-
1
-
-
0242608621
-
Pathways of oxidative damage
-
Imlay J.A. Pathways of oxidative damage. Annu. Rev. Microbiol. 2003, 57:395-418.
-
(2003)
Annu. Rev. Microbiol.
, vol.57
, pp. 395-418
-
-
Imlay, J.A.1
-
2
-
-
38749094500
-
The catalytic mechanism of peroxiredoxins
-
Poole L.B. The catalytic mechanism of peroxiredoxins. Subcell. Biochem. 2007, 44:61-68.
-
(2007)
Subcell. Biochem.
, vol.44
, pp. 61-68
-
-
Poole, L.B.1
-
3
-
-
0037222255
-
Structure, mechanisms and regulation of peroxiredoxins
-
Wood Z.A., Schröder E., Harris J.R., Poole L.B. Structure, mechanisms and regulation of peroxiredoxins. Trends Biochem. Sci. 2003, 28:32-40.
-
(2003)
Trends Biochem. Sci.
, vol.28
, pp. 32-40
-
-
Wood, Z.A.1
Schröder, E.2
Harris, J.R.3
Poole, L.B.4
-
4
-
-
4544345529
-
Free radicals in cell biology
-
Djordjević V.B. Free radicals in cell biology. Int. Rev. Cytol. 2004, 237:57-89.
-
(2004)
Int. Rev. Cytol.
, vol.237
, pp. 57-89
-
-
Djordjević, V.B.1
-
5
-
-
0034648827
-
Peroxynitrite reductase activity of bacterial peroxiredoxins
-
Bryk R., Griffin P., Nathan C. Peroxynitrite reductase activity of bacterial peroxiredoxins. Nature 2000, 407:211-215.
-
(2000)
Nature
, vol.407
, pp. 211-215
-
-
Bryk, R.1
Griffin, P.2
Nathan, C.3
-
6
-
-
48449107159
-
Thiol chemistry and specificity in redox signaling
-
Winterbourn C.C., Hampton M.B. Thiol chemistry and specificity in redox signaling. Free Radic. Biol. Med. 2008, 45:549-561.
-
(2008)
Free Radic. Biol. Med.
, vol.45
, pp. 549-561
-
-
Winterbourn, C.C.1
Hampton, M.B.2
-
7
-
-
0042568938
-
Essential role for the peroxiredoxin Prdx1 in erythrocyte antioxidant defence and tumour suppression
-
Neumann C.A., Krause D.S., Carman C.V., Das S., Dubey D.P., Abraham J.L., Bronson R.T., Fujiwara Y., Orkin S.H., Van Etten R.A. Essential role for the peroxiredoxin Prdx1 in erythrocyte antioxidant defence and tumour suppression. Nature 2003, 424:561-565.
-
(2003)
Nature
, vol.424
, pp. 561-565
-
-
Neumann, C.A.1
Krause, D.S.2
Carman, C.V.3
Das, S.4
Dubey, D.P.5
Abraham, J.L.6
Bronson, R.T.7
Fujiwara, Y.8
Orkin, S.H.9
Van Etten, R.A.10
-
8
-
-
0242668686
-
Peroxiredoxin evolution and the regulation of hydrogen peroxide signalling
-
Wood Z.A., Poole L.B., Karplus P.A. Peroxiredoxin evolution and the regulation of hydrogen peroxide signalling. Science 2003, 300:592-594.
-
(2003)
Science
, vol.300
, pp. 592-594
-
-
Wood, Z.A.1
Poole, L.B.2
Karplus, P.A.3
-
9
-
-
33644960586
-
Identification and characterization of 1-Cys peroxiredoxin from Sulfolobus solfataricus and its involvement in the response to oxidative stress
-
Limauro D., Pedone E., Pirone L., Bartolucci S. Identification and characterization of 1-Cys peroxiredoxin from Sulfolobus solfataricus and its involvement in the response to oxidative stress. FEBS J. 2006, 273:721-731.
-
(2006)
FEBS J.
, vol.273
, pp. 721-731
-
-
Limauro, D.1
Pedone, E.2
Pirone, L.3
Bartolucci, S.4
-
10
-
-
42449109092
-
Peroxiredoxins as cellular guardians in Sulfolobus solfataricus - characterization of Bcp1, Bcp3 and Bcp4
-
Limauro D., Pedone E., Galdi I., Bartolucci S. Peroxiredoxins as cellular guardians in Sulfolobus solfataricus - characterization of Bcp1, Bcp3 and Bcp4. FEBS J. 2008, 275:2067-2077.
