Integrated studies on abiotic stress defence in trees: The case of ozone

Developments in Environmental Science

Volumn 13, Issue , 2013, Pages 289-307

  Ernst, Dieter ^a  

^a INSTITUTE OF EPIDEMIOLOGY   (Germany)

Author keywords

Exposure chamber; Field experiments; Free air; Greenhouse; Lysimeter; Metabolome; Ozone; Proteome; Transcriptome

Indexed keywords

EID: 84888363892     PISSN: 14748177     EISSN: None     Source Type: Book Series    
DOI: 10.1016/B978-0-08-098349-3.00014-1     Document Type: Chapter

References (100)

1. Abbott A. The genomes of the giants: a walk through the forest of tree genomes. Tree Genet. Genomes 2012, 8:443. Preface.
2. Abril N., Gion J.-M., Kerner R., Müller-Starck G., Cerrillo R.M.N., Plomion C., Renaut J., Valledor L., Jorrin-Novo J.V. Proteomics research on forest trees, the most recalcitrant and orphan plant species. Phytochemistry 2011, 72:1219-1242.
3. Bachi A., Dalle-Donne I., Scaloni A. Redox proteomics: chemical principles, methodological approaches and biological/biomedical promises. Chem. Rev. 2013, 113:596-698.
4. Beltrao P., Albanèse V., Kenner L.R., Swaney D.L., Burlingame A., Villén J., Lim W.A., Fraser J.S., Frydman J., Krogan N.J. Systematic functional prioritization of protein posttranslational modifications. Cell 2012, 150:413-425.
5. Betz, G.A., 2006. Regulation des Shikimatstoffwechsels der europäischen Buche (Fagus sylvatica L.) unter dem Einfluß von Ozon. Thesis, Technische Universität München. http://nbn-resolving.de/urn/resolver.plurn:nbn:de:bvb:91-diss20060504-0931190040.
6. Betz G.A., Gerstner E., Olbrich M., Winkler J.B., Langebartels C., Heller W., Sandermann H., Ernst D. Effects of abiotic stress on gene transcription in European beech: ozone affects ethylene biosynthesis in saplings of Fagus sylvatica L. iForest 2009, 2:114-118.
7. Betz G.A., Gerstner E., Stich S., Winkler B., Welzl G., Kremmer E., Langebartels C., Heller W., Sandermann H., Ernst D. Ozone affects shikimate pathway genes and secondary metabolites in saplings of European beech (Fagus sylvatica L.) grown under greenhouse conditions. Trees 2009, 23:539-553.
8. Betz G.A., Knappe C., Lapierre C., Olbrich M., Welzl G., Langebartels C., Heller W., Sandermann H., Ernst D. Ozone affects shikimate pathway transcripts and monomeric lignin composition in European beech (Fagus sylvatica L.). Eur. J. For. Res. 2009, 128:109-116.
9. Bohler S., Bagard M., Oufir M., Planchon S., Hoffmann L., Jolivet Y., Hausman J.-F., Dizengremel P., Renaut J. A DIGE analysis of developing poplar leaves subjected to ozone reveals major changes in carbon metabolism. Proteomics 2007, 7:1584-1599.
10. Bohler S., Sergeant K., Lefèvre I., Jolivet Y., Hoffmann L., Renaut J., Dizengremel P., Hausman J.-F. Differential impact of chronic ozone exposure on expanding and fully expanded poplar leaves. Tree Physiol. 2010, 30:1415-1432.
11. Brosché M., Vinocur B., Alatalo E., Lamminmäki A., Teichmann T., Ottow E.A., Djilianov D., Afif D., Bogeat-Triboulot M.-B., Altman A., Polle A., Dreyer E., Rudd S., Paulin L., Auvinen P., Kangasjärvi J. Gene expression and metabolite profiling of Populus euphratica growing in the Negev desert. Genome Biol. 2005, 6:R101.
12. Cabané M., Pireaux J.-C., Léger E., Weber E., Dizengremel P., Pollet B., Lapierre C. Condensed lignins are synthesized in poplar leaves exposed to ozone. Plant Physiol. 2004, 134:586-594.
13. Charon C., Moreno A.B., Bardou F., Crespi M. Non-protein-coding RNAs and their interacting RNA-binding proteins in the plant cell nucleus. Mol. Plant 2010, 3:729-739.
14. Chinnusamy V., Zhu J.-K. Epigenetic regulation of stress responses in plants. Curr. Opin. Plant Biol. 2009, 12:133-139.
