Metabolomics unravel contrasting effects of biodiversity on the performance of individual plant species

PLoS ONE

Volumn 5, Issue 9, 2010, Pages 1-13

  Scherling, Christian ^a   Roscher, Christiane ^b,c   Giavalisco, Patrick ^d   Schulze, Ernst Detlef ^b   Weckwerth, Wolfram ^e  

^a TECHNICAL UNIVERSITY OF BRAUNSCHWEIG   (Germany)

^b MAX PLANCK INSTITUTE FOR BIOGEOCHEMISTRY   (Germany)

^c HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH UFZ   (Germany)

^d MAX PLANCK INSTITUTE OF MOLECULAR PLANT PHYSIOLOGY   (Germany)

^e UNIVERSITY OF VIENNA   (Austria)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BELLIS PERENNIS; BIODIVERSITY; CONTROLLED STUDY; FOURIER TRANSFORM MASS SPECTROMETRY; GAS CHROMATOGRAPHY; GRASSLAND; HERB; KNAUTIA ARVENSIS; LEGUME; LEOTODON AUTUMNALIS; LOTUS CORNICULATUS; MEDICO X VARIA; METABOLOMICS; NONHUMAN; PLANT COMMUNITY; PLANT METABOLISM; POACEAE; SHORT STATURE; TIME OF FLIGHT MASS SPECTROMETRY; ULTRA PERFORMANCE LIQUID CHROMATOGRAPHY; CHEMISTRY; GENETICS; METABOLISM; PLANT;

BELLIS PERENNIS; KNAUTIA ARVENSIS; LEONTODON AUTUMNALIS; LOTUS CORNICULATUS; MEDICAGO SATIVA SUBSP. X VARIA; POACEAE;

BIODIVERSITY; METABOLOMICS; PLANTS;

EID: 77958599500     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0012569     Document Type: Article

References (42)