-
(2008)
FEBS J.
, vol.275
, pp. 2067-2077
-
-
Limauro, D.1
Pedone, E.2
Galdi, I.3
Bartolucci, S.4
-
11
-
-
38749134528
-
Peroxiredoxin systems of protozoal parasites
-
Deponte M., Rahlfs S., Becker K. Peroxiredoxin systems of protozoal parasites. Subcell. Biochem. 2007, 44:219-429.
-
(2007)
Subcell. Biochem.
, vol.44
, pp. 219-429
-
-
Deponte, M.1
Rahlfs, S.2
Becker, K.3
-
12
-
-
19644394554
-
Regulation of PDGF- signaling and vascular remodeling by peroxiredoxin II
-
Choi M.H., Lee I.K., Kim G.W., Kim B.U., Han Y.H., Yu D.Y., Park H.S., Kim K.Y., Lee J.S., Choi C., Bae Y.S., Lee B.I., Rhee S.G., Kang S.W. Regulation of PDGF- signaling and vascular remodeling by peroxiredoxin II. Nature 2005, 435:47-353.
-
(2005)
Nature
, vol.435
, pp. 47-353
-
-
Choi, M.H.1
Lee, I.K.2
Kim, G.W.3
Kim, B.U.4
Han, Y.H.5
Yu, D.Y.6
Park, H.S.7
Kim, K.Y.8
Lee, J.S.9
Choi, C.10
Bae, Y.S.11
Lee, B.I.12
Rhee, S.G.13
Kang, S.W.14
-
13
-
-
34247250399
-
Four thiol peroxidases contain a conserved GCT catalytic motif and act as a versatile array of lipid peroxidases in Anabaena sp. PCC7120
-
Cha M.K., Hong S.K., Kim I.H. Four thiol peroxidases contain a conserved GCT catalytic motif and act as a versatile array of lipid peroxidases in Anabaena sp. PCC7120. Free Radic. Biol. Med. 2007, 42:1736-1748.
-
(2007)
Free Radic. Biol. Med.
, vol.42
, pp. 1736-1748
-
-
Cha, M.K.1
Hong, S.K.2
Kim, I.H.3
-
14
-
-
66149133646
-
Interrogating the molecular details of the peroxiredoxin activity of the Escherichia coli bacterioferritin comigratory protein using high-resolution mass spectrometry
-
Clarke D.J., Mackay C.L., Campopiano D.J., Langridge-Smith P., Brown A.R. Interrogating the molecular details of the peroxiredoxin activity of the Escherichia coli bacterioferritin comigratory protein using high-resolution mass spectrometry. Biochemistry 2009, 48:3904-3914.
-
(2009)
Biochemistry
, vol.48
, pp. 3904-3914
-
-
Clarke, D.J.1
Mackay, C.L.2
Campopiano, D.J.3
Langridge-Smith, P.4
Brown, A.R.5
-
15
-
-
33746896639
-
Functional and structural characterization of a thiol peroxidase from Mycobacterium tuberculosis
-
Rho B.S., Hung L.W., Holton J.M., Vigil D., Kim S.I., Park M.S., Terwilliger T.C., Pedelacq J.D. Functional and structural characterization of a thiol peroxidase from Mycobacterium tuberculosis. J. Mol. Biol. 2006, 361:850-863.
-
(2006)
J. Mol. Biol.
, vol.361
, pp. 850-863
-
-
Rho, B.S.1
Hung, L.W.2
Holton, J.M.3
Vigil, D.4
Kim, S.I.5
Park, M.S.6
Terwilliger, T.C.7
Pedelacq, J.D.8
-
16
-
-
0038267063
-
Characterization of novel hexadecameric thioredoxin peroxidase from Aeropyrum pernix K1
-
Jeon S.J., Ishikawa K. Characterization of novel hexadecameric thioredoxin peroxidase from Aeropyrum pernix K1. J. Biol. Chem. 2003, 278:24174-24180.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 24174-24180
-
-
Jeon, S.J.1
Ishikawa, K.2
-
17
-
-
68149100376
-
Insights into the catalytic mechanism of the bcp family: functional and structural analysis of Bcp1 from Sulfolobus solfataricus
-
D'Ambrosio K., Limauro D., Pedone E., Galdi I., Pedone C., Bartolucci S., De Simone G. Insights into the catalytic mechanism of the bcp family: functional and structural analysis of Bcp1 from Sulfolobus solfataricus. Proteins 2009, 76:95-1006.
