-
1
-
-
19944376457
-
Global identification of human transcribed sequences with genome tiling arrays
-
Bertone,P. et al. (2004) Global identification of human transcribed sequences with genome tiling arrays. Science, 306 2242-2246.
-
(2004)
Science
, vol.306
, pp. 2242-2246
-
-
Bertone, P.1
-
2
-
-
32044460122
-
Design optimization methods for genomic DNA tiling arrays
-
Bertone,P. et al. (2006) Design optimization methods for genomic DNA tiling arrays. Genome Res., 16, 271-281.
-
(2006)
Genome Res
, vol.16
, pp. 271-281
-
-
Bertone, P.1
-
3
-
-
0003803285
-
-
University Science Books, Herndon, VA, USA
-
Bloomfield,V.A. et al. (2000) Nucleic Acids: Structures, Properties, and Functions. University Science Books, Herndon, VA, USA.
-
(2000)
Nucleic Acids: Structures, Properties, and Functions
-
-
Bloomfield, V.A.1
-
4
-
-
1242316281
-
ChIP-chip: Considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments
-
Buck,M.J. and Lieb,J.D. (2004) ChIP-chip: Considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments. Genomics, 83, 349-360.
-
(2004)
Genomics
, vol.83
, pp. 349-360
-
-
Buck, M.J.1
Lieb, J.D.2
-
5
-
-
31344436263
-
ChIPOTle: A user-friendly tool for the analysis of ChIP-chip data
-
Buck,M.J. et al. (2005) ChIPOTle: A user-friendly tool for the analysis of ChIP-chip data. Genome Biol., 6, R97.
-
(2005)
Genome Biol
, vol.6
-
-
Buck, M.J.1
-
6
-
-
0003573193
-
A Block-Sorting Lossless Data Compression Algorithm
-
124. Digital Systems Research Center
-
Burrows,M. and Wheeler,D. (1994) A Block-Sorting Lossless Data Compression Algorithm. Research Report 124. Digital Systems Research Center.
-
(1994)
Research Report
-
-
Burrows, M.1
Wheeler, D.2
-
7
-
-
2442707676
-
The Ensembl automatic gene annotation system
-
Curwen,V. et al. (2004) The Ensembl automatic gene annotation system. Genome Res, 14, 942-950.
-
(2004)
Genome Res
, vol.14
, pp. 942-950
-
-
Curwen, V.1
-
8
-
-
34250376888
-
Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome
-
Advance online publication, doi: 10.1101/gr.5014606 21 November
-
Emanuelsson,O. et al. (2006) Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome. Genome Res., Advance online publication, doi: 10.1101/gr.5014606 (21 November 2006).
-
(2006)
Genome Res
-
-
Emanuelsson, O.1
-
9
-
-
7444260846
-
The ENCODE (ENCyclopedia Of DNA Elements) Project
-
ENCODE Project Consortium
-
ENCODE Project Consortium (2004) The ENCODE (ENCyclopedia Of DNA Elements) Project. Science, 306, 636-640.
-
(2004)
Science
, vol.306
, pp. 636-640
-
-
-
11
-
-
34147178497
-
Compressed Representations of Sequences and Full-Text Indexes. ACM Trans. Algorithms
-
to appear
-
Ferragina,P. et al. (2006) Compressed Representations of Sequences and Full-Text Indexes. ACM Trans. Algorithms, to appear.
-
(2006)
-
-
Ferragina, P.1
-
12
-
-
0042695715
-
Efficient implementation of lazy suffix trees
-
Giegerich,R. et al. (2003) Efficient implementation of lazy suffix trees, Softw. Pract. Exper., 33, 1035-1049.
-
(2003)
Softw. Pract. Exper
, vol.33
, pp. 1035-1049
-
-
Giegerich, R.1
-
13
-
-
33846614650
-
A high-resolution map of segmental DNA copy number variation in the mouse genome
-
Graubert,T.A. et al. (2007) A high-resolution map of segmental DNA copy number variation in the mouse genome. PLoS Genet., 3, e3.
