levchenko, I.2
Fraczkowska, K.3
Woodruff, R.V.4
Sauer, R.T.5
Baker, T.A.6
-
21
-
-
34249734248
-
Assembly pathway of an AAA+ protein: tracking ClpA and ClpAP complex formation in real time
-
Kress W., Mutschler H., and Weber-Ban E. Assembly pathway of an AAA+ protein: tracking ClpA and ClpAP complex formation in real time. Biochemistry 46 (2007) 6183-6193
-
(2007)
Biochemistry
, vol.46
, pp. 6183-6193
-
-
Kress, W.1
Mutschler, H.2
Weber-Ban, E.3
-
22
-
-
54849425578
-
An intrinsic degradation tag on the ClpA C-terminus regulates the balance of ClpAP complexes with different substrate specificity
-
Maglica Z., Striebel F., and Weber-Ban E. An intrinsic degradation tag on the ClpA C-terminus regulates the balance of ClpAP complexes with different substrate specificity. J. Mol. Biol. 384 (2008) 503-511
-
(2008)
J. Mol. Biol.
, vol.384
, pp. 503-511
-
-
Maglica, Z.1
Striebel, F.2
Weber-Ban, E.3
-
23
-
-
34250850205
-
Distinct static and dynamic interactions control ATPase-peptidase communication in a AAA+ protease
-
Martin A., Baker T.A., and Sauer R.T. Distinct static and dynamic interactions control ATPase-peptidase communication in a AAA+ protease. Mol. Cell 27 (2007) 41-52
-
(2007)
Mol. Cell
, vol.27
, pp. 41-52
-
-
Martin, A.1
Baker, T.A.2
Sauer, R.T.3
-
24
-
-
0025870685
-
ATP-promoted interaction between Clp A and Clp P in activation of Clp protease from Escherichia coli
-
Maurizi M.R. ATP-promoted interaction between Clp A and Clp P in activation of Clp protease from Escherichia coli. Biochem. Soc. Trans. 19 (1991) 719-723
-
(1991)
Biochem. Soc. Trans.
, vol.19
, pp. 719-723
-
-
Maurizi, M.R.1
-
25
-
-
0032568504
-
Molecular properties of ClpAP protease of Escherichia coli: ATP-dependent association of ClpA and ClpP
-
Maurizi M.R., Singh S.K., Thompson M.W., Kessel M., and Ginsburg A. Molecular properties of ClpAP protease of Escherichia coli: ATP-dependent association of ClpA and ClpP. Biochemistry 37 (1998) 7778-7786
-
(1998)
Biochemistry
, vol.37
, pp. 7778-7786
-
-
Maurizi, M.R.1
Singh, S.K.2
Thompson, M.W.3
Kessel, M.4
Ginsburg, A.5
-
26
-
-
33947713897
-
The N-end rule pathway for regulated proteolysis: prokaryotic and eukaryotic strategies
-
Mogk A., Schmidt R., and Bukau B. The N-end rule pathway for regulated proteolysis: prokaryotic and eukaryotic strategies. Trends Cell Biol. 17 (2007) 165-172
-
(2007)
Trends Cell Biol.
, vol.17
, pp. 165-172
-
-
Mogk, A.1
Schmidt, R.2
Bukau, B.3
-
27
-
-
0034502532
-
Visualization of substrate binding and translocation by the ATP-dependent protease, ClpXP
-
Ortega J., Singh S.K., Ishikawa T., Maurizi M.R., and Steven A.C. Visualization of substrate binding and translocation by the ATP-dependent protease, ClpXP. Mol. Cell 6 (2000) 1515-1521
-
(2000)
Mol. Cell
, vol.6
, pp. 1515-1521
-
-
Ortega, J.1
Singh, S.K.2
Ishikawa, T.3
Maurizi, M.R.4
Steven, A.C.5
-
28
-
-
0037119954
-
Alternating translocation of protein substrates from both ends of ClpXP protease
-
Ortega J., Lee H.S., Maurizi M.R., and Steven A.C. Alternating translocation of protein substrates from both ends of ClpXP protease. EMBO J. 21 (2002) 4938-4949
-
(2002)
EMBO J.
