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Volumn 5, Issue 4, 2010, Pages

Epigenetic variation in mangrove plants occurring in contrasting natural environment

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; GUANINE; SODIUM CHLORIDE;

EID: 77956397846     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0010326     Document Type: Article
Times cited : (302)

References (56)
  • 1
    • 0031972059 scopus 로고    scopus 로고
    • Epigenetic inheritance in evolution
    • Jablonka E, Lamb M (1998) Epigenetic inheritance in evolution. J Evol Biol 11: 159-183.
    • (1998) J Evol Biol , vol.11 , pp. 159-183
    • Jablonka, E.1    Lamb, M.2
  • 2
    • 3042701155 scopus 로고    scopus 로고
    • Epigenomics: Beyond CpG islands
    • Fazzari M, Greally J (2004) Epigenomics: beyond CpG islands. Nat Rev Genet 5: 446-455.
    • (2004) Nat Rev Genet , vol.5 , pp. 446-455
    • Fazzari, M.1    Greally, J.2
  • 3
    • 85058724245 scopus 로고    scopus 로고
    • Epigenetics: Imprinting in plants and mammal the same but different?
    • Scott R, Spielman M (2006) Epigenetics: imprinting in plants and mammal the same but different? Curr Biol 14: R200-R203.
    • (2006) Curr Biol , vol.14
    • Scott, R.1    Spielman, M.2
  • 4
    • 17344392822 scopus 로고    scopus 로고
    • Plant epigenetics
    • Bender J (2000) Plant epigenetics. Curr Biol 12: R412-414.
    • (2000) Curr Biol , vol.12
    • Bender, J.1
  • 5
    • 29644435144 scopus 로고    scopus 로고
    • Epigenetics and plant evolution
    • Rapp R, Wendel J (2005) Epigenetics and plant evolution. New Phytol 168: 81-91.
    • (2005) New Phytol , vol.168 , pp. 81-91
    • Rapp, R.1    Wendel, J.2
  • 6
    • 70449341719 scopus 로고    scopus 로고
    • Rapid structural and epigenetic reorganization near transposable elements in hybrid and allopolyploid genomes
    • Parisod C, Salmon A, Tenaillon M, Zerjal T, Grandbastien MA, et al. (2009) Rapid structural and epigenetic reorganization near transposable elements in hybrid and allopolyploid genomes. New Phytol 183: 1003-1015.
    • (2009) New Phytol , vol.183 , pp. 1003-1015
    • Parisod, C.1    Salmon, A.2    Tenaillon, M.3    Zerjal, T.4    Grandbastien, M.A.5
  • 7
    • 34249798697 scopus 로고    scopus 로고
    • DNA methylation dynamics in plant genomes
    • Gehring M, Henikoff S (2007) DNA methylation dynamics in plant genomes. Biochim Biophys Acta 1769: 276-286.
    • (2007) Biochim Biophys Acta , vol.1769 , pp. 276-286
    • Gehring, M.1    Henikoff, S.2
  • 8
    • 0035810998 scopus 로고    scopus 로고
    • Protein-coding genes are epigenetically regulated in Arabidopsis polyploids
    • Lee HS, Chen ZJ (2001) Protein-coding genes are epigenetically regulated in Arabidopsis polyploids. Proc Natl Acad Sci U S A 98: 6753-6758.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 6753-6758
    • Lee, H.S.1    Chen, Z.J.2
  • 9
    • 2342635059 scopus 로고    scopus 로고
    • Genetic and epigenetic evaluations of citrus calluses recovered from slow-growth culture
    • Hao Y, Wen X, Deng X (2004) Genetic and epigenetic evaluations of citrus calluses recovered from slow-growth culture. J Plant Physiol 161: 479-484.
