메뉴 건너뛰기




Volumn 7, Issue 1, 2013, Pages

Assembly of eukaryotic algal chromosomes in yeast

Author keywords

Autonomously replicating sequence (ARS); Chromosome; Eukaryote; Phaeodactylum tricornutum; Saccharomyces cerevisiae; TAR cloning

Indexed keywords

DNA FRAGMENT; COMPLEMENTARY DNA; GENOMIC DNA; TRYPTOPHAN; URACIL;

EID: 84889784468     PISSN: None     EISSN: 17541611     Source Type: Journal    
DOI: 10.1186/1754-1611-7-30     Document Type: Article
Times cited : (56)

References (40)
  • 2
    • 84870718652 scopus 로고    scopus 로고
    • Complete Sequence of the First Chimera Genome Constructed by Cloning the Whole Genome of Synechocystis Strain PCC6803 into the Bacillus subtilis 168 Genome
    • 10.1128/JB.01798-12, 3510552, 23209249
    • Watanabe S, Shiwa Y, Itaya M, Yoshikawa H. Complete Sequence of the First Chimera Genome Constructed by Cloning the Whole Genome of Synechocystis Strain PCC6803 into the Bacillus subtilis 168 Genome. J Bacteriol 2012, 194:7007. 10.1128/JB.01798-12, 3510552, 23209249.
    • (2012) J Bacteriol , vol.194 , pp. 7007
    • Watanabe, S.1    Shiwa, Y.2    Itaya, M.3    Yoshikawa, H.4
  • 3
    • 27644564234 scopus 로고    scopus 로고
    • Combining two genomes in one cell: Stable cloning of the Synechocystis PCC6803 genome in the Bacillus subtilis 168 genome
    • 10.1073/pnas.0503868102, 1276048, 16236728
    • Itaya M, Tsuge K, Koizumi M, Fujita K. Combining two genomes in one cell: Stable cloning of the Synechocystis PCC6803 genome in the Bacillus subtilis 168 genome. Proc Natl Acad Sci USA 2005, 102:15971-15976. 10.1073/pnas.0503868102, 1276048, 16236728.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 15971-15976
    • Itaya, M.1    Tsuge, K.2    Koizumi, M.3    Fujita, K.4
  • 5
    • 84862742295 scopus 로고    scopus 로고
    • The Saccharomyces cerevisiae SCRaMbLE system and genome minimization
    • 3370935, 22572789
    • Dymond J, Boeke J. The Saccharomyces cerevisiae SCRaMbLE system and genome minimization. Bioeng Bugs 2012, 3:168-171. 3370935, 22572789.
    • (2012) Bioeng Bugs , vol.3 , pp. 168-171
    • Dymond, J.1    Boeke, J.2
  • 10
    • 84868247020 scopus 로고    scopus 로고
    • Cloning the Acholeplasma laidlawii PG-8A Genome in Saccharomyces cerevisiae as a Yeast Centromeric Plasmid
    • 10.1021/sb200013j, 23651007
    • Karas BJ, Tagwerker C, Yonemoto I, Hutchison CA, Smith HO. Cloning the Acholeplasma laidlawii PG-8A Genome in Saccharomyces cerevisiae as a Yeast Centromeric Plasmid. ACS Synth Biol 2012, 1:22-28. 10.1021/sb200013j, 23651007.
    • (2012) ACS Synth Biol , vol.1 , pp. 22-28
    • Karas, B.J.1    Tagwerker, C.2    Yonemoto, I.3    Hutchison, C.A.4    Smith, H.O.5
  • 13
    • 0025897085 scopus 로고
    • Yeast artificial chromosome libraries containing large inserts from mouse and human DNA
    • 10.1073/pnas.88.10.4123, 51610, 2034658
    • Larin Z, Monaco AP, Lehrach H. Yeast artificial chromosome libraries containing large inserts from mouse and human DNA. Proc Natl Acad Sci USA 1991, 88:4123-4127. 10.1073/pnas.88.10.4123, 51610, 2034658.
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 4123-4127
    • Larin, Z.1    Monaco, A.P.2    Lehrach, H.3
  • 14