-
(2009)
Proteins
, vol.76
, pp. 95-1006
-
-
D'Ambrosio, K.1
Limauro, D.2
Pedone, E.3
Galdi, I.4
Pedone, C.5
Bartolucci, S.6
De Simone, G.7
-
18
-
-
0034723165
-
Thioredoxin-dependent hydroperoxide peroxidase activity of bacterioferritin comigratory protein (BCP) as a new member of the thiol-specific antioxidant protein (TSA)/Alkyl hydroperoxide peroxidase C (AhpC) family
-
Jeong W., Cha M.K., Kim I.H. Thioredoxin-dependent hydroperoxide peroxidase activity of bacterioferritin comigratory protein (BCP) as a new member of the thiol-specific antioxidant protein (TSA)/Alkyl hydroperoxide peroxidase C (AhpC) family. J. Biol. Chem. 2000, 275:2924-2930.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 2924-2930
-
-
Jeong, W.1
Cha, M.K.2
Kim, I.H.3
-
19
-
-
12144287638
-
Poplar peroxiredoxin Q. A thioredoxin-linked chloroplast antioxidant functional in pathogen defense
-
Rouhier N., Gelhaye E., Gualberto J.M., Jordy M.N., De Fay E., Hirasawa M., Duplessis S., Lemaire S.D., Frey P., Martin F., Manieri W., Knaff D.B., Jacquot J.P. Poplar peroxiredoxin Q. A thioredoxin-linked chloroplast antioxidant functional in pathogen defense. Plant Physiol 2004, 134:1027-1038.
-
(2004)
Plant Physiol
, vol.134
, pp. 1027-1038
-
-
Rouhier, N.1
Gelhaye, E.2
Gualberto, J.M.3
Jordy, M.N.4
De Fay, E.5
Hirasawa, M.6
Duplessis, S.7
Lemaire, S.D.8
Frey, P.9
Martin, F.10
Manieri, W.11
Knaff, D.B.12
Jacquot, J.P.13
-
20
-
-
28644442411
-
Crystal structure of the C107S/C112S mutant of yeast nuclear 2-Cys peroxiredoxin
-
Choi J., Choi S., Chon J.K., Choi J., Cha M.K., Kim I.H., Shin W. Crystal structure of the C107S/C112S mutant of yeast nuclear 2-Cys peroxiredoxin. Proteins 2005, 61:1146-1149.
-
(2005)
Proteins
, vol.61
, pp. 1146-1149
-
-
Choi, J.1
Choi, S.2
Chon, J.K.3
Choi, J.4
Cha, M.K.5
Kim, I.H.6
Shin, W.7
-
21
-
-
34948837440
-
The significance of type II and PrxQ peroxiredoxins for antioxidative stress response in the purple bacterium Rhodobacter sphaeroides
-
Wakita M., Masuda S., Motohashi K., Hisabori T., Ohta H., Takamiya K. The significance of type II and PrxQ peroxiredoxins for antioxidative stress response in the purple bacterium Rhodobacter sphaeroides. J. Biol. Chem. 2007, 282:27792-27801.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 27792-27801
-
-
Wakita, M.1
Masuda, S.2
Motohashi, K.3
Hisabori, T.4
Ohta, H.5
Takamiya, K.6
-
22
-
-
58149098332
-
Sulfolobus solfataricus protein disulphide oxidoreductase: insight into the roles of its redox sites
-
Limauro D., Saviano M., Galdi I., Rossi M., Bartolucci S., Pedone E. Sulfolobus solfataricus protein disulphide oxidoreductase: insight into the roles of its redox sites. Protein Eng. Des. Sel. 2009, 22:19-26.
-
(2009)
Protein Eng. Des. Sel.
, vol.22
, pp. 19-26
-
-
Limauro, D.1
Saviano, M.2
Galdi, I.3
Rossi, M.4
Bartolucci, S.5
Pedone, E.6
-
23
-
-
0025272639
-
Current approaches to macromolecular crystallization
-
McPherson A. Current approaches to macromolecular crystallization. Eur. J. Biochem. 1990, 189:1-23.
-
(1990)
Eur. J. Biochem.
, vol.189
, pp. 1-23
-
-
McPherson, A.1
-
24
-
-
0003087471
-
Screening and optimization strategies for macromolecular crystal growth
-
Cudney R., Patel S., Weisgraber K., Newhouse Y., McPherson A. Screening and optimization strategies for macromolecular crystal growth. Acta Crystallogr. Sect. D 1994, 50:414-423.
