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Volumn 57, Issue 3, 2013, Pages 251-262

Specific labeling and assignment strategies of valine methyl groups for NMR studies of high molecular weight proteins

Author keywords

Acetolactate; Large proteins; Methyl groups; NOE; Stereospecific labeling; Valine

Indexed keywords

2 ACETOLACTATE; 2 OXOISOVALERIC ACID; HIGH MOLECULAR WEIGHT PROTEIN; LACTIC ACID DERIVATIVE; LEUCINE; METHYL GROUP; PEPTIDASE; PROTEIN; UNCLASSIFIED DRUG; VALINE;

EID: 84890111683     PISSN: 09252738     EISSN: 15735001     Source Type: Journal    
DOI: 10.1007/s10858-013-9785-z     Document Type: Article
Times cited : (55)

References (35)
  • 3
    • 58149463865 scopus 로고    scopus 로고
    • An efficient protocol for the complete incorporation of methyl-protonated alanine in perdeuterated protein
    • 10.1007/s10858-008-9294-7
    • Ayala I, Sounier R, Usé N, Gans P, Boisbouvier J (2009) An efficient protocol for the complete incorporation of methyl-protonated alanine in perdeuterated protein. J Biomol NMR 43:111-119
    • (2009) J Biomol NMR , vol.43 , pp. 111-119
    • Ayala, I.1    Sounier, R.2    Usé, N.3    Gans, P.4    Boisbouvier, J.5
  • 5
    • 13844255627 scopus 로고    scopus 로고
    • Crystal structure of TET protease reveals complementary protein degradation pathways in prokaryotes
    • 10.1016/j.jmb.2004.12.056
    • Borissenko L, Groll M (2005) Crystal structure of TET protease reveals complementary protein degradation pathways in prokaryotes. J Mol Biol 346:1207-1219
    • (2005) J Mol Biol , vol.346 , pp. 1207-1219
    • Borissenko, L.1    Groll, M.2
  • 6
    • 22244449030 scopus 로고    scopus 로고
    • Slow-onset feedback inhibition: α inhibition of mycobacterium tuberculosis α-isopropylmalate synthase by l-leucine
    • 10.1021/ja052513h
    • De Carvalho LPS, Argyrou A, Blanchard JS (2005) Slow-onset feedback inhibition: α inhibition of mycobacterium tuberculosis α-isopropylmalate synthase by l-leucine. J Am Chem Soc 127:10004-10005
    • (2005) J Am Chem Soc , vol.127 , pp. 10004-10005
    • De Carvalho, L.P.S.1    Argyrou, A.2    Blanchard, J.S.3
  • 7
    • 0029400480 scopus 로고
    • NMRPipe: A multidimensional spectral processing system based on UNIX pipes
    • 10.1007/BF00197809
    • Delaglio F, Grzesiek S, Vuister GW, Zhu G, Pfeifer J, Bax A (1995) NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J Biomol NMR 6:277-293
    • (1995) J Biomol NMR , vol.6 , pp. 277-293
    • Delaglio, F.1    Grzesiek, S.2    Vuister, G.W.3    Zhu, G.4    Pfeifer, J.5    Bax, A.6
  • 8
    • 34249023900 scopus 로고    scopus 로고
    • 13C methyl group labeled methionine precursor as a useful tool for simplifying protein structural analysis by NMR spectroscopy
    • 13C methyl group labeled methionine precursor as a useful tool for simplifying protein structural analysis by NMR spectroscopy. Chem Biochem 8:610-612
    • (2007) Chem Biochem , vol.8 , pp. 610-612
    • Fischer, M.1    Kloiber, K.2    Häusler, J.3    Ledolter, K.4    Konrat, R.5    Schmid, W.6
  • 10
    • 0030824756 scopus 로고    scopus 로고
    • 1 methyl) isoleucine into proteins for multidimensional NMR studies
    • 10.1021/ja9706514
    • 1 methyl) isoleucine into proteins for multidimensional NMR studies. J Am Chem Soc 119:7599-7600
    • (1997) J Am Chem Soc , vol.119 , pp. 7599-7600
