-
1
-
-
79958059617
-
Structure-Based Insights into the Catalytic Power and Conformational Dexterity of Peroxiredoxins
-
Hall, A., Nelson, K., Poole, L. B., and Karplus, P. A. (2011) Structure-Based Insights into the Catalytic Power and Conformational Dexterity of Peroxiredoxins Antioxid. Redox Signaling 15, 795-815
-
(2011)
Antioxid. Redox Signaling
, vol.15
, pp. 795-815
-
-
Hall, A.1
Nelson, K.2
Poole, L.B.3
Karplus, P.A.4
-
2
-
-
42249088093
-
Reconciling the chemistry and biology of reactive oxygen species
-
DOI 10.1038/nchembio.85, PII NCHEMBIO85
-
Winterbourn, C. C. (2008) Reconciling the Chemistry and Biology of Reactive Oxygen Species Nat. Chem. Biol. 4, 278-286 (Pubitemid 351550893)
-
(2008)
Nature Chemical Biology
, vol.4
, Issue.5
, pp. 278-286
-
-
Winterbourn, C.C.1
-
3
-
-
73849144014
-
Mitochondrial Peroxiredoxin Involvement in Antioxidant Defense and Redox Signaling
-
Cox, A. G., Winterbourn, C. C., and Hampton, M. B. (2010) Mitochondrial Peroxiredoxin Involvement in Antioxidant Defense and Redox Signaling Biochem. J. 425, 313-325
-
(2010)
Biochem. J.
, vol.425
, pp. 313-325
-
-
Cox, A.G.1
Winterbourn, C.C.2
Hampton, M.B.3
-
4
-
-
0032060482
-
Alkyl hydroperoxide reductase subunit C (AhpC) protects bacterial and human cells against reactive nitrogen intermediates
-
Chen, L., Xie, Q., and Nathan, C. (1998) Alkyl Hydroperoxide Reductase Subunit C (AhpC) Protects Bacterial and Human Cells against Reactive Nitrogen Intermediates Mol. Cell 1, 795-805 (Pubitemid 128379064)
-
(1998)
Molecular Cell
, vol.1
, Issue.6
, pp. 795-805
-
-
Chen, L.1
Xie, Q.-W.2
Nathan, C.3
-
5
-
-
0031570501
-
Mechanisms of nitric oxide-related antimicrobial activity
-
Fang, F. C. (1997) Perspectives Series: Host/Pathogen Interactions. Mechanisms of Nitric Oxide-Related Antimicrobial Activity J. Clin. Invest. 99, 2818-2825 (Pubitemid 27278655)
-
(1997)
Journal of Clinical Investigation
, vol.99
, Issue.12
, pp. 2818-2825
-
-
Fang, F.C.1
-
6
-
-
0035209075
-
Alkyl hydroperoxide reductase is the primary scavenger of endogenous hydrogen peroxide in Escherichia coli
-
DOI 10.1128/JB.183.24.7173-7181.2001
-
Seaver, L. C. and Imlay, J. A. (2001) Alkyl Hydroperoxide Reductase Is the Primary Scavenger of Endogenous Hydrogen Peroxide in Escherichia coli J. Bacteriol. 183, 7173-7181 (Pubitemid 33121851)
-
(2001)
Journal of Bacteriology
, vol.183
, Issue.24
, pp. 7173-7181
-
-
Seaver, L.C.1
Imlay, J.A.2
-
7
-
-
33846561089
-
Catalase (KatA) and alkyl hydroperoxide reductase (AhpC) have compensatory roles in peroxide stress resistance and are required for survival, persistence, and nasal colonization in Staphylococcus aureus
-
DOI 10.1128/JB.01524-06
-
Cosgrove, K. 2007, Catalase (KatA) and Alkyl Hydroperoxide Reductase (AhpC) Have Compensatory Roles in Peroxide Stress Resistance and Are Required for Survival, Persistence, and Nasal Colonization in Staphylococcus aureus J. Bacteriol. 189, 1025-1035 (Pubitemid 46183877)
-
(2007)
Journal of Bacteriology
, vol.189
, Issue.3
, pp. 1025-1035
-
-
Cosgrove, K.1
Coutts, G.2
Jonsson, I.-M.3
Tarkowski, A.4
Kokai-Kun, J.F.5
Mond, J.J.6
Foster, S.J.7
-
8
-
-
0035108401
-
Essential thioredoxin-dependent peroxiredoxin system from Helicobacter pylori: Genetic and kinetic characterization
-
DOI 10.1128/JB.183.6.1961-1973.2001
-
Baker, L. M. S., Raudonikiene, A., Hoffman, P. S., and Poole, L. B. (2001) Essential Thioredoxin-Dependent Peroxiredoxin System from Helicobacter pylori: Genetic and Kinetic Characterization J. Bacteriol. 183, 1961-1973 (Pubitemid 32225991)
-
(2001)
Journal of Bacteriology
, vol.183
, Issue.6
, pp. 1961-1973
-
-
Baker, L.M.S.1
Raudonikiene, A.2
