메뉴 건너뛰기




Volumn 30, Issue 12, 2013, Pages 2579-2587

MtDNA lineage expansions in sherpa population suggest adaptive evolution in Tibetan Highlands

Author keywords

adaptive evolution; hypoxia adaption; mitochondrial DNA

Indexed keywords

MITOCHONDRIAL DNA;

EID: 84890351930     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/mst147     Document Type: Article
Times cited : (53)

References (49)
  • 1
    • 38949133420 scopus 로고    scopus 로고
    • MtDNA variation predicts population size in humans and reveals a major southern Asian chapter in human prehistory
    • Atkinson QD, Gray RD, Drummond AJ. 2008. mtDNA variation predicts population size in humans and reveals a major southern Asian chapter in human prehistory. Mol Biol Evol. 25:468-474.
    • (2008) Mol Biol Evol , vol.25 , pp. 468-474
    • Atkinson, Q.D.1    Gray, R.D.2    Drummond, A.J.3
  • 2
    • 30344482922 scopus 로고    scopus 로고
    • The population biology of mitochondrial DNA and its phylogenetic implications
    • Ballard JWO, Rand DM. 2005. The population biology of mitochondrial DNA and its phylogenetic implications. Annu Rev Ecol Evol Syst. 36: 621-642.
    • (2005) Annu Rev Ecol Evol Syst , vol.36 , pp. 621-642
    • Ballard, J.W.O.1    Rand, D.M.2
  • 3
    • 0032900678 scopus 로고    scopus 로고
    • Median-joining networks for inferring intraspecific phylogenies
    • Bandelt HJ, Forster P, Rohl A. 1999. Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol. 16:37-48.
    • (1999) Mol Biol Evol , vol.16 , pp. 37-48
    • Bandelt, H.J.1    Forster, P.2    Rohl, A.3
  • 5
    • 77954926596 scopus 로고    scopus 로고
    • Natural selection on EPAS1 (HIF2-) associated with low hemoglobin concentration in Tibetan highlanders
    • (29 co-authors)
    • Beall CM, Cavalleri GL, Deng L, et al. (29 co-authors). 2010. Natural selection on EPAS1 (HIF2-) associated with low hemoglobin concentration in Tibetan highlanders. Proc Natl Acad Sci USA. 107:11459-11464.
    • (2010) Proc Natl Acad Sci USA. , vol.107 , pp. 11459-11464
    • Beall, C.M.1    Cavalleri, G.L.2    Deng, L.3
  • 7
    • 0026531040 scopus 로고
    • Mitochondrial DNA complex i and III mutations associated with Leber's hereditary optic neuropathy
    • Brown MD, Voljavec AS, Lott MT, Torroni A, Yang CC, Wallace DC. 1992. Mitochondrial DNA complex I and III mutations associated with Leber's hereditary optic neuropathy. Genetics 130:163-173.
    • (1992) Genetics , vol.130 , pp. 163-173
    • Brown, M.D.1    Voljavec, A.S.2    Lott, M.T.3    Torroni, A.4    Yang, C.C.5    Wallace, D.C.6
  • 8
    • 56149096455 scopus 로고    scopus 로고
    • Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology
    • Cronn R, Liston A, Parks M, Gernandt DS, Shen R, Mockler T. 2008. Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology. Nucleic Acids Res. 36:e122.
    • (2008) Nucleic Acids Res , vol.36
    • Cronn, R.1    Liston, A.2    Parks, M.3    Gernandt, D.S.4    Shen, R.5    Mockler, T.6
  • 9
    • 84855357940 scopus 로고    scopus 로고
    • Mid-Holocene climate change and its effect on prehistoric cultural evolution in eastern Qinghai Province, China
    • Dong G, Jia X, An C, Chen F, Zhao Y, Tao S, Ma M. 2012. Mid-Holocene climate change and its effect on prehistoric cultural evolution in eastern Qinghai Province, China. Quaternary Res. 77:23-30.
    • (2012) Quaternary Res. , vol.77 , pp. 23-30
    • Dong, G.1    Jia, X.2    An, C.3    Chen, F.4    Zhao, Y.5    Tao, S.6    Ma, M.7
  • 10
    • 33846493086 scopus 로고    scopus 로고
    • Genetic contribution of the endothelial nitric oxide synthase gene to high altitude adaptation in sherpas
    • (12 co-authors)
    • Droma Y, Hanaoka M, Basnyat B, et al. (12 co-authors). 2006. Genetic contribution of the endothelial nitric oxide synthase gene to high altitude adaptation in sherpas. High Alt Med Biol. 7:209-220.