    • Gardner, K.H.1    Kay, L.E.2
  • 11
  • 12
    • 78650588910 scopus 로고    scopus 로고
    • Alanine methyl groups as NMR probes of molecular structure and dynamics in high-molecular-weight proteins
    • 10.1021/ja1083656
    • Godoy-Ruiz R, Guo C, Tugarinov V (2010) Alanine methyl groups as NMR probes of molecular structure and dynamics in high-molecular-weight proteins. J Am Chem Soc 132:18340-18350
    • (2010) J Am Chem Soc , vol.132 , pp. 18340-18350
    • Godoy-Ruiz, R.1    Guo, C.2    Tugarinov, V.3
  • 14
    • 0037354160 scopus 로고    scopus 로고
    • A sensitive and robust method for obtaining intermolecular NOEs between side chains in large protein complexes
    • 10.1023/A:1022890112109
    • Gross JD, Gelev VM, Wagner G (2003) A sensitive and robust method for obtaining intermolecular NOEs between side chains in large protein complexes. J Biomol NMR 25:235-242
    • (2003) J Biomol NMR , vol.25 , pp. 235-242
    • Gross, J.D.1    Gelev, V.M.2    Wagner, G.3
  • 16
    • 50649121583 scopus 로고    scopus 로고
    • Solution structure of the integral human membrane protein VDAC-1 in detergent micelles
    • 2008Sci.321.1206H 10.1126/science.1161302
    • Hiller S, Garces RG, Malia TJ, Orekhov VY, Colombini M, Wagner G (2008) Solution structure of the integral human membrane protein VDAC-1 in detergent micelles. Science 321:1206-1210
    • (2008) Science , vol.321 , pp. 1206-1210
    • Hiller, S.1    Garces, R.G.2    Malia, T.J.3    Orekhov, V.Y.4    Colombini, M.5    Wagner, G.6
  • 17
    • 0034696680 scopus 로고    scopus 로고
    • Crystal structure of Escherichia coli malate synthase G complexed with magnesium and glyoxylate at 2.0 Å resolution: Mechanistic implications
    • 10.1021/bi992519h
    • Howard BR, Endrizzi JA, Remington SJ (2000) Crystal structure of Escherichia coli malate synthase G complexed with magnesium and glyoxylate at 2.0 Å resolution: mechanistic implications. Biochemistry 39:3156-3168
    • (2000) Biochemistry , vol.39 , pp. 3156-3168
    • Howard, B.R.1    Endrizzi, J.A.2    Remington, S.J.3
  • 18
    • 84865178190 scopus 로고    scopus 로고
    • Selective editing of Val and Leu methyl groups in high molecular weight protein NMR
    • 10.1007/s10858-012-9629-2
    • Hu W, Namanja AT, Wong S, Chen Y (2012) Selective editing of Val and Leu methyl groups in high molecular weight protein NMR. J Biomol NMR 53:113-124
    • (2012) J Biomol NMR , vol.53 , pp. 113-124
    • Hu, W.1    Namanja, A.T.2    Wong, S.3    Chen, Y.4
  • 19
    • 37849041010 scopus 로고    scopus 로고
    • A new labeling method for methyl transverse relaxation-optimized spectroscopy NMR spectra of alanine residues
    • 10.1021/ja0761784
    • Isaacson RL, Simpson PJ, Liu M, Cota E, Zhang X, Freemont P, Matthews S (2007) A new labeling method for methyl transverse relaxation-optimized spectroscopy NMR spectra of alanine residues. J Am Chem Soc 129:15428-15429
    • (2007) J Am Chem Soc , vol.129 , pp. 15428-15429
    • Isaacson, R.L.1    Simpson, P.J.2    Liu, M.3    Cota, E.4    Zhang, X.5    Freemont, P.6    Matthews, S.7
  • 20
    • 33644774471 scopus 로고    scopus 로고
    • Optimal isotope labelling for NMR protein structure determinations
    • 2006Natur.440.52K 10.1038/nature04525