Hoffman, P.S.3
Poole, L.B.4
-
9
-
-
84889259492
-
In Vitro and in Vivo Characterization of Alkyl Hydroperoxide Reductase Mutant Strains of Helicobacter hepaticus
-
Mehta, N. S., Benoit, S. L., Mysore, J., and Maier, R. J. (1770) In Vitro and in Vivo Characterization of Alkyl Hydroperoxide Reductase Mutant Strains of Helicobacter hepaticus Biochim. Biophys. Acta 257-265, 2007
-
(1770)
Biochim. Biophys. Acta
, vol.257-265
, pp. 2007
-
-
Mehta, N.S.1
Benoit, S.L.2
Mysore, J.3
Maier, R.J.4
-
10
-
-
0242668686
-
Peroxiredoxin evolution and the regulation of hydrogen peroxide signaling
-
DOI 10.1126/science.1080405
-
Wood, Z. A., Poole, L. B., and Karplus, P. A. (2003) Peroxiredoxin Evolution and the Regulation of Hydrogen Peroxide Signaling Science 300, 650-653 (Pubitemid 36520591)
-
(2003)
Science
, vol.300
, Issue.5619
, pp. 650-653
-
-
Wood, Z.A.1
Poole, L.B.2
Karplus, P.A.3
-
11
-
-
84856940017
-
Peroxiredoxin Functions as a Peroxidase and a Regulator and Sensor of Local Peroxides
-
Rhee, S. G., Woo, H. A., Kil, I. S., and Bae, S. H. (2012) Peroxiredoxin Functions as a Peroxidase and a Regulator and Sensor of Local Peroxides J. Biol. Chem. 287, 4403-4410
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 4403-4410
-
-
Rhee, S.G.1
Woo, H.A.2
Kil, I.S.3
Bae, S.H.4
-
12
-
-
34548148201
-
Hydrogen peroxide: A metabolic by-product or a common mediator of ageing signals?
-
DOI 10.1038/nrm2240, PII NRM2240
-
Giorgio, M., Trinei, M., Migliaccio, E., and Pelicci, P. G. (2007) Hydrogen Peroxide: A Metabolic by-Product or a Common Mediator of Ageing Signals? Nat. Rev. Mol. Cell Biol. 8, 722-728 (Pubitemid 47312827)
-
(2007)
Nature Reviews Molecular Cell Biology
, vol.8
, Issue.9
, pp. 722-728
-
-
Giorgio, M.1
Trinei, M.2
Migliaccio, E.3
Pelicci, P.G.4
-
13
-
-
17644390613
-
2: Regulation of peroxiredoxin, catalase, and glutathione peroxidase via post-translational modification
-
DOI 10.1089/ars.2005.7.619
-
2: Regulation of Peroxiredoxin, Catalase, and Glutathione Peroxidase via Post-Translational Modification Antiox. Redox Signaling 7, 619-626 (Pubitemid 40563199)
-
(2005)
Antioxidants and Redox Signaling
, vol.7
, Issue.5-6
, pp. 619-626
-
-
Rhee, S.G.1
Yang, K.-S.2
Kang, S.W.3
Woo, H.A.4
Chang, T.-S.5
-
14
-
-
80053476859
-
Conformation-Sensing Antibodies Stabilize the Oxidized Form of PTP1B and Inhibit Its Phosphatase Activity
-
Haque, A., Andersen, J. N., Salmeen, A., Barford, D., and Tonks, N. K. (2011) Conformation-Sensing Antibodies Stabilize the Oxidized Form of PTP1B and Inhibit Its Phosphatase Activity Cell 147, 185-198
-
(2011)
Cell
, vol.147
, pp. 185-198
-
-
Haque, A.1
Andersen, J.N.2
Salmeen, A.3
Barford, D.4
Tonks, N.K.5
-
15
-
-
84861964383
-
2-Dependent, Reversible Inactivation of Peroxiredoxin III in Mitochondria
-
2-Dependent, Reversible Inactivation of Peroxiredoxin III in Mitochondria Mol. Cell 46, 584-594
-
(2012)
Mol. Cell
, vol.46
, pp. 584-594
-
-
Kil, I.S.1
-
16
-
-
77956541126
-
T-LAK Cell-Originated Protein Kinase (TOPK) Phosphorylation of Prx1 at Ser-32 Prevents UVB-induced Apoptosis in RPMI7951 Melanoma Cells through the Regulation of Prx1 Peroxidase Activity
-
Zykova, T. A. 2010, T-LAK Cell-Originated Protein Kinase (TOPK) Phosphorylation of Prx1 at Ser-32 Prevents UVB-induced Apoptosis in RPMI7951 Melanoma Cells through the Regulation of Prx1 Peroxidase Activity J. Biol. Chem. 285, 29138-29146
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 29138-29146
-
-
Zykova, T.A.1
-
17
-
-
0037067763
-
Regulation of peroxiredoxin I activity by Cdc2-mediated phosphorylation
-
DOI 10.1074/jbc.M110432200
-