-
(1994)
Acta Crystallogr. Sect. D
, vol.50
, pp. 414-423
-
-
Cudney, R.1
Patel, S.2
Weisgraber, K.3
Newhouse, Y.4
McPherson, A.5
-
25
-
-
0026206788
-
Sparse matrix sampling: a screening method for crystallisation of proteins
-
Jancarik J., Kim S.H. Sparse matrix sampling: a screening method for crystallisation of proteins. J. Appl. Cryst. 1991, 24:409-411.
-
(1991)
J. Appl. Cryst.
, vol.24
, pp. 409-411
-
-
Jancarik, J.1
Kim, S.H.2
-
26
-
-
0031059866
-
Processing of X-Ray diffraction data collected in oscillation mode
-
Otwinowsky Z., Minor W. Processing of X-Ray diffraction data collected in oscillation mode. Meth. Enzymol. 1997, 276:307-326.
-
(1997)
Meth. Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowsky, Z.1
Minor, W.2
-
27
-
-
3543012707
-
Crystallography and NMR system (CNS): a new software system for macromolecular structure determination
-
Brünger A.T., Adams P.D., Clore G.M., DeLano W.L., Gros P., Grosse-Kunsteleve R.W., Jiang J.S., Kuszewski J., Nilges M., Pannu N.S., Read R.J., Rice L.M., Simonson T., Warren G.L. Crystallography and NMR system (CNS): a new software system for macromolecular structure determination. Acta Crystallogr. Sect. D 1998, 54:905-921.
-
(1998)
Acta Crystallogr. Sect. D
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunsteleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
28
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones T.A., Zou J.Y., Cowan S.W., Kjeldgaard M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. Sect. A 1991, 47:110-119.
-
(1991)
Acta Crystallogr. Sect. A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
29
-
-
33748331151
-
A novel member of the protein disulfide oxidoreductase family from Aeropyrum pernix K1: structure, function and electrostatics
-
D'Ambrosio K., Pedone E., Langella E., De Simone G., Rossi M., Pedone C., Bartolucci S. A novel member of the protein disulfide oxidoreductase family from Aeropyrum pernix K1: structure, function and electrostatics. J. Mol. Biol. 2006, 362:743-752.
-
(2006)
J. Mol. Biol.
, vol.362
, pp. 743-752
-
-
D'Ambrosio, K.1
Pedone, E.2
Langella, E.3
De Simone, G.4
Rossi, M.5
Pedone, C.6
Bartolucci, S.7
-
30
-
-
0042622380
-
SWISS-MODEL: an automated protein homology-modeling server
-
Schwede T., Kopp J., Guex N., Peitsch M.C. SWISS-MODEL: an automated protein homology-modeling server. Nucleic Acids Res 2003, 31:3381-3385.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3381-3385
-
-
Schwede, T.1
Kopp, J.2
Guex, N.3
Peitsch, M.C.4
-
31
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul S.F., Madden T.L., Schäffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
32
-
-
0038526303
-
ZDOCK: an initial-stage protein-docking algorithm
-
Chen R., Li L., Weng Z. ZDOCK: an initial-stage protein-docking algorithm. Proteins 2003, 52:80-87.
-
(2003)
Proteins
, vol.52
, pp. 80-87
-
-
Chen, R.1
Li, L.2
Weng, Z.3
-
33
-
-
0029881007
-
MOLMOL: a program for display and analysis of macromolecular structures
-
Koradi R., Billeter M., Wüthrich K. MOLMOL: a program for display and analysis of macromolecular structures. J. Mol. Graph. 1996, 14:51-55.
-
(1996)
J. Mol. Graph.
, vol.14
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wüthrich, K.3
-
34
-
-
59549088662
-
ProtorP: a protein-protein interaction analysis server
-
Reynolds C., Damerell D., Jones S. ProtorP: a protein-protein interaction analysis server. Bioinformatics 2009, 25:413-414.
-
(2009)
Bioinformatics
, vol.25
, pp. 413-414
-
-
Reynolds, C.1
Damerell, D.2
Jones, S.3
-
35
-
-
0000243829
-
PROCHECK: a program to check the stereochemical quality of protein structures
-
Laskowsky R.A., MacArthur M.W., Moss D.S., Thornton J.M. PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Cryst. 1993, 26:283-329.
-
(1993)
J. Appl. Cryst.
, vol.26
, pp. 283-329
-
-
Laskowsky, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
36
-
-
0031945918
-
Crystal structure of a novel human peroxidase enzyme at 2.0 Å resolution
-
Choi H.J., Kang S.W., Yang C.H., Rhee S.G., Ryu S.E. Crystal structure of a novel human peroxidase enzyme at 2.0 Å resolution. Nat. Struct. Biol. 1998, 5:400-406.