15. Chiron H., Drouet A., Lieutier F., Payer H.-D., Ernst D., Sandermann H. Gene induction of stilbene biosynthesis in Scots pine in response to ozone treatment, wounding, and fungal infection. Plant Physiol. 2000, 124:865-872.
16. Chitwood D.H., Timmermans M.C.P. Small RNAs are on the move. Nature 2010, 467:415-419.
17. Cudlín P., Seják J., Pokorný J., Albrechtová J., Bastian O., Marek M. Forest ecosystem services under climate change and air pollution. Climate Change, Air Pollution and Global Challenges: Understanding and Solutions from Forest Research. Dev. Environ. Sci 2013, 13:521-546. Elsevier, Netherlands. R. Matyssek, N. Clarke, P. Cudlin, T. Mikkelsen, J.P. Tuovinen, G. Weiser, E. Paoletti (Eds.).
18. 3-responsive genes in Arabidopsis thaliana by cDNA microarray analysis. Physiol. Plant. 2006, 128:70-79.
19. Dizengremel P., Jolivet Y., Tuzet A., Ranieri A., Thiec D. Integrative leaf-level phytotoxic ozone dose assessment for forest risk modelling. Dev. Environ. Sci. 2013, 13:267-288.
20. Galliano H., Cabané M., Eckerskorn C., Lottspeich F., Sandermann H., Ernst D. Molecular cloning, sequence analysis and elicitor-/ozone induced accumulation of cinnamyl alcohol dehydrogenase from spruce (Picea abies L.). Plant Mol. Biol. 1993, 23:145-156.
21. Gayler S., Priesack E., Fleischmann F., Heller W., Rötzer T., Seifert T., Matyssek R. Modelling the defensive potential of plants. Ecological Studies 2012, vol. 220:375-399. Springer-Verlag, Berlin. R. Matyssek, H. Schnyder, W. Oßwald, D. Ernst, J.C. Munch, H. Pretzsch (Eds.).
22. Grattapaglia D., Vaillancourt R.E., Shepherd M., Thumma B.R., Foley W., Külheim C., Potts B.M., Myburg A.A. Progress in Myrtaceae genetics and genomics: Eucalyptus as the pivotal genus. Tree Genet. Genomes 2012, 8:463-508.
23. Grünhage L., Matyssek R., Wieser G., Häberle K.-H., Leuchner M., Menzel A., Dieler J., Pretzsch H., Grimmeisen W., Zimmermann L., Raspe S., Schröder M. Flux-based ozone risk assessment for adult beech and spruce forests. Dev. Environ. Sci. 2013, 13:251-266.
24. 3. New Phytol. 2005, 167:129-142.
25. Gygi S.P., Rochon Y., Franza B.R., Aebersold R. Correlation between protein and mRNA abundance in yeast. Mol. Cell. Biol. 1999, 19:1720-1730.
26. Heath R.L. Modification of the biochemical pathways of plants induced by ozone: what are the varied routes to change?. Environ. Pollut. 2008, 155:453-463.
27. Janz D., Behnke K., Schnitzler J.-P., Kanawati B., Schmitt-Kopplin P., Polle A. Pathway analysis of the transcriptome and metabolome of salt sensitive and tolerant poplar species reveals evolutionary adaption of stress tolerance mechanisms. BMC Plant Biol. 2010, 10:150.
28. Janzik I., Preiskowski S., Kneifel H. Ozone has dramatic effects on the regulation of the prechorismate pathway in tobacco (Nicotiana tabacum L. cv. Bel W3). Planta 2005, 223:20-27.
29. Jaspers P., Kollist H., Langebartels C., Kangasjärvi J. Plant responses to ozone. Antioxidative and Reactive Oxygen Species in Plants 2005, 268-292. Blackwell Publishing, Oxford. N. Smirnoff (Ed.).
30. Jehnes S., Betz G., Bahnweg G., Haberer G., Sandermann H., Rennenberg H. Tree internal signalling and defence reactions under ozone exposure in sun and shade leaves of European beech (Fagus sylvatica L.) trees. Plant Biol. 2007, 9:253-264.
31. Jia X., Ren L., Chen Q.-J., Li R., Tang G. UV-B-responsive microRNAs in Populus tremula. J. Plant Physiol. 2009, 166:2046-2057.