Chang, T.-S., Jeong, W., Choi, S. Y., Yu, S., Kang, S. W., and Rhee, S. G. (2002) Regulation of Peroxiredoxin I Activity by Cdc2-Mediated Phosphorylation J. Biol. Chem. 277, 25370-25376 (Pubitemid 34951848)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.28
, pp. 25370-25376
-
-
Chang, T.-S.1
Jeong, W.2
Choi, S.Y.3
Yu, S.4
Kang, S.W.5
Rhee, S.G.6
-
18
-
-
47749156827
-
HDAC6 is a specific deacetylase of peroxiredoxins and is involved in redox regulation
-
DOI 10.1073/pnas.0803749105
-
Parmigiani, R. B., Xu, W. S., Venta-Perez, G., Erdjument-Bromage, H., Yaneva, M., Tempst, P., and Marks, P. A. (2008) HDAC6 is a Specific Deacetylase of Peroxiredoxins and Is Involved in Redox Regulation Proc. Natl. Acad. Sci. U.S.A. 105, 9633-9638 (Pubitemid 352031352)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.28
, pp. 9633-9638
-
-
Parmigiani, R.B.1
Xu, W.S.2
Venta-Perez, G.3
Erdjument-Bromage, H.4
Yaneva, M.5
Tempst, P.6
Marks, P.A.7
-
19
-
-
79953871561
-
Glutathionylation of Peroxiredoxin i Induces Decamer to Dimers Dissociation with Concomitant Loss of Chaperone Activity
-
Park, J. W., Piszczek, G., Rhee, S. G., and Chock, P. B. (2011) Glutathionylation of Peroxiredoxin I Induces Decamer to Dimers Dissociation with Concomitant Loss of Chaperone Activity Biochemistry 50, 3204-3210
-
(2011)
Biochemistry
, vol.50
, pp. 3204-3210
-
-
Park, J.W.1
Piszczek, G.2
Rhee, S.G.3
Chock, P.B.4
-
20
-
-
0032473915
-
Porcine natural-killer-enhancing factor-B: Oligomerisation and identification as a calpain substrate in vitro
-
DOI 10.1016/S0167-4838(97)00217-3, PII S0167483897002173
-
Schröder, E., Willis, A. C., and Ponting, C. P. (1998) Porcine Natural-Killer-Enhancing Factor-B: Oligomerisation and Identification As a Calpain Substrate in Vitro Biochim. Biophys. Acta 1383, 279-291 (Pubitemid 28193002)
-
(1998)
Biochimica et Biophysica Acta - Protein Structure and Molecular Enzymology
, vol.1383
, Issue.2
, pp. 279-291
-
-
Schroder, E.1
Willis, A.C.2
Ponting, C.P.3
-
21
-
-
79551493261
-
Analysis of the Peroxiredoxin Family: Using Active-Site Structure and Sequence Information for Global Classification and Residue Analysis
-
Nelson, K. J., Knutson, S. T., Soito, L., Klomsiri, C., Poole, L. B., and Fetrow, J. S. (2010) Analysis of the Peroxiredoxin Family: Using Active-Site Structure and Sequence Information for Global Classification and Residue Analysis Proteins: Struct., Funct., Bioinf. 79, 947-964
-
(2010)
Proteins: Struct., Funct., Bioinf.
, vol.79
, pp. 947-964
-
-
Nelson, K.J.1
Knutson, S.T.2
Soito, L.3
Klomsiri, C.4
Poole, L.B.5
Fetrow, J.S.6
-
22
-
-
0037197672
-
Dimers to doughnuts: Redox-sensitive oligomerization of 2-cysteine peroxiredoxins
-
DOI 10.1021/bi012173m
-
Wood, Z. A., Poole, L. B., Hantgan, R. R., and Karplus, P. A. (2002) Dimers to Doughnuts: Redox-Sensitive Oligomerization of 2-Cysteine Peroxiredoxins Biochemistry 41, 5493-5504 (Pubitemid 34429383)
-
(2002)
Biochemistry
, vol.41
, Issue.17
, pp. 5493-5504
-
-
Wood, Z.A.1
Poole, L.B.2
Hantgan, R.R.3
Karplus, P.A.4
-
23
-
-
57049161455
-
Cysteine pKa Values for the Bacterial Peroxiredoxin AhpC
-
Nelson, K. J., Parsonage, D., Hall, A., Karplus, P. A., and Poole, L. B. (2008) Cysteine pKa Values for the Bacterial Peroxiredoxin AhpC Biochemistry 47, 12860-12868
-
(2008)
Biochemistry
, vol.47
, pp. 12860-12868
-
-
Nelson, K.J.1
Parsonage, D.2
Hall, A.3
Karplus, P.A.4
Poole, L.B.5
-
24
-
-
77956171017
-
Structural Evidence that Peroxiredoxin Catalytic Power Is Based on Transition-State Stabilization
-
Hall, A., Parsonage, D., Poole, L. B., and Karplus, P. A. (2010) Structural Evidence that Peroxiredoxin Catalytic Power Is Based on Transition-State Stabilization J. Mol. Biol. 402, 194-209
-
(2010)