    • (2004) J Plant Physiol , vol.161 , pp. 479-484
    • Hao, Y.1    Wen, X.2    Deng, X.3
  • 10
    • 33745726564 scopus 로고    scopus 로고
    • RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNA methylation in Arabidopsis
    • Chan SL, Henderson I, Zhang X, Shah G, Chien JC, et al. (2006) RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNA methylation in Arabidopsis. PLoS Genet 2: 791-797.
    • (2006) PLoS Genet , vol.2 , pp. 791-797
    • Chan, S.L.1    Henderson, I.2    Zhang, X.3    Shah, G.4    Chien, J.C.5
  • 11
    • 33745561418 scopus 로고    scopus 로고
    • Endogenous targets of RNA-directed DNA methylation and pol IV in Arabidopsis
    • Huettel B, Kanno T, Daxinger L, Aufsatz W, Matzke A, et al. (2006) Endogenous targets of RNA-directed DNA methylation and pol IV in Arabidopsis. EMBO J 25: 2826-2836.
    • (2006) EMBO J , vol.25 , pp. 2826-2836
    • Huettel, B.1    Kanno, T.2    Daxinger, L.3    Aufsatz, W.4    Matzke, A.5
  • 12
    • 33748629119 scopus 로고    scopus 로고
    • Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis
    • Zhang X, Yazaki J, Sundaresan A, Cokus S, Chan S, et al. (2006) Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis. Cell 126: 1189-1201.
    • (2006) Cell , vol.126 , pp. 1189-1201
    • Zhang, X.1    Yazaki, J.2    Sundaresan, A.3    Cokus, S.4    Chan, S.5
  • 13
    • 42549085238 scopus 로고    scopus 로고
    • The epigenetic landscape of plants
    • Zhang X (2008) The epigenetic landscape of plants. Science 320: 489-492.
    • (2008) Science , vol.320 , pp. 489-492
    • Zhang, X.1
  • 14
    • 2942598781 scopus 로고    scopus 로고
    • Epialleles via DNA methylation: Consequences for plant evolution
    • Kalisz S, Purugganan M (2004) Epialleles via DNA methylation: consequences for plant evolution. Trends Ecol Evol 19: 309-314.
    • (2004) Trends Ecol Evol , vol.19 , pp. 309-314
    • Kalisz, S.1    Purugganan, M.2
  • 16
    • 33646885228 scopus 로고    scopus 로고
    • Arabidopsis displays centromeric DNA hypomethylation and cytological alterations of heterochro-matin upon attack by Pseudomonas syringae
    • Pavet V, Quintero C, Cecchini N, Rosa A, Alvarez M (2006) Arabidopsis displays centromeric DNA hypomethylation and cytological alterations of heterochro-matin upon attack by Pseudomonas syringae. Mol Plant Microbe Interact 19: 577-587.
    • (2006) Mol Plant Microbe Interact , vol.19 , pp. 577-587
    • Pavet, V.1    Quintero, C.2    Cecchini, N.3    Rosa, A.4    Alvarez, M.5
  • 17
    • 34248195475 scopus 로고    scopus 로고
    • The plant genomes methylation status and response to stress: Implications for plant improvement
    • Lukens L, Zhan S (2007) The plant genomes methylation status and response to stress: implications for plant improvement. Curr Opin Plant Biol 10: 317- 322.
    • (2007) Curr Opin Plant Biol , vol.10 , pp. 317-322
    • Lukens, L.1    Zhan, S.2
  • 19
    • 33646792917 scopus 로고    scopus 로고
    • Paleoenvironment interpretation of a 1760 years b.p. old sediment in a mangrove area of the bay of Guanabara, using pollen analysis
    • Barth O, So-Tihago L, Barros M (2006) Paleoenvironment interpretation of a 1760 years b.p. old sediment in a mangrove area of the bay of Guanabara, using pollen analysis. An Acad Bras Cienc 78: 227-229.