    • (2006) High Alt Med Biol , vol.7 , pp. 209-220
    • Droma, Y.1    Hanaoka, M.2    Basnyat, B.3
  • 11
    • 41149121726 scopus 로고    scopus 로고
    • Adaptation to high altitude in Sherpas: Association with the insertion/deletion polymorphism in the Angiotensin-converting enzyme gene
    • (12 co-authors)
    • Droma Y, Hanaoka M, Basnyat B, et al. (12 co-authors). 2008. Adaptation to high altitude in Sherpas: association with the insertion/deletion polymorphism in the Angiotensin-converting enzyme gene. Wilderness Environ Med. 19:22-29.
    • (2008) Wilderness Environ Med , vol.19 , pp. 22-29
    • Droma, Y.1    Hanaoka, M.2    Basnyat, B.3
  • 12
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond AJ, Rambaut A. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol. 7:214.
    • (2007) BMC Evol Biol , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 13
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 14
    • 85007110786 scopus 로고    scopus 로고
    • Arlequin (version 3.0): An integrated software package for population genetics data analysis
    • Excoffier L, Laval G, Schneider S. 2005. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol Bioinform. 1:47-50
    • (2005) Evol Bioinform , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 15
    • 34748886657 scopus 로고    scopus 로고
    • PAST: Paleontological statistics software package for education and data analysis
    • Hammer O, Harper DAT, Ryan PD. 2001. PAST: paleontological statistics software package for education and data analysis. Palaeontol Electron. 4:9.
    • (2001) Palaeontol Electron , vol.4 , pp. 9
    • Hammer, O.1    Harper, D.A.T.2    Ryan, P.D.3
  • 17
    • 31444442779 scopus 로고    scopus 로고
    • Molecular clocks: When timesare a-changin
    • Ho SYW, Larson G. 2006. Molecular clocks: when timesare a-changin'. Trends Genet. 22:79-83.
    • (2006) Trends Genet , vol.22 , pp. 79-83
    • Syw, H.1    Larson, G.2
  • 18
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a Wright-Fisher neutral model of genetic variation
    • Hudson RR. 2002. Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 18:337-338.
    • (2002) Bioinformatics , vol.18 , pp. 337-338
    • Hudson, R.R.1
  • 19
    • 84860806864 scopus 로고    scopus 로고
    • Mitochondrial DNA variant associated with Leber hereditary optic neuropathy and high-altitude Tibetans
    • (21 co-authors)
    • Ji F, Sharpley MS, Derbeneva O, et al. (21 co-authors). 2012. Mitochondrial DNA variant associated with Leber hereditary optic neuropathy and high-altitude Tibetans. Proc Natl Acad Sci USA. 109:7391-7396.
    • (2012) Proc Natl Acad Sci USA. , vol.109 , pp. 7391-7396
    • Ji, F.1    Sharpley, M.S.2    Derbeneva, O.3
  • 20
    • 0026036025 scopus 로고
    • Alternative, simultaneous complex i mitochondrial DNA mutations in Leber's hereditary optic neuropathy
    • Johns DR, Berman J. 1991. Alternative, simultaneous complex I mitochondrial DNA mutations in Leber's hereditary optic neuropathy. Biochem Biophys Res Commun. 174:1324-1330.
    • (1991) Biochem Biophys Res Commun , vol.174 , pp. 1324-1330
    • Johns, D.R.1    Berman, J.2
  • 21
    • 33745275886 scopus 로고    scopus 로고
    • Updating the East AsianmtDNA phylogeny: A prerequisite for the identification of pathogenic mutations
    • (12 co-authors)
    • Kong QP, Bandelt HJ, Sun C, et al. (12 co-authors). 2006. Updating the East AsianmtDNA phylogeny: a prerequisite for the identification of pathogenic mutations. Hum Mol Genet. 15:2076-2086.
    • (2006) Hum Mol Genet , vol.15 , pp. 2076-2086
    • Kong, Q.P.1    Bandelt, H.J.2    Sun, C.3
  • 22
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
    • Krogh A, Larsson B, von Heijne G, Sonnhammer EL. 2001. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol. 305:567-580.
    • (2001) J Mol Biol , vol.305 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    Von Heijne, G.3    Sonnhammer, E.L.4