J. Mol. Biol.
, vol.402
, pp. 194-209
-
-
Hall, A.1
Parsonage, D.2
Poole, L.B.3
Karplus, P.A.4
-
25
-
-
84866648571
-
Mapping the Active Site Helix-to-Strand Conversion of CxxxxC Peroxiredoxin Q Enzymes
-
Perkins, A., Gretes, M. C., Nelson, K. J., Poole, L. B., and Karplus, P. A. (2012) Mapping the Active Site Helix-to-Strand Conversion of CxxxxC Peroxiredoxin Q Enzymes Biochemistry 51, 7638-7650
-
(2012)
Biochemistry
, vol.51
, pp. 7638-7650
-
-
Perkins, A.1
Gretes, M.C.2
Nelson, K.J.3
Poole, L.B.4
Karplus, P.A.5
-
26
-
-
81755161507
-
Extraordinary μs - Ms Backbone Dynamics in Arabidopsis thaliana Peroxiredoxin Q
-
Ådén, J. 1814, Extraordinary μs-ms Backbone Dynamics in Arabidopsis thaliana Peroxiredoxin Q Biochim. Biophys. Acta, Proteins Proteomics 1880-1890, 2011
-
(1814)
Biochim. Biophys. Acta, Proteins Proteomics
, vol.1880-1890
, pp. 2011
-
-
Ådén, J.1
-
27
-
-
82755171868
-
Crystal Structure of Reduced and of Oxidized Peroxiredoxin IV Enzyme Reveals a Stable Oxidized Decamer and a Non-Disulfide-Bonded Intermediate in the Catalytic Cycle
-
Cao, Z., Tavender, T. J., Roszak, A. W., Cogdell, R. J., and Bulleid, N. J. (2011) Crystal Structure of Reduced and of Oxidized Peroxiredoxin IV Enzyme Reveals a Stable Oxidized Decamer and a Non-Disulfide-Bonded Intermediate in the Catalytic Cycle J. Biol. Chem. 286, 42257-42266
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 42257-42266
-
-
Cao, Z.1
Tavender, T.J.2
Roszak, A.W.3
Cogdell, R.J.4
Bulleid, N.J.5
-
28
-
-
40849136587
-
Substrate specificity and redox potential of AhpC, a bacterial peroxiredoxin
-
DOI 10.1073/pnas.0708308105
-
Parsonage, D., Karplus, P. A., and Poole, L. B. (2008) Substrate Specificity and Redox Potential of AhpC, a Bacterial Peroxiredoxin Proc. Natl. Acad. Sci. U.S.A. 105, 8209-8214 (Pubitemid 351904736)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.24
, pp. 8209-8214
-
-
Parsonage, D.1
Karplus, P.A.2
Poole, L.B.3
-
29
-
-
23244466487
-
Analysis of the link between enzymatic activity and oligomeric state in AhpC, a bacterial peroxiredoxin
-
DOI 10.1021/bi050448i
-
Parsonage, D., Youngblood, D. S., Sarma, G. N., Wood, Z. A., Karplus, P. A., and Poole, L. B. (2005) Analysis of the Link between Enzymatic Activity and Oligomeric State in AhpC, a Bacterial Peroxiredoxin Biochemistry 44, 10583-10592 (Pubitemid 41098235)
-
(2005)
Biochemistry
, vol.44
, Issue.31
, pp. 10583-10592
-
-
Parsonage, D.1
Youngblood, D.S.2
Sarma, G.N.3
Wood, Z.A.4
Karplus, P.A.5
Poole, L.B.6
-
30
-
-
31544450286
-
Construction of Escherichia coli K-12 in-Frame, Single-Gene Knockout Mutants: The Keio Collection
-
Baba, T., Ara, T., Haseqawa, M., Takai, Y., Okumura, Y., Baba, M., Datsenko, K. A., Tomita, M., Wanner, B. L., and Mori, H. (2006) Construction of Escherichia coli K-12 in-Frame, Single-Gene Knockout Mutants: the Keio Collection Mol. Syst. Biol. 2 (2006) 0008
-
(2006)
Mol. Syst. Biol.
, vol.2
, Issue.2006
, pp. 0008
-
-
Baba, T.1
Ara, T.2
Haseqawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Datsenko, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
-
31
-
-
14844294424
-
Protein Production by Auto-Induction in High-Density Shaking Cultures
-
Studier, F. W. (2005) Protein Production by Auto-Induction in High-Density Shaking Cultures Protein Expression Purif. 41, 207-234
-
(2005)
Protein Expression Purif.