-
(2007)
PLoS Genet
, vol.3
-
-
Graubert, T.A.1
-
14
-
-
29944442957
-
Targeted discovery tools: Proteomics and chromatin immunoprecipitation-on-chip
-
Guezennec,X.L. et al. (2005) Targeted discovery tools: Proteomics and chromatin immunoprecipitation-on-chip. BJU Int, 96 Suppl. 2), 16-22.
-
(2005)
BJU Int
, vol.96
, Issue.SUPPL. 2
, pp. 16-22
-
-
Guezennec, X.L.1
-
16
-
-
0142028977
-
Annotating large genomes with exact word matches
-
Healy,J. et al. (2003) Annotating large genomes with exact word matches. Genome Res., 13, 2306-2315.
-
(2003)
Genome Res
, vol.13
, pp. 2306-2315
-
-
Healy, J.1
-
17
-
-
33747856481
-
Transcript mapping with highdensity oligonucleotide tiling arrays
-
Huber,W. et al. (2006) Transcript mapping with highdensity oligonucleotide tiling arrays. Bioinformatics, 22, 1963-1970.
-
(2006)
Bioinformatics
, vol.22
, pp. 1963-1970
-
-
Huber, W.1
-
18
-
-
0037012881
-
Large-scale transcriptional activity in chromosomes 21 and 22
-
Kapranov,P. et al. (2002) Large-scale transcriptional activity in chromosomes 21 and 22. Science, 296, 916-919.
-
(2002)
Science
, vol.296
, pp. 916-919
-
-
Kapranov, P.1
-
19
-
-
0036226603
-
BLAT The BLAST-Like Alignment Tool
-
Kent,W.J. (2002) BLAT The BLAST-Like Alignment Tool. Genome Res., 12, 656-664.
-
(2002)
Genome Res
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
20
-
-
22344435841
-
Direct isolation and identification of promoters in the human genome
-
Kim,T.H. et al. (2005a) Direct isolation and identification of promoters in the human genome. Genome Res., 15, 830-839.
-
(2005)
Genome Res
, vol.15
, pp. 830-839
-
-
Kim, T.H.1
-
21
-
-
23844519339
-
A high-resolution map of active promoters in the human genome
-
Kim,T.H. et al. (2005b) A high-resolution map of active promoters in the human genome. Nature, 436, 876-880.
-
(2005)
Nature
, vol.436
, pp. 876-880
-
-
Kim, T.H.1
-
22
-
-
34250307630
-
The landscape of histone modifications across 1% of the human genome in five human cell lines
-
Koch,C.M. et al. (2007) The landscape of histone modifications across 1% of the human genome in five human cell lines. Genome Res. 17, 691-70.
-
(2007)
Genome Res
, vol.17
, pp. 691-670
-
-
Koch, C.M.1
-
23
-
-
0033227559
-
Reducing the space requirement of suffix trees
-
Kurtz,S. (1999) Reducing the space requirement of suffix trees. Softw. Pract. Exper., 29, 1149-1171.
-
(1999)
Softw. Pract. Exper
, vol.29
, pp. 1149-1171
-
-
Kurtz, S.1
-
24
-
-
10544256600
-
Expression monitoring by hybridization to high-density oligonucleotide arrays
-
Lockhart,D.J. et al. (1996) Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat. Biotechnol., 14 1675-1680.
-
(1996)
Nat. Biotechnol
, vol.14
, pp. 1675-1680
-
-
Lockhart, D.J.1
-
25
-
-
10744231187
-
Representational oligonucleotide microarray analysis: A high-resolution method to detect genome copy number variation
-
Lucito,R. et al. (2003) Representational oligonucleotide microarray analysis: A high-resolution method to detect genome copy number variation. Genome Res., 13, 2291-2305.
