메뉴 건너뛰기




Volumn 4, Issue , 2013, Pages

Genome-wide mapping of gene-microbiota interactions in susceptibility to autoimmune skin blistering

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

EID: 84888869315     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms3462     Document Type: Article
Times cited : (82)

References (42)
  • 1
    • 79956293726 scopus 로고    scopus 로고
    • Skin microbiota: Microbial community structure and its potential association with health and disease
    • Rosenthal, M., Goldberg, D., Aiello, A., Larson, E. & Foxman, B. Skin microbiota: microbial community structure and its potential association with health and disease. Infect. Genet. Evol. 11, 839-848 (2011).
    • (2011) Infect. Genet. Evol. , vol.11 , pp. 839-848
    • Rosenthal, M.1    Goldberg, D.2    Aiello, A.3    Larson, E.4    Foxman, B.5
  • 2
    • 72949091232 scopus 로고    scopus 로고
    • Bacterial community variation in human body habitats across space and time
    • Costello, E. K. et al. Bacterial community variation in human body habitats across space and time. Science 326, 1694-1697 (2009).
    • (2009) Science , vol.326 , pp. 1694-1697
    • Costello, E.K.1
  • 3
    • 78449296237 scopus 로고    scopus 로고
    • Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors
    • Benson, A. K. et al. Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors. Proc. Natl Acad. Sci. USA 107, 18933-18938 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 18933-18938
    • Benson, A.K.1
  • 4
    • 84862491799 scopus 로고    scopus 로고
    • Murine gut microbiota is defined by host genetics and modulates variation of metabolic traits
    • McKnite, A. M. et al. Murine gut microbiota is defined by host genetics and modulates variation of metabolic traits. PLoS One 7, e39191 (2012).
    • (2012) PLoS One , vol.7
    • McKnite, A.M.1
  • 5
    • 1842422281 scopus 로고    scopus 로고
    • The genetics of psoriasis, psoriatic arthritis and atopic dermatitis
    • Bowcock, A. M. & Cookson, W. O. C. M. The genetics of psoriasis, psoriatic arthritis and atopic dermatitis. Hum. Mol. Genet. 13 Spec No 1, R43-R55 (2004).
    • (2004) Hum. Mol. Genet. , vol.13 , Issue.SPEC NO 1
    • Bowcock, A.M.1    Cookson, W.O.C.M.2
  • 6
    • 84863011000 scopus 로고    scopus 로고
    • Epidermolysis bullosa acquisita: Autoimmunity to anchoring fibril collagen
    • Chen, M., Kim, G. H., Prakash, L. & Woodley, D. T. Epidermolysis bullosa acquisita: autoimmunity to anchoring fibril collagen. Autoimmunity 45, 91-101 (2012).
    • (2012) Autoimmunity , vol.45 , pp. 91-101
    • Chen, M.1    Kim, G.H.2    Prakash, L.3    Woodley, D.T.4
  • 7
    • 84859776760 scopus 로고    scopus 로고
    • Identification of quantitative trait Loci in experimental epidermolysis bullosa acquisita
    • Ludwig, R. J. et al. Identification of quantitative trait Loci in experimental epidermolysis bullosa acquisita. J. Invest. Dermatol. 132, 1409-1415 (2012).
    • (2012) J. Invest. Dermatol. , vol.132 , pp. 1409-1415
    • Ludwig, R.J.1
  • 8
    • 77958567994 scopus 로고    scopus 로고
    • Autoimmunity against type VII collagen in inflammatory bowel disease
    • Hundorfean, G., Neurath, M. F. & Sitaru, C. Autoimmunity against type VII collagen in inflammatory bowel disease. J. Cell Mol. Med. 14, 2393-2403 (2010).
    • (2010) J. Cell Mol. Med. , vol.14 , pp. 2393-2403
    • Hundorfean, G.1    Neurath, M.F.2    Sitaru, C.3
  • 10
    • 46449124442 scopus 로고    scopus 로고
    • A diversity profile of the human skin microbiota
    • Grice, E. A. et al. A diversity profile of the human skin microbiota. Genome Res. 18, 1043-1050 (2008).
    • (2008) Genome Res. , vol.18 , pp. 1043-1050
    • Grice, E.A.1
  • 11
    • 33847305053 scopus 로고    scopus 로고
    • Molecular analysis of human forearm superficial skin bacterial biota
    • Gao, Z., Tseng, C., Pei, Z. & Blaser, M. J. Molecular analysis of human forearm superficial skin bacterial biota. Proc. Natl Acad. Sci. USA 104, 2927-2932 (2007).