, vol.41
, pp. 207-234
-
-
Studier, F.W.1
-
32
-
-
0030066091
-
Flavin-dependent alkyl hydroperoxide reductase from Salmonella typhimurium. 2. Cystine disulfides involved in catalysis of peroxide reduction
-
DOI 10.1021/bi951888k
-
Poole, L. B. (1996) Flavin-Dependent Alkyl Hydroperoxide Reductase from Salmonella typhimurium. 2. Cystine Disulfides Involved in Catalysis of Peroxide Reduction Biochemistry 35, 65-75 (Pubitemid 26036407)
-
(1996)
Biochemistry
, vol.35
, Issue.1
, pp. 65-75
-
-
Poole, L.B.1
-
33
-
-
13444265992
-
Crystal structure of a novel Plasmodium falciparum 1-Cys peroxiredoxin
-
DOI 10.1016/j.jmb.2004.12.022
-
Sarma, G. N., Nickel, C., Rahlfs, R., Fischer, M., Becker, K., and Karplus, P. A. (2005) Crystal Structure of a Novel Plasmodium falciparum 1-Cys Peroxiredoxin J. Mol. Biol. 346, 1021-1034 (Pubitemid 40215527)
-
(2005)
Journal of Molecular Biology
, vol.346
, Issue.4
, pp. 1021-1034
-
-
Sarma, G.N.1
Nickel, C.2
Rahlfs, S.3
Fischer, M.4
Becker, K.5
Karplus, P.A.6
-
34
-
-
27644509237
-
Crystal structure of an archaeal peroxiredoxin from the aerobic hyperthermophilic crenarchaeon Aeropyrum pernix K1
-
DOI 10.1016/j.jmb.2005.09.006, PII S0022283605010594
-
Mizohata, E., Sakai, H., Fusatomi, E., Terada, T., Murayama, K., Shirouzu, M., and Yokoyama, S. (2005) Crystal Structure of an Archaeal Peroxiredoxin from the Aerobic Hyperthermophilic Crenarchaeon Aeropyrum pernix K1 J. Mol. Biol. 354, 317-329 (Pubitemid 41579849)
-
(2005)
Journal of Molecular Biology
, vol.354
, Issue.2
, pp. 317-329
-
-
Mizohata, E.1
Sakai, H.2
Fusatomi, E.3
Terada, T.4
Murayama, K.5
Shirouzu, M.6
Yokoyama, S.7
-
35
-
-
79953759821
-
Imosflm: A New Graphical Interface for Diffraction-Image Processing with MOSFLM
-
Battye, T. G. G., Kontogiannis, L., Johnson, O., Powell, H. R., and Leslie, A. G. W. (2011) iMOSFLM: a New Graphical Interface for Diffraction-Image Processing with MOSFLM Acta Crystallogr., Sect. D: Biol. Crystallogr. 67, 271-281
-
(2011)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.67
, pp. 271-281
-
-
Battye, T.G.G.1
Kontogiannis, L.2
Johnson, O.3
Powell, H.R.4
Leslie, A.G.W.5
-
36
-
-
84861425552
-
Linking Crystallographic Model and Data Quality
-
Karplus, P. A. and Diederichs, K. (2012) Linking Crystallographic Model and Data Quality Science 336, 1030-1033
-
(2012)
Science
, vol.336
, pp. 1030-1033
-
-
Karplus, P.A.1
Diederichs, K.2
-
37
-
-
84881663551
-
Cysteine Dioxygenase Structures from pH 4 to 9: Consistent Cys-Persulfenate Formation at Intermediate pH and a Cys-Bound Enzyme at Higher pH
-
Driggers, C. M., Cooley, R. B., Sankaran, B., Hirschberger, L. L., Stipanuk, M. H., and Karplus, P. A. (2013) Cysteine Dioxygenase Structures from pH 4 to 9: Consistent Cys-Persulfenate Formation at Intermediate pH and a Cys-Bound Enzyme at Higher pH J. Mol. Biol. 425, 3121-3136
-
(2013)
J. Mol. Biol.
, vol.425
, pp. 3121-3136
-
-
Driggers, C.M.1
Cooley, R.B.2
Sankaran, B.3
Hirschberger, L.L.4
Stipanuk, M.H.5
Karplus, P.A.6
-
39
-
-
84860287260
-
Exploiting Structure Similarity in Refinement: Automated NCS and Target-Structure Restraints in BUSTER
-
Smart, O. S. 2012, Exploiting Structure Similarity in Refinement: Automated NCS and Target-Structure Restraints in BUSTER Acta Crystallogr., Sect. D: Biol. Crystallogr. 68, 368-380
-
(2012)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.68
, pp. 368-380
-
-
Smart, O.S.1
-
41
-
-
84860273177
-
Towards Automated Crystallographic Structure Refinement with Phenix.refine
-
Afonine, P. V. 2012, Towards Automated Crystallographic Structure Refinement with Phenix.refine Acta Crystallogr., Sect. D: Biol. Crystallogr. 68, 352-367
-
(2012)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.68
, pp. 352-367
-
-
Afonine, P.V.1
-
42
-
-
79957720837
-
Measuring Copper and Zinc Superoxide Dismutase from Spinal Cord Tissue Using Electrospray Mass Spectrometry
-
Rhoads, T. W. 2011, Measuring Copper and Zinc Superoxide Dismutase from Spinal Cord Tissue Using Electrospray Mass Spectrometry Anal. Biochem. 415, 52-58
-
(2011)
Anal. Biochem.
, vol.415
, pp. 52-58
-
-
Rhoads, T.W.1
-
43
-
-
84873025889
-
Using Theoretical Protein Isotopic Distributions to Parse Small-Mass-Difference Post-Translational Modifications via Mass Spectrometry
-
Rhoads, T. W., Williams, J. R., Lopez, N. I., Morré, J. T., Bradford, C. S., and Beckman, J. S. (2013) Using Theoretical Protein Isotopic Distributions to Parse Small-Mass-Difference Post-Translational Modifications via Mass Spectrometry J. Am. Soc. Mass Spectrom. 24, 115-124
-
(2013)
J. Am. Soc. Mass Spectrom.
, vol.24
, pp. 115-124
-
-
Rhoads, T.W.1
Williams, J.R.2
Lopez, N.I.3
Morré, J.T.4
Bradford, C.S.5
Beckman, J.S.6
-
44
-
-
84879877885
-
Evaluating Peroxiredoxin Sensitivity toward Inactivation by Peroxide Substrates
-
Nelson, K. J., Parsonage, D., Karplus, P. A., and Poole, L. B. (2013) Evaluating Peroxiredoxin Sensitivity toward Inactivation by Peroxide Substrates Methods Enzymol. 527, 21-40
-
(2013)
Methods Enzymol.