    • 0025368589 scopus 로고
    • Construction and characterization of a yeast artificial chromosome library containing seven haploid human genome equivalents
    • 10.1073/pnas.87.11.4256, 54087, 2190217
    • Albertsen HM, Abderrahim H, Cann HM, Dausset J, Le Paslier D, Cohen D. Construction and characterization of a yeast artificial chromosome library containing seven haploid human genome equivalents. Proc Natl Acad Sci USA 1990, 87:4256-4260. 10.1073/pnas.87.11.4256, 54087, 2190217.
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 4256-4260
    • Albertsen, H.M.1    Abderrahim, H.2    Cann, H.M.3    Dausset, J.4    Le Paslier, D.5    Cohen, D.6
  • 15
    • 0032826310 scopus 로고    scopus 로고
    • Transfer of YACs up to 2.3 Mb intact into human cells with polyethylenimine
    • 10.1038/sj.gt.3300975, 10490774
    • Marschall P, Malik N, Larin Z. Transfer of YACs up to 2.3 Mb intact into human cells with polyethylenimine. Gene Ther 1999, 6:1634-1637. 10.1038/sj.gt.3300975, 10490774.
    • (1999) Gene Ther , vol.6 , pp. 1634-1637
    • Marschall, P.1    Malik, N.2    Larin, Z.3
  • 16
    • 0019052220 scopus 로고
    • Eukaryotic DNA segments capable of autonomous replication in yeast
    • 10.1073/pnas.77.8.4559, 349883, 6449009
    • Stinchcomb DT, Thomas M, Kelly J, Selker E, Davis RW. Eukaryotic DNA segments capable of autonomous replication in yeast. Proc Natl Acad Sci USA 1980, 77:4559-4563. 10.1073/pnas.77.8.4559, 349883, 6449009.
    • (1980) Proc Natl Acad Sci USA , vol.77 , pp. 4559-4563
    • Stinchcomb, D.T.1    Thomas, M.2    Kelly, J.3    Selker, E.4    Davis, R.W.5
  • 19
    • 42249101939 scopus 로고    scopus 로고
    • Centromere structures highlighted by the 100%-complete Cyanidioschyzon merolae genome
    • 10.4161/psb.3.2.5066, 2634006, 19704736
    • Maruyama S, Matsuzaki M, Kuroiwa H, Miyagishima S-Y, Tanaka K, Kuroiwa T, Nozaki H. Centromere structures highlighted by the 100%-complete Cyanidioschyzon merolae genome. Plant Signal Behav 2008, 3:140-141. 10.4161/psb.3.2.5066, 2634006, 19704736.
    • (2008) Plant Signal Behav , vol.3 , pp. 140-141
    • Maruyama, S.1    Matsuzaki, M.2    Kuroiwa, H.3    Miyagishima, S.-Y.4    Tanaka, K.5    Kuroiwa, T.6    Nozaki, H.7
  • 21
    • 0029966913 scopus 로고    scopus 로고
    • Stable nuclear transformation of the diatom Phaeodactylum tricornutum
    • Apt KE, Kroth-Pancic PG, Grossman AR. Stable nuclear transformation of the diatom Phaeodactylum tricornutum. Mol Gen Genet 1996, 252:572-579.
    • (1996) Mol Gen Genet , vol.252 , pp. 572-579
    • Apt, K.E.1    Kroth-Pancic, P.G.2    Grossman, A.R.3
  • 22
    • 84861829358 scopus 로고    scopus 로고
    • Potential role of multiple carbon fixation pathways during lipid accumulation in Phaeodactylum tricornutum
    • 10.1186/1754-6834-5-40, 3457861, 22672912
    • Valenzuela J, Mazurie A, Carlson RP, Gerlach R, Cooksey KE, Peyton BM, Fields MW. Potential role of multiple carbon fixation pathways during lipid accumulation in Phaeodactylum tricornutum. Biotechnol Biofuels 2012, 5:40. 10.1186/1754-6834-5-40, 3457861, 22672912.
    • (2012) Biotechnol Biofuels , vol.5 , pp. 40