    • Kainosho M, Torizawa T, Iwashita Y, Terauchi T, Mei Ono A, Güntert P (2006) Optimal isotope labelling for NMR protein structure determinations. Nature 440:52-57
    • (2006) Nature , vol.440 , pp. 52-57
    • Kainosho, M.1    Torizawa, T.2    Iwashita, Y.3    Terauchi, T.4    Mei Ono, A.5    Güntert, P.6
  • 21
    • 2342655666 scopus 로고    scopus 로고
    • Simplification of protein NOESY spectra using bioorganic precursor synthesis and NMR spectral editing
    • 10.1021/ja049679n
    • Lichtenecker R, Ludwiczek ML, Schmid W, Konrat R (2004) Simplification of protein NOESY spectra using bioorganic precursor synthesis and NMR spectral editing. J Am Chem Soc 126:5348-5349
    • (2004) J Am Chem Soc , vol.126 , pp. 5348-5349
    • Lichtenecker, R.1    Ludwiczek, M.L.2    Schmid, W.3    Konrat, R.4
  • 22
    • 84877050512 scopus 로고    scopus 로고
    • Selective isotope labelling of leucine residues by using α-ketoacid precursor compounds
    • Lichtenecker RJ, Coudevylle N, Konrat R, Schmid W (2013) Selective isotope labelling of leucine residues by using α-ketoacid precursor compounds. Chem Biochem 14:818-821
    • (2013) Chem Biochem , vol.14 , pp. 818-821
    • Lichtenecker, R.J.1    Coudevylle, N.2    Konrat, R.3    Schmid, W.4
  • 23
    • 84890030373 scopus 로고    scopus 로고
    • Differential isotope-labeling for Leu and Val residues in a protein by E. Coli cellular expression using stereo-specifically methyl labeled amino acids
    • doi: 10.1007/s10858-013-9784-0
    • Miyanoiri Y, Takeda M, Okuma K, Ono AM, Terauchi T, Kainosho M (2013) Differential isotope-labeling for Leu and Val residues in a protein by E. coli cellular expression using stereo-specifically methyl labeled amino acids. J Biomol NMR. doi: 10.1007/s10858-013-9784-0
    • (2013) J Biomol NMR.
    • Miyanoiri, Y.1    Takeda, M.2    Okuma, K.3    Ono, A.M.4    Terauchi, T.5    Kainosho, M.6
  • 24
    • 84872432729 scopus 로고    scopus 로고
    • Isotope-labelling of methyl groups for NMR studies of large proteins.
    • Clore GM, Potts J (eds) Recent developments in biomolecular NMR doi: 10.1039/9781849735391-00001
    • Plevin MJ, Boisbouvier J (2012) Isotope-labelling of methyl groups for NMR studies of large proteins. In: Clore GM, Potts J (eds) Recent developments in biomolecular NMR. Royal Society of Chemistry 1-24. doi: 10.1039/ 9781849735391-00001
    • (2012) Royal Society of Chemistry , pp. 1-24
    • Plevin, M.J.1    Boisbouvier, J.2
  • 25
    • 77649179384 scopus 로고    scopus 로고
    • Methyl groups as probes of supra-molecular structure, dynamics and function
    • 10.1007/s10858-009-9376-1
    • Ruschak A, Kay L (2010) Methyl groups as probes of supra-molecular structure, dynamics and function. J Biomol NMR 46:75-87
    • (2010) J Biomol NMR , vol.46 , pp. 75-87
    • Ruschak, A.1    Kay, L.2
  • 26
    • 33846460804 scopus 로고    scopus 로고
    • High-accuracy distance measurement between remote methyls in specifically protonated proteins
    • 10.1021/ja067260m
    • Sounier R, Blanchard L, Wu Z, Boisbouvier J (2007) High-accuracy distance measurement between remote methyls in specifically protonated proteins. J Am Chem Soc 129:472-473
    • (2007) J Am Chem Soc , vol.129 , pp. 472-473
    • Sounier, R.1    Blanchard, L.2    Wu, Z.3    Boisbouvier, J.4
  • 27
    • 33846928691 scopus 로고    scopus 로고
    • Quantitative dynamics and binding studies of the 20S proteasome by NMR