-
(2003)
Genome Res
, vol.13
, pp. 2291-2305
-
-
Lucito, R.1
-
26
-
-
0027681165
-
Suffix arrays: A new method for on-line string searches
-
Manber,U. and Myers,E. (1993) Suffix arrays: A new method for on-line string searches. SIAM J. Comput., 22, 935-948.
-
(1993)
SIAM J. Comput
, vol.22
, pp. 935-948
-
-
Manber, U.1
Myers, E.2
-
27
-
-
15444372817
-
The profile of repeat-associated histone lysine methylation states in the mouse genome
-
Martens,J. et al. (2005) The profile of repeat-associated histone lysine methylation states in the mouse genome. EMBO J., 24, 800-812.
-
(2005)
EMBO J
, vol.24
, pp. 800-812
-
-
Martens, J.1
-
28
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Mouse Genome Sequencing Consortium
-
Mouse Genome Sequencing Consortium (2002) Initial sequencing and comparative analysis of the mouse genome. Nature, 420, 520-562.
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
-
29
-
-
10644236411
-
The LZ-index: A text index based on the Ziv Lempel trie
-
Navarro,G. (2004) The LZ-index: A text index based on the Ziv Lempel trie. J. Discrete Algorithms, 2, 87-114.
-
(2004)
J. Discrete Algorithms
, vol.2
, pp. 87-114
-
-
Navarro, G.1
-
30
-
-
33747069931
-
High-resolution computational models of genome binding events
-
Qi, Y. et al. (2006) High-resolution computational models of genome binding events. Nat. Biotechnol., 24, 963-970.
-
(2006)
Nat. Biotechnol
, vol.24
, pp. 963-970
-
-
Qi, Y.1
-
31
-
-
27944435825
-
Binding sites for metabolic disease related transcription factors inferred at base pair resolution by chromatin immunoprecipitation and genomic microarrays
-
Rada-Iglesias,A. et al. (2005) Binding sites for metabolic disease related transcription factors inferred at base pair resolution by chromatin immunoprecipitation and genomic microarrays. Hum Mol Genet 14, 3435-3447.
-
(2005)
Hum Mol Genet
, vol.14
, pp. 3435-3447
-
-
Rada-Iglesias, A.1
-
32
-
-
33645310161
-
MAMMOT - a set of tools for the design, management and visualization of genomic tiling arrays
-
Ryder,E. et al. (2006) MAMMOT - a set of tools for the design, management and visualization of genomic tiling arrays. Bioinformatics 22, 883-884.
-
(2006)
Bioinformatics
, vol.22
, pp. 883-884
-
-
Ryder, E.1
-
34
-
-
34547846931
-
-
Smit,A. et al. (1996-2004) RepeatMasker Open-3.0. http://www.repeatmasker.org
-
Smit,A. et al. (1996-2004) RepeatMasker Open-3.0. http://www.repeatmasker.org
-
-
-
-
35
-
-
0037958765
-
Selection of oligonucleotide probes for protein coding sequences
-
Wang,X. and Seed,B. (2003) Selection of oligonucleotide probes for protein coding sequences. Bioinformatics, 19, 796-802.
-
(2003)
Bioinformatics
, vol.19
, pp. 796-802
-
-
Wang, X.1
Seed, B.2
-
36
-
-
85043482370
-
Linear Pattern Matching Algorithms
-
The University of Iowa, Iowa City, IEEE Computer Society, Publications Office. Northridge, CA, USA. pp
-
Weiner,P. (1973) Linear Pattern Matching Algorithms. In Proceedings of the 14th IEEE Annual Symposium on Switching and Automata Theory, The University of Iowa, Iowa City, IEEE Computer Society, Publications Office. Northridge, CA, USA. pp. 1-11.
-
(1973)
Proceedings of the 14th IEEE Annual Symposium on Switching and Automata Theory
, pp. 1-11
-
-
Weiner, P.1
|