, vol.527
, pp. 21-40
-
-
Nelson, K.J.1
Parsonage, D.2
Karplus, P.A.3
Poole, L.B.4
-
45
-
-
0032817414
-
Stimulation of peroxidase activity by decamerization related to ionic strength: AhpC protein from Amphibacillus xylanus
-
Kitano, K., Niimura, Y., Nishiyama, Y., and Miki, K. (1999) Stimulation of Peroxidase Activity by Decamerization Related to Ionic Strength: AhpC Protein from Amphibacillus xylanus J. Biochem. 126, 313-319 (Pubitemid 29408198)
-
(1999)
Journal of Biochemistry
, vol.126
, Issue.2
, pp. 313-319
-
-
Kitano, K.1
Niimura, Y.2
Nishiyama, Y.3
Miki, K.4
-
46
-
-
38049177629
-
Dimer-Oligomer Interconversion of Wild-type and Mutant Rat 2-Cys Peroxiredoxin Disulfide Formation at Dimer-Dimer Interfaces is not Essential for Decamerization
-
Matsumura, T. 2008, Dimer-Oligomer Interconversion of Wild-type and Mutant Rat 2-Cys Peroxiredoxin Disulfide Formation at Dimer-Dimer Interfaces is not Essential for Decamerization J. Biol. Chem. 283, 284-293
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 284-293
-
-
Matsumura, T.1
-
47
-
-
41649103755
-
The crystal structure of the C45S mutant of annelid Arenicola marina peroxiredoxin 6 supports its assignment to the mechanistically typical 2-Cys subfamily without any formation of toroid-shaped decamers
-
DOI 10.1110/ps.073399308
-
Smeets, A., Loumaye, E., Clippe, A., Rees, J. F., Knoops, B., and Declercq, J. P. (2008) The Crystal Structure of the C45S Mutant of Annelid Arenicola marina Peroxiredoxin 6 Supports Its Assignment to the Mechanistically Typical 2-Cys Subfamily without Any Formation of Toroid-Shaped Decamers Protein Sci. 17, 700-710 (Pubitemid 351480864)
-
(2008)
Protein Science
, vol.17
, Issue.4
, pp. 700-710
-
-
Smeets, A.1
Loumaye, E.2
Clippe, A.3
Rees, J.-F.4
Knoops, B.5
Declercq, J.-P.6
-
48
-
-
70349840614
-
Structural Changes Common to Catalysis in the Tpx Peroxiredoxin Subfamily
-
Hall, A., Sankaran, B., Poole, L. B., and Karplus, P. A. (2009) Structural Changes Common to Catalysis in the Tpx Peroxiredoxin Subfamily J. Mol. Biol. 393, 867-881
-
(2009)
J. Mol. Biol.
, vol.393
, pp. 867-881
-
-
Hall, A.1
Sankaran, B.2
Poole, L.B.3
Karplus, P.A.4
-
49
-
-
33646594101
-
Structure of the Inactive Variant C60S of Mycobacterium tuberculosis Thiol Peroxidase
-
Stehr, M., Hecht, H. J., Jäger, T., Flohé, L., and Singh, M. (2006) Structure of the Inactive Variant C60S of Mycobacterium tuberculosis Thiol Peroxidase Acta Crystallogr., Sect. D: Biol. Crystallogr. 62, 563-567
-
(2006)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.62
, pp. 563-567
-
-
Stehr, M.1
Hecht, H.J.2
Jäger, T.3
Flohé, L.4
Singh, M.5
-
50
-
-
28644442411
-
Crystal structure of the C107S/C112S mutant of yeast nuclear 2-Cys peroxiredoxin
-
DOI 10.1002/prot.20704
-
Choi, J. 2005, Crystal Structure of the C107S/C112S Mutant of Yeast Nuclear 2-Cys Peroxiredoxin Proteins: Struct., Funct., Bioinf. 61, 1146-1149 (Pubitemid 41753187)
-
(2005)
Proteins: Structure, Function and Genetics
, vol.61
, Issue.4
, pp. 1146-1149
-
-
Choi, J.1
Choi, S.2
Chon, J.K.3
Choi, J.4
Cha, M.-K.5
Kim, I.-H.6
Shin, W.7
-
51
-
-
68149100376
-
Insights into the Catalytic Mechanism of the Bcp Family: Functional and Structural Analysis of Bcp1 from Sulfolobus solfataricus
-
D'Ambrosio, K., Limauro, D., Pedone, E., Galdi, I., Pedone, C., Bartolucci, S., and De Simone, G. (2009) Insights into the Catalytic Mechanism of the Bcp Family: Functional and Structural Analysis of Bcp1 from Sulfolobus solfataricus Proteins: Struct., Funct., Bioinf. 76, 995-1006
-
(2009)
Proteins: Struct., Funct., Bioinf.