32. Johnson Ø., Kvaalen H., Yakovlev I., Dæhlen O.G., Fossdal C.G., Skrøppa T. An epigenetic memory from time of embryo development affects climatic adaptation in Norway spruce. Plant Cold Hardiness: From the Laboratory to the Field 2009, 99-107. CAB International, Wallingford. L. Gusta, M. Wisniewski, K. Tanino (Eds.).
33. Karnosky D.F., Pregitzer K.S., Zak D.R., Kubiske M.E., Hendrey G.R., Weinstein D., Nosal M., Percy K.E. Scaling ozone responses of forest trees to the ecosystem level in a changing climate. Plant Cell Environ. 2005, 28:965-981.
34. Karnosky D.F., Werner H., Holopainen T., Percy K., Oksanen T., Oksanen E., Heerdt C., Fabian P., Nagy J., Heilman W., Cox R., Nelson N., Matyssek R. Free-air exposure systems to scale up ozone research to mature trees. Plant Biol. 2007, 9:181-190.
35. Kerner R., Winkler J.B., Dupuy J.W., Jürgensen M., Lindermayr C., Ernst D., Müller-Starck G. Changes in the proteome of juvenile European beech following three years exposure to free-air elevated ozone. iForest 2011, 4:69-76.
36. 3: a synthesis of experimental evidence. Dev. Environ. Sci. 2013, 13:179-208.
37. Knoke T., Hahn A. Global change and the role of forests in future land-use systems. Climate Change, Air Pollution and Global Challenges: Understanding and Solutions from Forest Research. Dev. Environ. Sci 2013, 13:569-587. Elsevier, Netherlands. R. Matyssek, N. Clarke, P. Cudlin, T. Mikkelsen, J.-P. Tuovinen, G. Weiser, E. Paoletti (Eds.).
38. Koch J.R., Schwerzer A.J., Eshita S.M., Davis K.R. Ozone sensitivity in hybrid poplar is correlated with a lack of defense-gene activation. Plant Physiol. 1998, 118:1243-1252.
39. Kontunen-Soppela S., Ossipov V., Ossipova S., Oksanen E. Shift in birch leaf metabolome and carbon allocation during long-term open-field ozone exposure. Glob. Chang. Biol. 2007, 13:1053-1067.
40. 3 during leaf maturation and senescence. Environ. Pollut. 2010, 158:959-968.
41. 2 and tropospheric ozone. Plant Cell Environ. 2010, 33:1016-1028.
42. Kosova K., Vítámvás P., Prášil I.T., Renaut J. Plant proteome changes under abiotic stress-contribution of proteomics studies to understanding plant stress response. J. Proteomics 2011, 74:1301-1322.
43. Kremer A., Abbott A.G., Carlson J.E., Manos P.S., Plomion C., Sisco P., Staton M.E., Ueno S., Vendramin G.G. Genomics of Fagaceae. Tree Genet. Genomes 2012, 8:583-610.
44. Langebartels C., Ernst D., Heller W., Lütz C., Payer H.-D., Sandermann H. Ozone responses of trees: results from controlled chamber exposures at the GSF phytotron. Ecological Studies 1997, vol. 127:163-200. Springer-Verlag, Berlin. H. Sandermann, A. Wellburn, R. Heath (Eds.).
45. Langebartels C., Heller W., Führer G., Lippert M., Simons S., Sandermann H. Memory effects in the action of ozone on conifers. Ecotoxicol. Environ. Saf. 1998, 41:62-72.
46. Langebartels C., Schraudner M., Heller W., Ernst D., Sandermann H. Oxidative stress and defense reactions in plants exposed to air pollutants and UV-B radiation. Oxidative Stress in Plants 2002, 105-135. Taylor & Francis, London. D. Inzé, M. Van Montagu (Eds.).
47. Li P., Mane S.P., Sioson A.A., Robinet C.V., Heath L.S., Bohnert H.J., Grene R. Effects of chronic ozone exposure on gene expression in Arabidopsis thaliana ecotypes and in Thellungiella halophila. Plant Cell Environ. 2006, 29:854-868.
48. Lira-Medeiros C.F., Parisod C., Fernandes R.A., Mata C.S., Cardoso M.A., Ferreira P.C.G. Epigenetic variation in mangrove plants occurring in contrasting natural environment. PLoS One 2010, 5:e10326.
49. Lu S., Sun Y.-H., Shi R., Clark C., Li L., Chiang V.L. Novel and mechanical stress-responsive microRNAs in Populus trichocarpa that are absent from Arabidopsis. Plant Cell 2005, 17:2186-2203.