    • 10.1038/nature05512
    • Sprangers R, Kay LE (2007) Quantitative dynamics and binding studies of the 20S proteasome by NMR. Nature 445:618-622
    • (2007) Nature , vol.445 , pp. 618-622
    • Sprangers, R.1    Kay, L.E.2
  • 28
    • 34548304719 scopus 로고    scopus 로고
    • Solution NMR of supramolecular complexes: Providing new insights into function
    • 10.1038/nmeth1080
    • Sprangers R, Velyvis A, Kay LE (2007) Solution NMR of supramolecular complexes: providing new insights into function. Nat Meth 4:697-703
    • (2007) Nat Meth , vol.4 , pp. 697-703
    • Sprangers, R.1    Velyvis, A.2    Kay, L.E.3
  • 29
    • 0242407224 scopus 로고    scopus 로고
    • Ile, Leu, and Val methyl assignments of the 723-residue malate synthase G using a new labeling strategy and novel NMR methods
    • 10.1021/ja030345s
    • Tugarinov V, Kay LE (2003) Ile, Leu, and Val methyl assignments of the 723-residue malate synthase G using a new labeling strategy and novel NMR methods. J Am Chem Soc 125:13868-13878
    • (2003) J Am Chem Soc , vol.125 , pp. 13868-13878
    • Tugarinov, V.1    Kay, L.E.2
  • 30
    • 1242308875 scopus 로고    scopus 로고
    • An isotope labeling strategy for methyl TROSY spectroscopy
    • 10.1023/B:JNMR.0000013824.93994.1f
    • Tugarinov V, Kay LE (2004) An isotope labeling strategy for methyl TROSY spectroscopy. J Biomol NMR 28:165-172
    • (2004) J Biomol NMR , vol.28 , pp. 165-172
    • Tugarinov, V.1    Kay, L.E.2
  • 31
    • 0041930989 scopus 로고    scopus 로고
    • 13C NMR spectroscopy of methyl groups in very high molecular weight proteins and protein complexes
    • 10.1021/ja030153x
    • 13C NMR spectroscopy of methyl groups in very high molecular weight proteins and protein complexes. J Am Chem Soc 125:10420-10428
    • (2003) J Am Chem Soc , vol.125 , pp. 10420-10428
    • Tugarinov, V.1    Hwang, P.M.2    Ollerenshaw, J.E.3    Kay, L.E.4
  • 32
    • 14144254537 scopus 로고    scopus 로고
    • Solution NMR-derived global fold of a monomeric 82-kDa enzyme
    • 2005PNAS.102.622T 10.1073/pnas.0407792102
    • Tugarinov V, Choy W-Y, Orekhov VY, Kay LE (2005) Solution NMR-derived global fold of a monomeric 82-kDa enzyme. Proc Natl Acad Sci USA 102:622-627
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 622-627
    • Tugarinov, V.1    Choy, W.-Y.2    Orekhov, V.Y.3    Kay, L.E.4
  • 33
    • 34547687784 scopus 로고    scopus 로고
    • Isotope labeling strategies for the study of high-molecular-weight proteins by solution NMR spectroscopy
    • 10.1038/nprot.2006.101
    • Tugarinov V, Kanelis V, Kay LE (2006) Isotope labeling strategies for the study of high-molecular-weight proteins by solution NMR spectroscopy. Nat Protoc 1:749-754
    • (2006) Nat Protoc , vol.1 , pp. 749-754
    • Tugarinov, V.1    Kanelis, V.2    Kay, L.E.3
  • 34
    • 84866272306 scopus 로고    scopus 로고
    • 3-threonine for solution NMR studies of large protein complexes: Application to the 670 kDa proteasome
    • 2012PLoSO.743725V 10.1371/journal.pone.0043725
    • 3-threonine for solution NMR studies of large protein complexes: application to the 670 kDa proteasome. PLoS One 7:e43725
    • (2012) PLoS One , vol.7 , pp. 43725
    • Velyvis, A.1    Ruschak, A.M.2    Kay, L.E.3


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