  • 23
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 26
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    • (11 co-authors)
    • McKenna A, Hanna M, Banks E, et al. (11 co-authors). 2010. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20: 1297-1303.
    • (2010) Genome Res. , vol.20 , pp. 1297-1303
    • McKenna, A.1    Hanna, M.2    Banks, E.3
  • 28
    • 78650985826 scopus 로고    scopus 로고
    • Inland post-glacial dispersal in East Asia revealed by mitochondrial haplogroup M9a'b
    • (18 co-authors)
    • Peng MS, Palanichamy MG, Yao YG, et al. (18 co-authors). 2011. Inland post-glacial dispersal in East Asia revealed by mitochondrial haplogroup M9a'b. BMC Biol. 9:2.
    • (2011) BMC Biol. , vol.9 , pp. 2
    • Peng, M.S.1    Palanichamy, M.G.2    Yao, Y.G.3
  • 29
    • 78751545966 scopus 로고    scopus 로고
    • Genetic variations in Tibetan populations and high-altitude adaptation at the Himalayas
    • (15 co-authors)
    • Peng Y, Yang Z, Zhang H, et al. (15 co-authors). 2011. Genetic variations in Tibetan populations and high-altitude adaptation at the Himalayas. Mol Biol Evol. 28:1075-1081.
    • (2011) Mol Biol Evol. , vol.28 , pp. 1075-1081
    • Peng, Y.1    Yang, Z.2    Zhang, H.3
  • 30
    • 79953706954 scopus 로고    scopus 로고
    • Comparing phylogeny and the predicted pathogenicity of protein variations reveals equal purifying selection across the global human mtDNA diversity
    • Pereira L, Soares P, Radivojac P, Li B, Samuels DC. 2011. Comparing phylogeny and the predicted pathogenicity of protein variations reveals equal purifying selection across the global human mtDNA diversity. Am J Hum Genet. 88:433-439.
    • Am J Hum Genet. , vol.2011 , Issue.88 , pp. 433-439
    • Pereira, L.1    Soares, P.2    Radivojac, P.3    Li, B.4    Samuels, D.C.5
  • 31
    • 84890362810 scopus 로고    scopus 로고
    • Genetic evidence of Paleolithic colonization and Neolithic expansion of modern humans on the Tibetan Plateau
    • (19 co-authors)
    • Qi X, Cui C, Peng Y, et al. (19 co-authors). 2013. Genetic evidence of Paleolithic colonization and Neolithic expansion of modern humans on the Tibetan Plateau. Mol Biol Evol. 30:1761-1778.
    • (2013) Mol Biol Evol. , vol.30 , pp. 1761-1778
    • Qi, X.1    Cui, C.2    Peng, Y.3
  • 32
    • 84871554525 scopus 로고    scopus 로고
    • Investigation into Sherpas's history and their present situation
    • Qie P, Sang D. 2006. Investigation into Sherpas's history and their present situation. North West Ethno-national Studies. 48:64-74.
    • (2006) North West Ethno-national Studies , vol.48 , pp. 64-74
    • Qie, P.1    Sang, D.2
  • 33
    • 78649651559 scopus 로고    scopus 로고
    • A mitochondrial revelation of early human migrations to the Tibetan Plateau before and after the last glacial maximum
    • (14 co-authors)
    • Qin ZD, Yang YJ, Kang LL, et al. (14 co-authors). 2010. A mitochondrial revelation of early human migrations to the Tibetan Plateau before and after the last glacial maximum. Am J Phys Anthropol. 143: 555-569.
    • (2010) Am J Phys Anthropol. , vol.143 , pp. 555-569
    • Qin, Z.D.1    Yang, Y.J.2    Kang, L.L.3
  • 34
    • 0030928378 scopus 로고    scopus 로고
    • Seq-Gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
    • Rambaut A, Grassly NC. 1997. Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Comput Appl Biosci. 13:235-238.
    • (1997) Comput Appl Biosci , vol.13 , pp. 235-238
    • Rambaut, A.1    Grassly, N.C.2
  • 36
    • 0347356538 scopus 로고    scopus 로고
    • Effects of purifying and adaptive selection on regional variation in human mtDNA
    • Ruiz-Pesini E, Mishmar D, Brandon M, Procaccio V, Wallace DC. 2004. Effects of purifying and adaptive selection on regional variation in human mtDNA. Science 303:223-226.
    • (2004) Science , vol.303 , pp. 223-226