    • Valenzuela, J.1    Mazurie, A.2    Carlson, R.P.3    Gerlach, R.4    Cooksey, K.E.5    Peyton, B.M.6    Fields, M.W.7
  • 23
    • 59449103424 scopus 로고    scopus 로고
    • Diatoms in biotechnology: modern tools and applications
    • 10.1007/s00253-008-1804-8, 19082585
    • Bozarth A, Maier U-G, Zauner S. Diatoms in biotechnology: modern tools and applications. Appl Microbiol Biotechnol 2009, 82:195-201. 10.1007/s00253-008-1804-8, 19082585.
    • (2009) Appl Microbiol Biotechnol , vol.82 , pp. 195-201
    • Bozarth, A.1    Maier, U.-G.2    Zauner, S.3
  • 24
    • 2342566981 scopus 로고    scopus 로고
    • Exploring transformation-associated recombination cloning for selective isolation of genomic regions
    • Kouprina N, Noskov V, Koriabine M, Leem S-H, Larionov V. Exploring transformation-associated recombination cloning for selective isolation of genomic regions. Methods Mol Biol 2004, 255:69-90.
    • (2004) Methods Mol Biol , vol.255 , pp. 69-90
    • Kouprina, N.1    Noskov, V.2    Koriabine, M.3    Leem, S.-H.4    Larionov, V.5
  • 25
    • 0030040287 scopus 로고    scopus 로고
    • Specific cloning of human DNA as yeast artificial chromosomes by transformation-associated recombination
    • 10.1073/pnas.93.1.491, 40264, 8552668
    • Larionov V, Kouprina N, Graves J, Chen XN, Korenberg JR, Resnick MA. Specific cloning of human DNA as yeast artificial chromosomes by transformation-associated recombination. Proc Natl Acad Sci USA 1996, 93:491-496. 10.1073/pnas.93.1.491, 40264, 8552668.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 491-496
    • Larionov, V.1    Kouprina, N.2    Graves, J.3    Chen, X.N.4    Korenberg, J.R.5    Resnick, M.A.6
  • 26
    • 33748800981 scopus 로고    scopus 로고
    • TAR cloning: insights into gene function, long-range haplotypes and genome structure and evolution
    • 10.1038/nrg1943, 16983376
    • Kouprina N, Larionov V. TAR cloning: insights into gene function, long-range haplotypes and genome structure and evolution. Nat Rev Genet 2006, 7:805-812. 10.1038/nrg1943, 16983376.
    • (2006) Nat Rev Genet , vol.7 , pp. 805-812
    • Kouprina, N.1    Larionov, V.2
  • 27
    • 0021668558 scopus 로고
    • A positive selection for mutants lacking orotidine-5'-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance
    • 10.1007/BF00330984, 6394957
    • Boeke J, Croute F, Fink G. A positive selection for mutants lacking orotidine-5'-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance. Mol Gen Genet 1984, 197:345-346. 10.1007/BF00330984, 6394957.
    • (1984) Mol Gen Genet , vol.197 , pp. 345-346
    • Boeke, J.1    Croute, F.2    Fink, G.3
  • 28
    • 77952514791 scopus 로고    scopus 로고
    • Tandem repeat coupled with endonuclease cleavage (TREC): a seamless modification tool for genome engineering in yeast
    • 10.1093/nar/gkq099, 2860121, 20228123
    • Noskov VN, Segall-Shapiro TH, Chuang R-Y. Tandem repeat coupled with endonuclease cleavage (TREC): a seamless modification tool for genome engineering in yeast. Nucl Acids Res 2010, 38:2570-2576. 10.1093/nar/gkq099, 2860121, 20228123.
    • (2010) Nucl Acids Res , vol.38 , pp. 2570-2576
    • Noskov, V.N.1    Segall-Shapiro, T.H.2    Chuang, R.-Y.3
  • 29
    • 17744373298 scopus 로고    scopus 로고