, vol.76
, pp. 995-1006
-
-
D'Ambrosio, K.1
Limauro, D.2
Pedone, E.3
Galdi, I.4
Pedone, C.5
Bartolucci, S.6
De Simone, G.7
-
52
-
-
77957105568
-
Exploring the Catalytic Mechanism of the First Dimeric Bcp: Functional, Structural and Docking Analyses of Bcp4 from Sulfolobus solfataricus
-
Limauro, D., D'Ambrosio, K., Langella, E., De Simone, G., Galdi, L., Pedone, C., Pedone, E., and Bartolucci, S. (2010) Exploring the Catalytic Mechanism of the First Dimeric Bcp: Functional, Structural and Docking Analyses of Bcp4 from Sulfolobus solfataricus Biochimie 92, 1435-1444
-
(2010)
Biochimie
, vol.92
, pp. 1435-1444
-
-
Limauro, D.1
D'Ambrosio, K.2
Langella, E.3
De Simone, G.4
Galdi, L.5
Pedone, C.6
Pedone, E.7
Bartolucci, S.8
-
53
-
-
67649867930
-
Insights into the Alkyl Peroxide Reduction Pathway of Xanthomonas campestris Bacterioferritin Comigratory Protein from the Trapped Intermediate-Ligand Complex Structures
-
Liao, S. J., Yang, C.-Y., Chin, K. H., Wang, A. H. J., and Chou, S. H. (2009) Insights into the Alkyl Peroxide Reduction Pathway of Xanthomonas campestris Bacterioferritin Comigratory Protein from the Trapped Intermediate-Ligand Complex Structures J. Mol. Biol. 390, 951-966
-
(2009)
J. Mol. Biol.
, vol.390
, pp. 951-966
-
-
Liao, S.J.1
Yang, C.-Y.2
Chin, K.H.3
Wang, A.H.J.4
Chou, S.H.5
-
54
-
-
57649155172
-
Structural Basis for a Distinct Catalytic Mechanism in Trypanosoma brucei Tryparedoxin Peroxidase
-
Melchers, J., Diechtierow, M., Feher, K., Sinning, I., Tews, I., Krauth-Siegel, R. L., and Muhle-Goll, C. (2008) Structural Basis for a Distinct Catalytic Mechanism in Trypanosoma brucei Tryparedoxin Peroxidase J. Biol. Chem. 283, 30401-30411
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 30401-30411
-
-
Melchers, J.1
Diechtierow, M.2
Feher, K.3
Sinning, I.4
Tews, I.5
Krauth-Siegel, R.L.6
Muhle-Goll, C.7
-
55
-
-
76749136135
-
The Conserved Cys76 Plays a Crucial Role for the Conformation of Reduced Glutathione Peroxidase-Type Tryparedoxin Peroxidase
-
Muhle-Goll, C., Füller, F., Ulrich, A. S., and Krauth-Siegel, R. L. (2010) The Conserved Cys76 Plays a Crucial Role for the Conformation of Reduced Glutathione Peroxidase-Type Tryparedoxin Peroxidase FEBS Lett. 584, 1027-1032
-
(2010)
FEBS Lett.
, vol.584
, pp. 1027-1032
-
-
Muhle-Goll, C.1
Füller, F.2
Ulrich, A.S.3
Krauth-Siegel, R.L.4
-
56
-
-
75649122929
-
Crystal Structure of Peroxiredoxin from Aeropyrum pernix K1 Complexed with its Substrate, Hydrogen Peroxide
-
Nakamura, T., Kado, Y., Yamaquchi, T., Matsumara, H., Ishikawa, K., and Inoue, T. (2010) Crystal Structure of Peroxiredoxin from Aeropyrum pernix K1 Complexed with its Substrate, Hydrogen Peroxide J. Biochem. 147, 109-115
-
(2010)
J. Biochem.
, vol.147
, pp. 109-115
-
-
Nakamura, T.1
Kado, Y.2
Yamaquchi, T.3
Matsumara, H.4
Ishikawa, K.5
Inoue, T.6
-
57
-
-
66249145702
-
Geometric Characteristics of Hydrogen Bonds Involving Sulfur Atoms in Proteins
-
Zhou, P., Tian, F., Lv, F., and Shang, Z. (2009) Geometric Characteristics of Hydrogen Bonds Involving Sulfur Atoms in Proteins Proteins: Struct., Funct., Bioinf. 76, 151-163
-
(2009)
Proteins: Struct., Funct., Bioinf.
, vol.76
, pp. 151-163
-
-
Zhou, P.1
Tian, F.2
Lv, F.3
Shang, Z.4
-
58
-
-
0029979565
-
Directionality of hydrogen bonds to sulfur and oxygen
-
DOI 10.1021/ja952871s
-
Platts, J. A., Howard, S. T., and Bracke, B. R. F. (1996) Directionality of Hydrogen Bonds to Sulfur and Oxygen J. Am. Chem. Soc. 118, 2726-2733 (Pubitemid 26128057)
-
(1996)
Journal of the American Chemical Society
, vol.118
, Issue.11
, pp. 2726-2733
-
-
Platts, J.A.1
Howard, S.T.2
Bracke, B.R.F.3
-
60
-
-
79954630749
-
Conformational Studies of the Robust 2-Cys Peroxiredoxin Salmonella typhimurium AhpC by Solution Phase Hydrogen/Deuterium (H/D) Exchange Monitored by Electrospray Ionization Mass Spectrometry
-
Nirudodhi, S., Parsonage, D., Karplus, P. A., Poole, L. B., and Maier, C. S. (2011) Conformational Studies of the Robust 2-Cys Peroxiredoxin Salmonella typhimurium AhpC by Solution Phase Hydrogen/Deuterium (H/D) Exchange Monitored by Electrospray Ionization Mass Spectrometry Int. J. Mass Spectr. 302, 93-100
-
(2011)
Int. J. Mass Spectr.