    • (2006) An Acad Bras Cienc , vol.78 , pp. 227-229
    • Barth, O.1    So-Tihago, L.2    Barros, M.3
  • 22
    • 0033005346 scopus 로고    scopus 로고
    • Patterns of cytosine methylation in an elite rice hybrid and its parental lines, detected by a methylation-sensitive amplification polymorphism technique
    • Xiong L, Xu C, Saghai-Maroof M, Zhang Q (1999) Patterns of cytosine methylation in an elite rice hybrid and its parental lines, detected by a methylation-sensitive amplification polymorphism technique. Mol Genet Genomics 261: 439-446.
    • (1999) Mol Genet Genomics , vol.261 , pp. 439-446
    • Xiong, L.1    Xu, C.2    Saghai-Maroof, M.3    Zhang, Q.4
  • 23
    • 0036456019 scopus 로고    scopus 로고
    • Analysis of DNA methylation in Arabidopsis thaliana based on methylation-sensitive AFLP markers
    • Cervera M, Ruiz-Garca L, Martnez-Zapater J (2002) Analysis of DNA methylation in Arabidopsis thaliana based on methylation-sensitive AFLP markers. Mol Genet Genomics 268: 543-552.
    • (2002) Mol Genet Genomics , vol.268 , pp. 543-552
    • Cervera, M.1    Ruiz-Garca, L.2    Martnez-Zapater, J.3
  • 24
    • 39449088572 scopus 로고    scopus 로고
    • Genome-wide approaches to studying chromatin modifications
    • Schones D, Zhao K (2008) Genome-wide approaches to studying chromatin modifications. Nat Rev Genet 9: 179-191.
    • (2008) Nat Rev Genet , vol.9 , pp. 179-191
    • Schones, D.1    Zhao, K.2
  • 25
    • 48849104642 scopus 로고    scopus 로고
    • Variation in DNA methylation patterns of grapevine somaclones (Vitis vinifera L.)
    • Schellenbaum P, Mohler V, Wenzel G, Walter B (2008) Variation in DNA methylation patterns of grapevine somaclones (Vitis vinifera L.). BMC Plant Biol 8: 78-87.
    • (2008) BMC Plant Biol , vol.8 , pp. 78-87
    • Schellenbaum, P.1    Mohler, V.2    Wenzel, G.3    Walter, B.4
  • 26
    • 1942520183 scopus 로고    scopus 로고
    • Search for methylation-sensitive amplification polymorphisms associated with the mantled variant phenotype in oil palm (Elaeis guineensis Jacq)
    • Jaligot E, Beul T, Baurens F, Billotte N, Rival A (2004) Search for methylation-sensitive amplification polymorphisms associated with the mantled variant phenotype in oil palm (Elaeis guineensis Jacq). Genome 47: 224-228.
    • (2004) Genome , vol.47 , pp. 224-228
    • Jaligot, E.1    Beul, T.2    Baurens, F.3    Billotte, N.4    Rival, A.5
  • 27
    • 16344367626 scopus 로고    scopus 로고
    • Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae)
    • Salmon A, Ainouche M, Wendel J (2005) Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae). Mol Ecol 14: 1163-1175.
    • (2005) Mol Ecol , vol.14 , pp. 1163-1175
    • Salmon, A.1    Ainouche, M.2    Wendel, J.3
  • 28
    • 15744372592 scopus 로고    scopus 로고
    • DNA methylation polymorphisms in rice and wild rice strains: Detection of epigenetic markers
    • Takata M, Kishima Y, Sano Y (2005) DNA methylation polymorphisms in rice and wild rice strains: detection of epigenetic markers. Breed Sci 55: 57-63.
    • (2005) Breed Sci , vol.55 , pp. 57-63
    • Takata, M.1    Kishima, Y.2    Sano, Y.3
  • 29
    • 34248145207 scopus 로고    scopus 로고
    • Infraspecific DNA methylation polymorphism in cotton (Gossypium hirsutum L.)
    • Keyte A, Percifield R, Liu B, Wendel J (2006) Infraspecific DNA methylation polymorphism in cotton (Gossypium hirsutum L.). J Hered 97: 444-450.