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 2927-2932
    • Gao, Z.1    Tseng, C.2    Pei, Z.3    Blaser, M.J.4
  • 12
    • 56649124715 scopus 로고    scopus 로고
    • The influence of sex, handedness, and washing on the diversity of hand surface bacteria
    • Fierer, N., Hamady, M., Lauber, C. L. & Knight, R. The influence of sex, handedness, and washing on the diversity of hand surface bacteria. Proc. Natl Acad. Sci. USA 105, 17994-17999 (2008).
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 17994-17999
    • Fierer, N.1    Hamady, M.2    Lauber, C.L.3    Knight, R.4
  • 13
    • 34047251829 scopus 로고    scopus 로고
    • Phylogenetic diversity (PD) and biodiversity conservation: Some bioinformatics challenges
    • Faith, D. P. & Baker, A. M. Phylogenetic diversity (PD) and biodiversity conservation: some bioinformatics challenges. Evol. Bioinform. 2, 121-128 (2006).
    • (2006) Evol. Bioinform. , vol.2 , pp. 121-128
    • Faith, D.P.1    Baker, A.M.2
  • 14
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: A new phylogenetic method for comparing microbial communities
    • Lozupone, C. & Knight, R. UniFrac: a new phylogenetic method for comparing microbial communities. Appl. Environ. Microbiol. 71, 8228-8235 (2005).
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 15
    • 73449128271 scopus 로고    scopus 로고
    • Fast UniFrac: Facilitating highthroughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
    • Hamady, M., Lozupone, C. & Knight, R. Fast UniFrac: facilitating highthroughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data. ISME J. 4, 17-27 (2010).
    • (2010) ISME J. , vol.4 , pp. 17-27
    • Hamady, M.1    Lozupone, C.2    Knight, R.3
  • 16
    • 0032944437 scopus 로고    scopus 로고
    • Statistical methods for mapping quantitative trait loci from a dense set of markers
    • Dupuis, J. & Siegmund, D. Statistical methods for mapping quantitative trait loci from a dense set of markers. Genetics 151, 373-386 (1999).
    • (1999) Genetics , vol.151 , pp. 373-386
    • Dupuis, J.1    Siegmund, D.2
  • 17
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y. & Hochberg, Y. Controlling the false discovery rate: A practical and powerful approach to multiple testing. J. R Statis. Soc. Ser. B 57, 289-289 (1995).
    • (1995) J. R Statis. Soc. Ser. B , vol.57 , pp. 289-289
    • Benjamini, Y.1    Hochberg, Y.2
  • 18
    • 0037471003 scopus 로고    scopus 로고
    • Pyogenic bacterial infections in humans with IRAK-4 deficiency
    • Picard, C. et al. Pyogenic bacterial infections in humans with IRAK-4 deficiency. Science 299, 2076-2079 (2003).
    • (2003) Science , vol.299 , pp. 2076-2079
    • Picard, C.1
  • 19
    • 32944464648 scopus 로고    scopus 로고
    • Pathogen recognition and innate immunity
    • Akira, S., Uematsu, S. & Takeuchi, O. Pathogen recognition and innate immunity. Cell 124, 783-801 (2006).
    • (2006) Cell , vol.124 , pp. 783-801
    • Akira, S.1    Uematsu, S.2    Takeuchi, O.3
  • 20
    • 3242664636 scopus 로고    scopus 로고
    • Recognition of commensal microflora by Toll-like receptors is required for intestinal homeostasis
    • Rakoff-Nahoum, S., Paglino, J., Eslami-Varzaneh, F., Edberg, S. & Medzhitov, R. Recognition of commensal microflora by Toll-like receptors is required for intestinal homeostasis. Cell 118, 229-241 (2004).
    • (2004) Cell , vol.118 , pp. 229-241
    • Rakoff-Nahoum, S.1    Paglino, J.2    Eslami-Varzaneh, F.3    Edberg, S.4    Medzhitov, R.5
  • 21
    • 40649127503 scopus 로고    scopus 로고
    • Histone acetylation in keratinocytes enables control of the expression of cathelicidin and CD14 by 1,25-dihydroxyvitamin D3
    • Schauber, J. et al. Histone acetylation in keratinocytes enables control of the expression of cathelicidin and CD14 by 1,25-dihydroxyvitamin D3. J. Invest. Dermatol. 128, 816-824 (2007).