, vol.302
, pp. 93-100
-
-
Nirudodhi, S.1
Parsonage, D.2
Karplus, P.A.3
Poole, L.B.4
Maier, C.S.5
-
61
-
-
12144288174
-
Conserved Cysteine 126 in Triosephosphate Isomerase Is Required Not for Enzymatic Activity but for Proper Folding and Stability
-
DOI 10.1021/bi036077s
-
González-Mondragón, E., Zubillaga, R. A., Saavedra, E., Chanez-Cardenas, M. E., Perez-Montfort, R., and Hernandez-Arana, A. (2004) Conserved Cysteine 126 in Triosephosphate Isomerase Is Required Not for Enzymatic Activity but for Proper Folding and Stability Biochemistry 43, 3255-3263 (Pubitemid 38352275)
-
(2004)
Biochemistry
, vol.43
, Issue.11
, pp. 3255-3263
-
-
Gonzalez-Mondragon, E.1
Zubillaga, R.A.2
Saavedra, E.3
Chanez-Cardenas, M.E.4
Perez-Montfort, R.5
Hernandez-Arana, A.6
-
62
-
-
2942532835
-
Biochemical characterization of 2-cys peroxiredoxins from Schistosoma mansoni
-
DOI 10.1074/jbc.M401748200
-
Sayed, A. A. and Williams, D. L. (2004) Biochemical Characterization of 2-Cys Peroxiredoxins from Schistosoma mansoni J. Biol. Chem. 279, 26159-26166 (Pubitemid 38798761)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.25
, pp. 26159-26166
-
-
Sayed, A.A.1
Williams, D.L.2
-
63
-
-
0037082137
-
Regulation of thioredoxin peroxidase activity by C-terminal truncation
-
DOI 10.1006/abbi.2001.2700
-
Koo, K. H. 2002, Regulation of Thioredoxin Peroxidase Activity by C-terminal Truncation Arch. Biochem. Biophys. 397, 312-318 (Pubitemid 34852297)
-
(2002)
Archives of Biochemistry and Biophysics
, vol.397
, Issue.2
, pp. 312-318
-
-
Koo, K.H.1
Lee, S.2
Jeong, S.Y.3
Kim, E.T.4
Kim, H.J.5
Kim, K.6
Song, K.7
Chae, H.Z.8
-
64
-
-
84877620952
-
Targeted Inhibition of Mutant IDH2 in Leukemia Cells Induces Cellular Differentiation
-
Wang, F. 2013, Targeted Inhibition of Mutant IDH2 in Leukemia Cells Induces Cellular Differentiation Science 340, 622-626
-
(2013)
Science
, vol.340
, pp. 622-626
-
-
Wang, F.1
-
65
-
-
34547441421
-
Sulfiredoxin, the Cysteine Sulfinic Acid Reductase Specific to 2-Cys Peroxiredoxin: Its Discovery, Mechanism of Action, and Biological Significance
-
Rhee, S. G., Jeong, W., Chang, T. S., and Woo, H. A. (2007) Sulfiredoxin, the Cysteine Sulfinic Acid Reductase Specific to 2-Cys Peroxiredoxin: Its Discovery, Mechanism of Action, And Biological Significance Kidney Int. 72, S3-S8
-
(2007)
Kidney Int.
, vol.72
-
-
Rhee, S.G.1
Jeong, W.2
Chang, T.S.3
Woo, H.A.4
-
66
-
-
3242886389
-
Molprobity: Structure Validation and All-Atom Contact Analysis for Nucleic Acids and Their Complexes
-
Davis, I. W., Murray, L. W., Richardson, J. S., and Richardson, D. C. (2004) MOLPROBITY: Structure Validation and All-Atom Contact Analysis for Nucleic Acids and Their Complexes Nucleic Acids Res. 32, W615-W619
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Davis, I.W.1
Murray, L.W.2
Richardson, J.S.3
Richardson, D.C.4
-
67
-
-
77957920876
-
Metals in Protein Structures: A Review of Their Principal Features
-
Harding, M. M., Nowicki, M. W., and Walkinshaw, M. D. (2010) Metals in Protein Structures: A Review of Their Principal Features Crystallogr. Rev. 16, 247-302
-
(2010)
Crystallogr. Rev.
, vol.16
, pp. 247-302
-
-
Harding, M.M.1
Nowicki, M.W.2
Walkinshaw, M.D.3
-
68
-
-
0032922193
-
SFCHECK: A unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model
-
Vaguine, A. A., Richelle, J., and Wodak, S. J. (1999) SFCHECK: a Unified Set of Procedures for Evaluating the Quality of Macromolecular Structure-Factor Data and Their Agreement with the Atomic Model Acta Crystallogr., Sect. D: Biol. Crystallogr. 55, 191-205 (Pubitemid 29053816)
-
(1999)
Acta Crystallographica Section D: Biological Crystallography
, vol.55
, Issue.1
, pp. 191-205
-
-
Vaguine, A.A.1
Richelle, J.2
Wodak, S.J.3
|