50. Lu S., Sun Y.-H., Chiang V.L. Stress-responsive microRNAs in Populus. Plant J. 2008, 55:131-151.
51. Ludwikow A., Gallois P., Sadowski J. Ozone-induced oxidative stress response in Arabidopsis: transcription profiling by microarray approach. Cell. Mol. Biol. Lett. 2004, 9:829-842.
52. Matyssek R., Sandermann H. Impact of ozone on trees: an ecophysiological perspective. Progress in Botany 2003, vol. 64:349-404. Springer, Berlin.
53. Matyssek R., Sandermann H., Wieser G., Booker F., Cieslik S., Musselman R., Ernst D. The challenge of making ozone risk assessment for forest trees more mechanistic. Environ. Pollut. 2008, 156:567-582.
54. Matyssek R., Karnosky D.F., Wieser G., Percy K., Oksanen E., Grams T.E.E., Kubiske M., Hanke D., Pretzsch H. Advances in understanding ozone impact on forest trees: messages from novel phytotron and free-air fumigation studies. Environ. Pollut. 2010, 158:1990-2006.
55. Matyssek R., Wieser G., Ceulemans R., Rennenberg H., Pretzsch H., Haberer K., Löw M., Nunn A.J., Werner H., Wipfler P., Oßwald W., Nikolova P., Hanke D.E., Kraigher H., Tausz M., Bahnweg G., Kitao M., Dieler J., Sandermann H., Herbinger K., Grebenc T., Blumenröther M., Deckmyn G., Grams T.E.E., Heerdt C., Leuchner M., Fabian P., Häberle K.-H. Enhanced ozone strongly reduces carbon sink strength of adult beech (Fagus sylvatica)-resume from the free-air fumigation study at Kranzberg Forest. Environ. Pollut. 2010, 158:2527-2532.
56. Matyssek R., Wieser G., Calfapietra C., de Vries W., Dizengremel P., Ernst D., Jolivet Y., Mikkelsen T.N., Mohren G.M.J., Le Thiec D., Tuovinen J.-P., Weatherall A., Paoletti E. Forests under climate change and air pollution: gaps in understanding and future directions for research. Environ. Pollut. 2012, 160:57-65.
57. Matyssek R., Clarke N., Cudlin P., Mikkelsen T.N., Tuovinen J.-P., Wieser G., Paoletti E. Climate change, air pollution and global challenges: Understanding and perspectives from forest research. Dev. Environ. Sci. 2013, 13:3-16.
58. Matyssek R., Wieser G., Fleischmann F., Grunhage L. Ozone Research, quo vadis? Lessons from the Kranzberg Forest Experiment. Dev. Environ. Sci. 2013, 13:103-129.
59. 3. Field Crops Res. 2004, 90:47-59.
60. Mikkelsen T.N., Clarke N., Danielewska A., Fischer R. Towards supersites in forest ecosystem monitoring and research. Dev. Environ. Sci. 2013, 13:475-495.
61. Moeder W., Barry C.S., Tauriainen A.A., Betz C., Tuomainen J., Utrianen M., Grierson D., Sandermann H., Langebartels C., Kangasjärvi J. Ethylene synthesis regulated by biphasic induction of 1-aminocyclopropane-1-carboxylic acid synthase and 1-aminocyclopropane-1-carboxylic acid oxidase genes is required for hydrogen peroxide accumulation and cell death in ozone-exposed tomato. Plant Physiol. 2002, 130:1918-1926.
62. Nunn A.J., Anegg S., Betz G., Simons S., Kalisch G., Seidlitz H.K., Grams T.E.E., Häberle K.-H., Matyssek R., Bahnweg G., Sandermann H., Langebartels C. Role of ethylene in the regulation of cell death and leaf loss in ozone-exposed European beech. Plant Cell Environ. 2005, 28:886-897.
63. Nijnik M., Miller D. Targeting sustainable provision of forest ecosystem services with special focus on carbon sequestration. Climate Change, Air Pollution and Global Challenges: Understanding and Solutions from Forest Research. Dev. Environ. Sci 2013, 13:547-568. Elsevier, Netherlands. R. Matyssek, N. Clarke, P. Cudlin, T. Mikkelsen, J.-P. Tuovinen, G. Weiser, E. Paoletti (Eds.).
64. Oksanen E. Responses of selected birch (Betula pendula Roth) clones to ozone change over time. Plant Cell Environ. 2003, 26:875-886.