    • (2006) J Hered , vol.97 , pp. 444-450
    • Keyte, A.1    Percifield, R.2    Liu, B.3    Wendel, J.4
  • 30
    • 34047168659 scopus 로고    scopus 로고
    • Epigenetic inheritance and variation of DNA methylation level and pattern in maize intra-specific hybrids
    • Zhao X, Chai Y, Liu B (2007) Epigenetic inheritance and variation of DNA methylation level and pattern in maize intra-specific hybrids. Plant Sci 172: 930-938.
    • (2007) Plant Sci , vol.172 , pp. 930-938
    • Zhao, X.1    Chai, Y.2    Liu, B.3
  • 31
    • 77950959077 scopus 로고    scopus 로고
    • Impact of transposable elements on the organization and function of allopolyploid genomes
    • in press
    • Parisod C, Alix K, Just J, Petit M, Sarilar V, et al. (2010) Impact of transposable elements on the organization and function of allopolyploid genomes. New Phytol, in press.
    • (2010) New Phytol
    • Parisod, C.1    Alix, K.2    Just, J.3    Petit, M.4    Sarilar, V.5
  • 33
    • 0034901448 scopus 로고    scopus 로고
    • Detection of DNA methylation changes in micropropagated banana plants using methylation-sensitive amplification polymorphism (MSAP)
    • Peraza-Echeverria S, Herrera-Valencia V, Kay A (2001) Detection of DNA methylation changes in micropropagated banana plants using methylation-sensitive amplification polymorphism (MSAP). Plant Sci 161: 359-367.
    • (2001) Plant Sci , vol.161 , pp. 359-367
    • Peraza-Echeverria, S.1    Herrera-Valencia, V.2    Kay, A.3
  • 35
    • 0031545391 scopus 로고    scopus 로고
    • LAI and leaf size differences in two red mangrove forest types in south Florida
    • Araújo R, Jaramillo J, Snedaker S (1997) LAI and leaf size differences in two red mangrove forest types in south Florida. Bull Mar Sci 60: 643-647.
    • (1997) Bull Mar Sci , vol.60 , pp. 643-647
    • Araújo, R.1    Jaramillo, J.2    Snedaker, S.3
  • 36
    • 12544254467 scopus 로고    scopus 로고
    • DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes
    • Tran R, Henikoff J, Zilberman D, Ditt R, Jacobsen S, et al. (2005) DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes. Curr Biol 15: 154-159.
    • (2005) Curr Biol , vol.15 , pp. 154-159
    • Tran, R.1    Henikoff, J.2    Zilberman, D.3    Ditt, R.4    Jacobsen, S.5
  • 37
    • 0036810094 scopus 로고    scopus 로고
    • Epi-alleles in plants: Inheritance of epigenetic information over generations
    • Kakutani T (2002) Epi-alleles in plants: Inheritance of epigenetic information over generations. Plant Cell Physiol 43: 1106-1111.
    • (2002) Plant Cell Physiol , vol.43 , pp. 1106-1111
    • Kakutani, T.1
  • 38
    • 62349111195 scopus 로고    scopus 로고
    • Epigenetic regulation of stress responses in plants
    • Chinnusamy V, Zhu JK (2009) Epigenetic regulation of stress responses in plants. Curr Opin Plant Biol 12: 133-139.
    • (2009) Curr Opin Plant Biol , vol.12 , pp. 133-139
    • Chinnusamy, V.1    Zhu, J.K.2
  • 39
    • 62349088361 scopus 로고    scopus 로고
    • Phenotypic instability and epigenetic variability in a diploid potato of hybrid origin, Solanum ruiz-lealii
    • Marfil C, Camadro E, Masuelli R (2009) Phenotypic instability and epigenetic variability in a diploid potato of hybrid origin, Solanum ruiz-lealii. BMC Plant Biol 9: 21-37.