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 400-406
-
-
Choi, H.J.1
Kang, S.W.2
Yang, C.H.3
Rhee, S.G.4
Ryu, S.E.5
-
37
-
-
0035943382
-
Crystal structure of human peroxiredoxin 5, a novel type of Mammalian peroxiredoxin at 1.5 Å resolution
-
Declercq J.P., Evrard C., Clippe A., Vander Stricht D., Bernard A., Knoops B. Crystal structure of human peroxiredoxin 5, a novel type of Mammalian peroxiredoxin at 1.5 Å resolution. J. Mol. Biol. 2001, 311:751-759.
-
(2001)
J. Mol. Biol.
, vol.311
, pp. 751-759
-
-
Declercq, J.P.1
Evrard, C.2
Clippe, A.3
Vander Stricht, D.4
Bernard, A.5
Knoops, B.6
-
38
-
-
0033607229
-
Crystal structure of a multifunctional 2-Cys peroxiredoxin heme-binding protein23kDa/proliferation associated gene product
-
Hirotsu S., Abe Y., Okada K., Nagahara N., Hori H., Nishino T.S., Hakoshima T. Crystal structure of a multifunctional 2-Cys peroxiredoxin heme-binding protein23kDa/proliferation associated gene product. Proc. Natl. Acad. Sci. USA 1999, 96:12333-12338.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 12333-12338
-
-
Hirotsu, S.1
Abe, Y.2
Okada, K.3
Nagahara, N.4
Hori, H.5
Nishino, T.S.6
Hakoshima, T.7
-
39
-
-
13444260861
-
Crystal structure of AhpE from Mycobacterium tuberculosis, a 1-Cys peroxiredoxin
-
Li S., Peterson N.A., Kim M.Y., Kim C.Y., Hung L.W., Yu M., Lekin T., Segelke B.W., Lott J.S., Baker E.N. Crystal structure of AhpE from Mycobacterium tuberculosis, a 1-Cys peroxiredoxin. J. Mol. Biol. 2005, 346:1035-1046.
-
(2005)
J. Mol. Biol.
, vol.346
, pp. 1035-1046
-
-
Li, S.1
Peterson, N.A.2
Kim, M.Y.3
Kim, C.Y.4
Hung, L.W.5
Yu, M.6
Lekin, T.7
Segelke, B.W.8
Lott, J.S.9
Baker, E.N.10
-
40
-
-
13444265992
-
Crystal structure of a novel Plasmodium falciparum 1-Cys peroxiredoxin
-
Sarma G.N., Nickel C., Rahlfs S., Fischer M., Becker K., Karplus P.A. Crystal structure of a novel Plasmodium falciparum 1-Cys peroxiredoxin. J. Mol. Biol. 2005, 346:1021-1034.
-
(2005)
J. Mol. Biol.
, vol.346
, pp. 1021-1034
-
-
Sarma, G.N.1
Nickel, C.2
Rahlfs, S.3
Fischer, M.4
Becker, K.5
Karplus, P.A.6
-
41
-
-
0037197672
-
Dimers to doughnuts: redox-sensitive oligomerization of 2-cysteine peroxiredoxins
-
Wood Z.A., Poole L.B., Hantgan R.R., Karplus P.A. Dimers to doughnuts: redox-sensitive oligomerization of 2-cysteine peroxiredoxins. Biochemistry 2002, 41:5493-5504.
-
(2002)
Biochemistry
, vol.41
, pp. 5493-5504
-
-
Wood, Z.A.1
Poole, L.B.2
Hantgan, R.R.3
Karplus, P.A.4
-
42
-
-
34250346950
-
Crystal structures of a poplar thioredoxin peroxidase that exhibits the structure of glutathione peroxidases: insights into redox-driven conformational changes
-
Koh C.S., Didierjean C., Navrot N., Panjikar S., Mulliert G., Rouhier N., Jacquot J.P., Aubry A., Shawkataly O., Corbier C. Crystal structures of a poplar thioredoxin peroxidase that exhibits the structure of glutathione peroxidases: insights into redox-driven conformational changes. J. Mol. Biol. 2007, 370:512-529.
-
(2007)
J. Mol. Biol.
, vol.370
, pp. 512-529
-
-
Koh, C.S.1
Didierjean, C.2
Navrot, N.3
Panjikar, S.4
Mulliert, G.5
Rouhier, N.6
Jacquot, J.P.7
Aubry, A.8
Shawkataly, O.9
Corbier, C.10
|