, vol.21
, pp. 4938-4949
-
-
Ortega, J.1
Lee, H.S.2
Maurizi, M.R.3
Steven, A.C.4
-
29
-
-
16844376945
-
The molecular chaperone, ClpA, has a single high affinity peptide binding site per hexamer
-
Piszczek G., Rozycki J., Singh S.K., Ginsburg A., and Maurizi M.R. The molecular chaperone, ClpA, has a single high affinity peptide binding site per hexamer. J. Biol. Chem. 280 (2005) 12221-12230
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 12221-12230
-
-
Piszczek, G.1
Rozycki, J.2
Singh, S.K.3
Ginsburg, A.4
Maurizi, M.R.5
-
30
-
-
0035957317
-
ClpA mediates directional translocation of substrate proteins into the ClpP protease
-
Reid B.G., Fenton W.A., Horwich A.L., and Weber-Ban E.U. ClpA mediates directional translocation of substrate proteins into the ClpP protease. Proc. Natl. Acad. Sci. USA 98 (2001) 3768-3772
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 3768-3772
-
-
Reid, B.G.1
Fenton, W.A.2
Horwich, A.L.3
Weber-Ban, E.U.4
-
31
-
-
0031106816
-
A continuous spectrophotometric assay for aspartate transcarbamylase and ATPases
-
Rieger C.E., Lee J., and Turnbull J.L. A continuous spectrophotometric assay for aspartate transcarbamylase and ATPases. Anal. Biochem. 246 (1997) 86-95
-
(1997)
Anal. Biochem.
, vol.246
, pp. 86-95
-
-
Rieger, C.E.1
Lee, J.2
Turnbull, J.L.3
-
32
-
-
33646910002
-
20S proteasomes have the potential to keep substrates in store for continual degradation
-
Sharon M., Witt S., Felderer K., Rockel B., Baumeister W., and Robinson C.V. 20S proteasomes have the potential to keep substrates in store for continual degradation. J. Biol. Chem. 281 (2006) 9569-9575
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 9569-9575
-
-
Sharon, M.1
Witt, S.2
Felderer, K.3
Rockel, B.4
Baumeister, W.5
Robinson, C.V.6
-
33
-
-
28044440088
-
Quantitative NMR spectroscopy of supramolecular complexes: dynamic side pores in ClpP are important for product release
-
Sprangers R., Gribun A., Hwang P.M., Houry W.A., and Kay L.E. Quantitative NMR spectroscopy of supramolecular complexes: dynamic side pores in ClpP are important for product release. Proc. Natl. Acad. Sci. USA 102 (2005) 16678-16683
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 16678-16683
-
-
Sprangers, R.1
Gribun, A.2
Hwang, P.M.3
Houry, W.A.4
Kay, L.E.5
-
34
-
-
0030691115
-
The structure of ClpP at 2.3 Å resolution suggests a model for ATP-dependent proteolysis
-
Wang J., Hartling J.A., and Flanagan J.M. The structure of ClpP at 2.3 Å resolution suggests a model for ATP-dependent proteolysis. Cell 91 (1997) 447-456
-
(1997)
Cell
, vol.91
, pp. 447-456
-
-
Wang, J.1
Hartling, J.A.2
Flanagan, J.M.3
-
35
-
-
0033517351
-
Global unfolding of a substrate protein by the Hsp100 chaperone ClpA
-
Weber-Ban E.U., Reid B.G., Miranker A.D., and Horwich A.L. Global unfolding of a substrate protein by the Hsp100 chaperone ClpA. Nature 401 (1999) 90-93
-
(1999)
Nature
, vol.401
, pp. 90-93
-
-
Weber-Ban, E.U.1
Reid, B.G.2
Miranker, A.D.3
Horwich, A.L.4
-
36
-
-
0033520987
-
Posttranslational quality control: folding, refolding, and degrading proteins
-
Wickner S., Maurizi M.R., and Gottesman S. Posttranslational quality control: folding, refolding, and degrading proteins. Science 286 (1999) 1888-1893
-
(1999)
Science
, vol.286
, pp. 1888-1893
-
-
Wickner, S.1
Maurizi, M.R.2
Gottesman, S.3
-
37
-
-
34447511284
-
ClpP: a distinctive family of cylindrical energy-dependent serine proteases
-
Yu A.Y., and Houry W.A. ClpP: a distinctive family of cylindrical energy-dependent serine proteases. FEBS Lett. 581 (2007) 3749-3757
-
(2007)
FEBS Lett.
, vol.581
, pp. 3749-3757
-
-
Yu, A.Y.1
Houry, W.A.2
|