65. 2 and climate warming. Dev. Environ. Sci. 2013, 13:309-329.
66. Olbrich M., Betz G., Gerstner E., Langebartels C., Sandermann H., Ernst D. Transcriptome analysis of ozone-responsive genes in leaves of European beech (Fagus sylvatica L.). Plant Biol. 2005, 7:670-676.
67. Olbrich M., Gerstner E., Welzl G., Winkler J.B., Ernst D. Transcript responses in leaves of ozone-treated beech saplings at an outdoor free air fumigation site over two growing seasons. Plant Soil 2009, 323:61-74.
68. Olbrich M., Knappe C., Wenig M., Gerstner E., Häberle K.-H., Kitao M., Matyssek R., Stich S., Leuchner M., Werner H., Schlink K., Müller-Starck G., Welzl G., Scherb H., Ernst D., Heller W., Bahnweg G. Ozone fumigation (twice ambient) reduces leaf infestation following natural and artificial inoculation by the endophytic fungus Apiognomonia errabunda of adult European beech trees. Environ. Pollut. 2010, 158:1043-1050.
69. Olbrich M., Gerstner E., Bahnweg G., Häberle K.-H., Matyssek R., Welzl G., Heller W., Ernst D. Transcriptional signatures in leaves of adult European beech trees (Fagus sylvatica L.) in an experimentally enhanced free air ozone setting. Environ. Pollut. 2010, 158:977-982.
70. Ossipov V., Ossipova S., Bykov V., Oksanen E., Koricheva J., Haukioja E. Application of metabolomics to genotype and phenotype discrimination of birch trees grown in a long-term open-field experiment. Metabolomics 2008, 4:39-51.
71. Pääkkönen E., Seppänen S., Holopainen T., Kokko H., Kärenlampi S., Kärenlampi L., Kangasjärvi J. Induction of genes for the stress proteins PR-10 and PAL in relation to growth, visible injuries and stomatal conductance in birch (Betula pendula) clones exposed to ozone and/or drought. New Phytol. 1998, 138:295-305.
72. Paoletti E., de Vries W., Mikkelsen T.N., Ibrom A., Larsen K.S., Tuovinen J.P., Serengil Y., Yurtseven I., Wieser G., Matyssek R. Key indicators of air pollution and climate change impacts at forest Supersites. Dev. Environ. Sci. 2013, 13:497-518.
73. Perco P., Mühlberger I., Mayer G., Oberbauer R., Lukas A., Mayer B. Linking transcriptomic and proteomic data on the level of protein interaction networks. Electrophoresis 2010, 31:1780-1789.
74. Plomion C., Lalanne C., Claverol S., Meddour H., Kohler A., Bogeat-Triboulot M.-B., Barre A., Le Provost G., Dumazet H., Jacob D., Bastien C., Dreyer E., de Daruvar A., Guehl J.-M., Schmitter J.M., Martin F., Bonneu M. Mapping the proteome of poplar and application to the discovery of drought-stress responsive proteins. Proteomics 2006, 6:6509-6527.
75. 3 in developing forests. Dev. Environ. Sci. 2013, 13:209-226.
76. Pretzsch H., Dieler J., Matyssek R., Wipfler P. Tree and stand growth of mature Norway spruce and European beech under long-term ozone fumigation. Environ. Pollut. 2010, 158:1061-1070.
77. Puckette M.C., Tang Y., Mahalingam R. Transcriptomic changes induced by acute ozone in resistant and sensitive Medicago truncatula accessions. BMC Plant Biol. 2008, 8:46.
78. Renaut J., Bohler S., Hausman J.-F., Hoffmann L., Sergeant K., Ahsan N., Jolivet Y., Dizengremel P. The impact of atmospheric composition on plants: a case study of ozone and poplar. Mass Spectrom. Rev. 2009, 28:495-516.
79. Rigault P., Boyle B., Lepage P., Cooke J.E.K., Bousquet J., MacKay J.J. A white spruce gene catalog for conifer genome analyses. Plant Physiol. 2011, 157:14-28.
80. Rötzer T., Seifert T., Gayler S., Priesack E., Pretzsch H. Effects of stress and defence allocation on tree growth: simulation results at the individual and stand level. Ecological Studies 2012, vol. 220:401-432. Springer-Verlag, Berlin. R. Matyssek, H. Schnyder, W. Oßwald, D. Ernst, J.C. Munch, H. Pretzsch (Eds.).