    • (2007) J. Invest. Dermatol. , vol.128 , pp. 816-824
    • Schauber, J.1
  • 22
    • 0141446169 scopus 로고    scopus 로고
    • Pneumococcal lipoteichoic acid (LTA) is not as potent as staphylococcal LTA in stimulating Toll-like receptor 2
    • Han, S. H., Kim, J. H., Martin, M., Michalek, S. M. & Nahm, M. H. Pneumococcal lipoteichoic acid (LTA) is not as potent as staphylococcal LTA in stimulating Toll-like receptor 2. Infect. Immun. 71, 5541-5548 (2003).
    • (2003) Infect. Immun. , vol.71 , pp. 5541-5548
    • Han, S.H.1    Kim, J.H.2    Martin, M.3    Michalek, S.M.4    Nahm, M.H.5
  • 23
    • 0028800982 scopus 로고
    • Molecules from Staphylococcus aureus that bind CD14 and stimulate innate immune responses
    • Kusunoki, T., Hailman, E., Juan, T. S., Lichenstein, H. S. & Wright, S. D. Molecules from Staphylococcus aureus that bind CD14 and stimulate innate immune responses. J. Exp. Med. 182, 1673-1682 (1995).
    • (1995) J. Exp. Med. , vol.182 , pp. 1673-1682
    • Kusunoki, T.1    Hailman, E.2    Juan, T.S.3    Lichenstein, H.S.4    Wright, S.D.5
  • 24
    • 0038182550 scopus 로고    scopus 로고
    • Lipoteichoic acid (LTA) of Streptococcus pneumoniae and Staphylococcus aureus activates immune cells via Toll-like receptor (TLR)- 2, lipopolysaccharide-binding protein (LBP), and CD14, whereas TLR-4 and MD-2 are not involved
    • Schröder, N. W. J. et al. Lipoteichoic acid (LTA) of Streptococcus pneumoniae and Staphylococcus aureus activates immune cells via Toll-like receptor (TLR)- 2, lipopolysaccharide-binding protein (LBP), and CD14, whereas TLR-4 and MD-2 are not involved. J. Biol. Chem. 278, 15587-15594 (2003).
    • (2003) J. Biol. Chem. , vol.278 , pp. 15587-15594
    • Schröder, N.W.J.1
  • 25
    • 34547840161 scopus 로고    scopus 로고
    • Caspase 7 influences susceptibility to rheumatoid arthritis
    • García-Lozano, J. R. et al. Caspase 7 influences susceptibility to rheumatoid arthritis. Rheumatology 46, 1243-1247 (2007).
    • (2007) Rheumatology , vol.46 , pp. 1243-1247
    • García-Lozano, J.R.1
  • 26
    • 54949154875 scopus 로고    scopus 로고
    • Genetic and expression analysis of CASP7 gene in a European Caucasian population with rheumatoid arthritis
    • Teixeira, V. H. et al. Genetic and expression analysis of CASP7 gene in a European Caucasian population with rheumatoid arthritis. J. Rheumatol. 35, 1912-1918 (2008).
    • (2008) J. Rheumatol. , vol.35 , pp. 1912-1918
    • Teixeira, V.H.1
  • 27
    • 66349093381 scopus 로고    scopus 로고
    • Caspase-7 activation by the Nlrc4/Ipaf inflammasome restricts Legionella pneumophila infection
    • Akhter, A. et al. Caspase-7 activation by the Nlrc4/Ipaf inflammasome restricts Legionella pneumophila infection. PLoS Pathog. 5, e1000361 (2009).
    • (2009) PLoS Pathog. , vol.5
    • Akhter, A.1
  • 28
    • 84860560056 scopus 로고    scopus 로고
    • Temporal shifts in the skin microbiome associated with disease flares and treatment in children with atopic dermatitis
    • Kong, H. H. et al. Temporal shifts in the skin microbiome associated with disease flares and treatment in children with atopic dermatitis. Genome Res. 22, 850-859 (2012).
    • (2012) Genome Res. , vol.22 , pp. 850-859
    • Kong, H.H.1
  • 29
  • 30
    • 0347301899 scopus 로고    scopus 로고
    • Environmental risk factors in endemic pemphigus foliaceus (fogo selvagem)
    • Aoki, V. et al. Environmental risk factors in endemic pemphigus foliaceus (fogo selvagem). J. Investig. Dermatol. Symp. Proc. 9, 34-40 (2004).