    • GC composition of the human genome: in search of isochores
    • 10.1093/molbev/msi115, 15728737
    • Cohen N, Dagan T, Stone L, Graur D. GC composition of the human genome: in search of isochores. Mol Biol Evol 2005, 22:1260-1272. 10.1093/molbev/msi115, 15728737.
    • (2005) Mol Biol Evol , vol.22 , pp. 1260-1272
    • Cohen, N.1    Dagan, T.2    Stone, L.3    Graur, D.4
  • 31
    • 0030884943 scopus 로고    scopus 로고
    • Marked improvement of PAC and BAC cloning is achieved using electroelution of pulsed-field gel-separated partial digests of genomic DNA
    • 10.1093/nar/25.19.3959, 146981, 9380525
    • Strong SJ, Ohta Y, Litman GW, Amemiya CT. Marked improvement of PAC and BAC cloning is achieved using electroelution of pulsed-field gel-separated partial digests of genomic DNA. Nucleic Acids Res 1997, 25:3959-3961. 10.1093/nar/25.19.3959, 146981, 9380525.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3959-3961
    • Strong, S.J.1    Ohta, Y.2    Litman, G.W.3    Amemiya, C.T.4
  • 32
    • 0032529138 scopus 로고    scopus 로고
    • An improved approach for construction of bacterial artificial chromosome libraries
    • 10.1006/geno.1998.5423, 9740665
    • Osoegawa K, Woon PY, Zhao B, Frengen E, Tateno M, Catanese JJ, de Jong PJ. An improved approach for construction of bacterial artificial chromosome libraries. Genomics 1998, 52:1-8. 10.1006/geno.1998.5423, 9740665.
    • (1998) Genomics , vol.52 , pp. 1-8
    • Osoegawa, K.1    Woon, P.Y.2    Zhao, B.3    Frengen, E.4    Tateno, M.5    Catanese, J.J.6    de Jong, P.J.7
  • 34
    • 13944250898 scopus 로고    scopus 로고
    • Comparative genomics of the pennate diatom Phaeodactylum tricornutum
    • 10.1104/pp.104.052829, 1065351, 15665249
    • Montsant A, Jabbari K, Maheswari U, Bowler C. Comparative genomics of the pennate diatom Phaeodactylum tricornutum. Plant Physiol 2005, 137:500-513. 10.1104/pp.104.052829, 1065351, 15665249.
    • (2005) Plant Physiol , vol.137 , pp. 500-513
    • Montsant, A.1    Jabbari, K.2    Maheswari, U.3    Bowler, C.4
  • 35
    • 6344271329 scopus 로고    scopus 로고
    • UNESCO Publishing, Hallegraeff GM, Anderson DM, Cembella AD
    • Manual on Harmful Marine Microalgae 2003, UNESCO Publishing, Hallegraeff GM, Anderson DM, Cembella AD.
    • (2003) Manual on Harmful Marine Microalgae
  • 38
    • 0032790451 scopus 로고    scopus 로고
    • Transformation of nonselectable reporter genes in marine diatoms
    • 10.1007/PL00011773, 10383998
    • Falciatore A, Casotti R, Leblanc C, Abrescia C, Bowler C. Transformation of nonselectable reporter genes in marine diatoms. Mar Biotechnol 1999, 1:239-251. 10.1007/PL00011773, 10383998.
    • (1999) Mar Biotechnol , vol.1 , pp. 239-251
    • Falciatore, A.1    Casotti, R.2    Leblanc, C.3    Abrescia, C.4    Bowler, C.5
  • 40
    • 33644792045 scopus 로고    scopus 로고
    • Yeast transformation by the LiAc/SS Carrier DNA/PEG method
    • Gietz RD, Woods RA. Yeast transformation by the LiAc/SS Carrier DNA/PEG method. Methods Mol Biol 2005, 313:107.
    • (2005) Methods Mol Biol , vol.313 , pp. 107
    • Gietz, R.D.1    Woods, R.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.