81. Sánchez-Pons N., Irar S., García-Muniz N., Vicient C.M. Transcriptomic and proteomic profiling of maize embryos exposed to camptothecin. BMC Plant Biol. 2011, 11:91.
82. Sandermann H., Matyssek R. Scaling up from molecular to ecological processes. Ecological Studies 2004, vol. 170:207-226. Springer-Verlag, Berlin. H. Sandermann (Ed.).
83. Sandermann H., Ernst D., Heller W., Langebartels C. Ozone: an abiotic elicitor of plant defence reactions. Trends Plant Sci. 1998, 3:47-50.
84. Sasek T.W., Richardson C.J., Fendick E.A., Bevington S.R., Kress L.W. Carryover effects of acidic rain and ozone on the physiology of multiple flushes of loblolly pine seedlings. Forest Sci. 1991, 37:1078-1098.
85. Scherling C., Roscher C., Giavalisco P., Schulze E.-D., Weckwerth W. Metabolomics unravel contrasting effects of biodiversity on the performance of individual plant species. PLoS One 2010, 5:e12569.
86. Schneiderbauer A., Back E., Sandermann H., Ernst D. Ozone induction of extensin mRNA in Scots pine, Norway spruce and European beech. New Phytol. 1995, 130:225-230.
87. Sergeant K., Spieß N., Renaut J., Wilhelm E., Hausman J.F. One dry summer: a leaf proteome study on the response of oak to drought exposure. J. Proteomics 2011, 74:1385-1395.
88. Tamaoki M., Matsuyama T., Kanna M., Nakajima N., Kubo A., Aono M., Saji H. Differential ozone sensitivity among Arabidopsis accessions and its relevance to ethylene synthesis. Planta 2003, 216:552-560.
89. 3-treated Arabidopsis plants. Plant Cell Environ. 2006, 29:1686-1702.
90. Tuomainen J., Betz C., Kangasjärvi J., Ernst D., Yin Z.-H., Langebartels C., Sandermann H. Ozone induction of ethylene emission in tomato plants: regulation by differential accumulation of transcripts for the biosynthetic enzymes. Plant J. 1997, 12:1151-1162.
91. Tuskan G.A., DiFazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Déjardin A., dePamphilis C., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjärvi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leplé J.C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouzé P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 2006, 313:1596-1604.
92. Vahala J., Keinänen M., Schützendübel A., Polle A., Kangasjärvi J. Differential effects of elevated ozone on two hybrid aspen genotypes predisposed to chronic ozone fumigation. Role of ethylene and salicylic acid. Plant Physiol. 2003, 132:196-205.
93. Vapaavuori, E., Oksanen, T., Holopainen, J.K., Holopainen, T., Heiskanen, J., Julkunen-Tiitto, R., Kasurinen, A., Laitinen, J., Oksanen, E., Peltonen, P., Poteri, M., Repo, T., Riikonen, J., Syrjälä, S., 2002. Technical report. Open-top chamber fumigation of cloned silver birch (Betula pendula Roth) trees to elevated CO2 and ozone: description of the fumigation system and the experimental site. Metsäntutkimuslaitoksen tiedonantoja 838. http://www.metla.fi/julkaisut/mt/838.
94. Warren C.R., Aranda I., Cano F.J. Metabolomics demonstrates divergent responses of two Eucalyptus species to water stress. Metabolomics 2012, 8:186-200.
95. Weckwerth W. Metabolomics: an integral technique in systems biology. Bioanalysis 2010, 2:829-836.
96. Weckwerth W. Green systems biology-from single genomes, proteomes and metabolomes to ecosystems research and biotechnology. J. Proteomics 2011, 75:284-305.
97. Winkler J.B., Lang H., Graf W., Reth S., Munch J.C. Experimental setup of field lysimeters for studying effects of elevated ozone and below-ground pathogen infection on a plant-soil-system of juvenile beech (Fagus sylvatica L.). Plant Soil 2009, 323:7-19.
98. 3?. Environ. Pollut. 2001, 115:473-481.
99. zu Castell W., Ernst D. Experimental 'omics' data in tree research: facing complexity. Trees 2012, 26:1723-1735.
100. zu Castell W., Matyssek R., Göttlein A., Fleischmann F., Staninska A. Learning from various plants and scenarios: statistical modeling. Ecological Studies 2012, vol. 220:355-373. Springer-Verlag, Berlin. R. Matyssek, H. Schnyder, W. Oßwald, D. Ernst, J.C. Munch, H. Pretzsch (Eds.).