1. Hooper DU, Chapin FS, Ewel JJ, Hector A, Inchausti P, et al. (2005) Effects of biodiversity on ecosystem functioning: A consensus of current knowledge. Ecological Monographs 75: 3-35.
2. Balvanera P, Pfisterer AB, Buchmann N, He JS, Nakashizuka T, et al. (2006) Quantifying the evidence for biodiversity effects on ecosystem functioning and services. Ecology Letters 9: 1146-1156.
3. Cardinale BJ, Wright JP, Cadotte MW, Carroll IT, Hector A, et al. (2007) Impacts of plant diversity on biomass production increase through time because of species complementarity. Proceedings of the National Academy of Sciences of the United States of America 104: 18123-18128.
4. Aarssen LW (1997) High productivity in grassland ecosystems: effected by species diversity or productive species? Oikos 80: 183-184.
5. Huston MA (1997) Hidden treatments in ecological experiments: Re-evaluating the ecosystem function of biodiversity. Oecologia 110: 449-460.
6. Tilman D, Knops J, Wedin D, Reich P, Ritchie M, et al. (1997) The influence of functional diversity and composition on ecosystem processes. Science 277: 1300-1302.
7. HilleRisLambers J, Harpole WS, Tilman D, Knops J, Reich PB (2004) Mechanisms responsible for the positive diversity-productivity relationship in Minnesota grasslands. Ecology Letters 7: 661-668.
8. Spehn EM, Hector A, Joshi J, Scherer-Lorenzen M, Schmid B, et al. (2005) Ecosystem effects of biodiversity manipulations in European grasslands. Ecological Monographs 75: 37-63.
9. Marquard E, Weigelt A, Roscher C, Gubsch M, Lipowsky A, et al. (2009) Positive biodiversity-productivity relationship due to increased plant density. Journal of Ecology 97: 696-704.
10. Spehn EM, Joshi J, Schmid B, Diemer M, Korner C (2000) Above-ground resource use increases with plant species richness in experimental grassland ecosystems. Functional Ecology 14: 326-337.
11. Lorentzen S, Roscher C, Schumacher J, Schulze ED, Schmid B (2008) Species richness and identity affect the use of aboveground space in experimental grasslands. Perspectives in Plant Ecology Evolution and Systematics 10: 73-87.
12. Oelmann Y, Kreutziger Y, Temperton VM, Buchmann N, Roscher C, et al. (2007) Nitrogen and phosphorus budgets in experimental grasslands of variable diversity. Journal of Environmental Quality 36: 396-407.
13. Knops JMH, Tilman D, Haddad NM, Naeem S, Mitchell CE, et al. (1999) Effects of plant species richness on invasion dynamics, disease outbreaks, insect abundances and diversity. Ecology Letters 2: 286-293.
14. Koricheva J, Mulder CPH, Schmid B, Joshi J, Huss-Danell K (2000) Numerical responses of different trophic groups of invertebrates to manipulations of plant diversity in grasslands. Oecologia 125: 271-282.
15. Mitchell CE, Tilman D, Groth JV (2002) Effects of grassland plant species diversity, abundance, and composition on foliar fungal disease. Ecology 83: 1713-1726.
16. Roscher C, Schumacher J, Weisser WW, Schmid B, Schulze ED (2007) Detecting the role of individual species for overyielding in experimental grassland communities composed of potentially dominant species. Oecologia 154: 535-549.
17. Weckwerth W (2003) Metabolomics in systems biology. Annu Rev Plant Biol 54: 669-689.
18. Morgenthal K, Wienkoop S, Scholz M, Selbig J, Weckwerth W (2005) Correlative GC-TOF-MS based metabolite profiling and LC-MS based protein profiling reveal time-related systemic regulation of metabolite-protein networks and improve pattern recognition for multiple biomarker selection. Metabolomics 1: 109-121.
19. Fiehn O, Kopka J, Dormann P, Altmann T, Trethewey RN, et al. (2000) Metabolite profiling for plant functional genomics. Nature Biotechnology 18: 1157-1161.
20. Viant MR (2008) Recent developments in environmental metabolomics. Molecular Biosystems 4: 980-986.
21. Weckwerth W, Wenzel K, Fiehn O (2004) Process for the integrated extraction identification, and quantification of metabolites, proteins and RNA to reveal their co-regulation in biochemical networks. Proteomics 4: 78-83.
22. Hoehenwarter W, van Dongen JT, Wienkoop S, Steinfath M, Humme J, et al. (2008) A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment. Proteomics 8: 4214-4225.
23. Roscher C, Schumacher J, Baade J, Wilcke W, Gleixner G, et al. (2004) The role of biodiversity for element cycling and trophic interactions: an experimental approach in a grassland community. Basic and Applied Ecology 5: 107-121.
24. Grime JP (1973) Competitive Exclusion in Herbaceous Vegetation. Nature 242: 344-347.
25. Giavalisco P, Kohl K, Hummel J, Seiwert B, Willmitzer L (2009) C-13 Isotope-Labeled Metabolomes Allowing for Improved Compound Annotation and Relative Quantification in Liquid Chromatography-Mass Spectrometry-based Metabolomic Research. Analytical Chemistry 81: 6546-6551.
26. Temperton VM, Mwangi PN, Scherer-Lorenzen M, Schmid B, Buchmann N (2007) Positive interactions between nitrogen-fixing legumes and four different neighbouring species in a biodiversity experiment. Oecologia 151: 190-205.
27. Stitt M, Schulze D (1994) Does Rubisco Control the Rate of Photosynthesis and Plant- Growth - an Exercise in Molecular Ecophysiology. Plant Cell and Environment 17: 465-487.
28. Stitt M, Krapp A (1999) The interaction between elevated carbon dioxide and nitrogen nutrition: the physiological and molecular background. Plant Cell and Environment 22: 583-621.
29. Roscher C, Kutsch W, Schulze E-D (2010) Light and nitrogen competition limit Lolium perenne in experimental grasslands of increasing plant diversity. Plant Biology doi:10.1111/j.1438-8677.2010.00338.x.
30. Roscher C, Buchmann N, Schmid B, Weigelt A, Schulze E-D (2010) Legume species differ in the responses of their functional traits to plant diversity. Oecologia doi 10.1007/s00442-010-1735-9.
31. Giavalisco P, Hummel J, Lisec J, Inostroza AC, Catchpole G, et al. (2008) High-Resolution Direct Infusion-Based Mass Spectrometry in Combination with Whole C-13 Metabolome Isotope Labeling Allows Unambiguous Assignment of Chemical Sum Formulas. Analytical Chemistry 80: 9417-9425.
32. Kind T, Fiehn O (2006) Metabolomic database annotations via query of elemental compositions: Mass accuracy is insufficient even at less than 1 ppm. BMC Bioinformatics 7: 234.
33. Gaudet CL, Keddy PA (1988) A Comparative Approach to Predicting Competitive Ability from Plant Traits. Nature 334: 242-243.
34. Grime JP (1998) Benefits of plant diversity to ecosystems: immediate, filter and founder effects. Journal of Ecology 86: 902-910.
35. Dassler A, Roscher C, Temperton VM, Schumacher J, Schulze ED (2008) Adaptive survival mechanisms and growth limitations of small-stature herb species across a plant diversity gradient. Plant Biology 10: 573-587.
36. Thein S, Roscher C, Schulze ED (2008) Effects of trait plasticity on aboveground biomass production depend on species identity in experimental grasslands. Basic and Applied Ecology 9: 475-484.
37. Weinig C (2000) Limits to adaptive plasticity: Temperature and photoperiod influence shade-avoidance responses. American Journal of Botany 87: 1660-1668.
38. Kluge G, Müller-Westermeier G (2000) Das Klima ausgewä hlter Orte der Bundesrepublik Deutschland: Jena.: Berichte des Deutschen Wetterdienstes 213. Offenbach/Main.
39. Ellenberg H (1988) Vegetation ecology of Central Europe.
40. Rothmaler R (2002) Exkursionsflora von Deutschland. Bd. 4. Kritischer Band. Jäger EJ, Werner K, eds, 9th ed., Spektrum.
41. Luedemann A, Strassburg K, Erban A, Kopka J (2008) TagFinder for the quantitative analysis of gas chromatography - mass spectrometry (GC-MS)-based metabolite profiling experiments. Bioinformatics 24: 732-737.
42. Erban A, Schauer N, Fernie AR, Kopka J (2007) Nonsupervised construction and application of mass spectral and retention time index libraries from time-of-flight gas chromatography-mass spectrometry metabolite profiles. Methods Mol Biol 358: 19-38.