    • (2004) J. Investig. Dermatol. Symp. Proc. , vol.9 , pp. 34-40
    • Aoki, V.1
  • 31
    • 79961126639 scopus 로고    scopus 로고
    • Identification of quantitative trait loci for murine autoimmune pancreatitis
    • Asghari, F. et al. Identification of quantitative trait loci for murine autoimmune pancreatitis. J. Med. Genet. 48, 557-562 (2011).
    • (2011) J. Med. Genet. , vol.48 , pp. 557-562
    • Asghari, F.1
  • 32
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith, T. F. & Waterman, M. S. Identification of common molecular subsequences. J. Mol. Biol. 147, 195-197 (1981).
    • (1981) J. Mol. Biol. , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 33
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang, Q., Garrity, G. M., Tiedje, J. M. & Cole, J. R. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73, 5261-5267 (2007).
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 34
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso, J. G. et al. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7, 335-336 (2010).
    • (2010) Nat. Methods , vol.7 , pp. 335-336
    • Caporaso, J.G.1
  • 35
    • 0034619331 scopus 로고    scopus 로고
    • A method for fine mapping quantitative trait loci in outbred animal stocks
    • Mott, R., Talbot, C. J., Turri, M. G., Collins, A. C. & Flint, J. A method for fine mapping quantitative trait loci in outbred animal stocks. Proc. Natl Acad. Sci. USA 97, 12649-12654 (2000).
    • (2000) Proc. Natl Acad. Sci. USA , vol.97 , pp. 12649-12654
    • Mott, R.1    Talbot, C.J.2    Turri, M.G.3    Collins, A.C.4    Flint, J.5
  • 36
    • 80052321622 scopus 로고    scopus 로고
    • Genome-wide and species-wide dissection of the genetics of arthritis severity in heterogeneous stock mice
    • Johnsen, A. K. et al. Genome-wide and species-wide dissection of the genetics of arthritis severity in heterogeneous stock mice. Arthritis. Rheum. 63, 2630-2640 (2011).
    • (2011) Arthritis. Rheum. , vol.63 , pp. 2630-2640
    • Johnsen, A.K.1
  • 37
    • 33746540478 scopus 로고    scopus 로고
    • Genome-wide genetic association of complex traits in heterogeneous stock mice
    • Valdar, W. et al. Genome-wide genetic association of complex traits in heterogeneous stock mice. Nat. Genet. 38, 879-887 (2006).
    • (2006) Nat. Genet. , vol.38 , pp. 879-887
    • Valdar, W.1
  • 38
    • 79953876813 scopus 로고    scopus 로고
    • Support for the reproductive ground plan hypothesis of social evolution and major QTL for ovary traits of Africanized worker honey bees (Apis mellifera L.)
    • Graham, A. M. et al. Support for the reproductive ground plan hypothesis of social evolution and major QTL for ovary traits of Africanized worker honey bees (Apis mellifera L.). BMC Evol. Biol. 11, 95 (2011).
    • (2011) BMC Evol. Biol. , vol.11 , pp. 95
    • Graham, A.M.1
  • 39
    • 69649109364 scopus 로고    scopus 로고
    • Circos: An information aesthetic for comparative genomics
    • Krzywinski, M. et al. Circos: an information aesthetic for comparative genomics. Genome Res. 19, 1639-1645 (2009).
    • (2009) Genome Res. , vol.19 , pp. 1639-1645
    • Krzywinski, M.1
  • 40
    • 77953953850 scopus 로고    scopus 로고
    • A diversity of beta diversities: Straightening up a concept gone awry. Part 1. Defining beta diversity as a function of alpha and gamma diversity
    • Tuomisto, H. A diversity of beta diversities: straightening up a concept gone awry. Part 1. Defining beta diversity as a function of alpha and gamma diversity. Ecography 2-22 (2010).
    • (2010) Ecography , pp. 2-22
    • Tuomisto, H.1
  • 41
    • 1142306112 scopus 로고    scopus 로고
    • VEGAN, a package of R functions for community ecology
    • Dixon, P. VEGAN, a package of R functions for community ecology. J. Veget. Sci. 14, 927-930 (2003).
    • (2003) J. Veget. Sci. , vol.14 , pp. 927-930
    • Dixon, P.1
  • 42
    • 0000286531 scopus 로고
    • An ordination of the upland forest communities of southern Wisconsin
    • Bray, J. & Curtis, J. An ordination of the upland forest communities of southern Wisconsin. Ecol. Monogr. 325-349 (1957).
    • (1957) Ecol. Monogr. , pp. 325-349
    • Bray, J.1    Curtis, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.