    • Ruiz-Pesini, E.1    Mishmar, D.2    Brandon, M.3    Procaccio, V.4    Wallace, D.C.5
  • 37
    • 0033842913 scopus 로고    scopus 로고
    • MtDNA variation among Greenland Eskimos: The edge of the Beringian expansion
    • Saillard J, Forster P, Lynnerup N, Bandelt HJ, Norby S. 2000. mtDNA variation among Greenland Eskimos: the edge of the Beringian expansion. Am J Hum Genet. 67:718-726.
    • (2000) Am J Hum Genet , vol.67 , pp. 718-726
    • Saillard, J.1    Forster, P.2    Lynnerup, N.3    Bandelt, H.J.4    Norby, S.5
  • 38
    • 77954319663 scopus 로고    scopus 로고
    • Genetic evidence for high-altitude adaptation in Tibet
    • (12 co-authors)
    • Simonson TS, Yang Y, Huff CD, et al. (12 co-authors). 2010. Genetic evidence for high-altitude adaptation in Tibet. Science 329:72-75.
    • (2010) Science , vol.329 , pp. 72-75
    • Simonson, T.S.1    Yang, Y.2    Huff, C.D.3
  • 41
    • 64049089255 scopus 로고    scopus 로고
    • Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation
    • van Oven M, Kayser M. 2009. Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Hum Mutat. 30:E386-E394.
    • (2009) Hum Mutat , vol.30
    • Van Oven, M.1    Kayser, M.2
  • 43
    • 78751489036 scopus 로고    scopus 로고
    • A genome-wide search for signals of high-altitude adaptation in Tibetans
    • (13 co-authors)
    • Xu S, Li S, Yang Y, et al. (13 co-authors). 2011. A genome-wide search for signals of high-altitude adaptation in Tibetans. Mol Biol Evol. 28: 1003-1011.
    • (2011) Mol Biol Evol. , vol.28 , pp. 1003-1011
    • Xu, S.1    Li, S.2    Yang, Y.3
  • 44
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • Yang ZH. 2007. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol. 24:1586-1591.
    • (2007) Mol Biol Evol , vol.24 , pp. 1586-1591
    • Zh, Y.1
  • 45
    • 77954319020 scopus 로고    scopus 로고
    • Sequencing of 50 human exomes reveals adaptation to high altitude
    • (70 co-authors)
    • Yi X, Liang Y, Huerta-Sanchez E, et al. (70 co-authors). 2010. Sequencing of 50 human exomes reveals adaptation to high altitude. Science 329:75-78.
    • (2010) Science , vol.329 , pp. 75-78
    • Yi, X.1    Liang, Y.2    Huerta-Sanchez, E.3
  • 46
    • 84890374215 scopus 로고    scopus 로고
    • Study on the early relation between nepal and china's tibet
    • Zhao P. 2010. Study on the Early Relation between Nepal and China's Tibet. Tibetan Studies 21:24-30.
    • (2010) Tibetan Studies , vol.21 , pp. 24-30
    • Zhao, P.1
  • 47
    • 75849116319 scopus 로고    scopus 로고
    • Mitochondrial genome evidence reveals successful Late Paleolithic settlement on the Tibetan Plateau
    • (16 co-authors)
    • Zhao M, Kong QP, Wang HW, et al. (16 co-authors). 2009. Mitochondrial genome evidence reveals successful Late Paleolithic settlement on the Tibetan Plateau. Proc Natl Acad Sci USA. 106: 21230-21235.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 21230-21235
    • Zhao, M.1    Kong, Q.P.2    Wang, H.W.3
  • 48
    • 80053588203 scopus 로고    scopus 로고
    • Major population expansion of East Asians began before neolithic time: Evidence of mtDNA genomes
    • Zheng HX, Yan S, Qin ZD, Wang Y, Tan JZ, Li H, Jin L. 2011. Major population expansion of East Asians began before neolithic time: evidence of mtDNA genomes. PLoS One 6:e25835.
    • (2011) PLoS One , vol.6
    • Zheng, H.X.1    Yan, S.2    Qin, Z.D.3    Wang, Y.4    Tan, J.Z.5    Li, H.6    Jin, L.7
  • 49
    • 84868270993 scopus 로고    scopus 로고
    • MtDNA analysis of global populations support that major population expansions began before Neolithic Time
    • Zheng HX, Yan S, Qin ZD, Jin L. 2012. MtDNA analysis of global populations support that major population expansions began before Neolithic Time. Sci Rep. 2:745.
    • (2012) Sci Rep. , vol.2 , pp. 745
    • Zheng, H.X.1    Yan, S.2    Qin, Z.D.3    Jin, L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.