    • (2009) BMC Plant Biol , vol.9 , pp. 21-37
    • Marfil, C.1    Camadro, E.2    Masuelli, R.3
  • 40
    • 0033824241 scopus 로고    scopus 로고
    • Plant DNA methyltransferases
    • Finnegan E, Kovac K (2000) Plant DNA methyltransferases. Plant Mol Biol 43: 189-201.
    • (2000) Plant Mol Biol , vol.43 , pp. 189-201
    • Finnegan, E.1    Kovac, K.2
  • 41
    • 0030857543 scopus 로고    scopus 로고
    • DNA methylation and plant development
    • Richards E (1997) DNA methylation and plant development. Trends Genet 13: 319-323.
    • (1997) Trends Genet , vol.13 , pp. 319-323
    • Richards, E.1
  • 42
    • 29144499987 scopus 로고    scopus 로고
    • Epigenetics and its implications for plant biology 2. The epigenetic epiphany: Epigenetics, evolution and beyond
    • Grant-Downton R, Dickinson H (2006) Epigenetics and its implications for plant biology 2. The epigenetic epiphany: Epigenetics, evolution and beyond. Ann Bot 97: 11-27.
    • (2006) Ann Bot , vol.97 , pp. 11-27
    • Grant-Downton, R.1    Dickinson, H.2
  • 43
    • 26044457918 scopus 로고    scopus 로고
    • A multivariate study of mangrove morphology (Rhizophora mangle) using both above and below-water plant architecture
    • Brooks R, Bell S (2005) A multivariate study of mangrove morphology (Rhizophora mangle) using both above and below-water plant architecture. Estuar Coast Shelf Sci 65: 440-448.
    • (2005) Estuar Coast Shelf Sci , vol.65 , pp. 440-448
    • Brooks, R.1    Bell, S.2
  • 44
    • 77956412353 scopus 로고    scopus 로고
    • R Foundation for Statistical Computing, Vienna, Austria R version 2.6.0
    • R Foundation for Statistical Computing, Vienna, Austria R version 2.6.0. URL http://www.R-project.org.
  • 45
    • 0031744869 scopus 로고    scopus 로고
    • High genetic differentiation among remnant populations of the endangered Caesalpinia echinata Lam
    • Leguminosae Caesalpinioideae
    • Cardoso M, Provan J, Powell W, Ferreira P, de Oliveira D (1998) High genetic differentiation among remnant populations of the endangered Caesalpinia echinata Lam. (Leguminosae Caesalpinioideae). Mol Ecol 7: 601-608.
    • (1998) Mol Ecol , vol.7 , pp. 601-608
    • Cardoso, M.1    Provan, J.2    Powell, W.3    Ferreira, P.4    de Oliveira, D.5
  • 47
    • 7044264955 scopus 로고    scopus 로고
    • How to track and assess genotyping errors in population genetics studies
    • Bonin A, Bellemain E, Broken Eidesen P, Pompanon F, Brochmann C, et al. (2004) How to track and assess genotyping errors in population genetics studies. Mol Ecol 13: 3261-3273.
    • (2004) Mol Ecol , vol.13 , pp. 3261-3273
    • Bonin, A.1    Bellemain, E.2    Broken, E.P.3    Pompanon, F.4    Brochmann, C.5
  • 48
    • 34548570134 scopus 로고    scopus 로고
    • Statistical analysis of amplified fragment length polymorphism data: A toolbox for molecular ecologists and evolutionists
    • Bonin A, Ehrich D, Manel S (2007) Statistical analysis of amplified fragment length polymorphism data: a toolbox for molecular ecologists and evolutionists. Mol Ecol 16: 3737-3758.
    • (2007) Mol Ecol , vol.16 , pp. 3737-3758
    • Bonin, A.1    Ehrich, D.2    Manel, S.3
  • 49
    • 41149179541 scopus 로고    scopus 로고
    • Genome-wide association to fine-scale ecological heterogeneity within a continuous population of Biscutella laevigata (Brassicaceae)
    • Parisod C, Christin PA (2008) Genome-wide association to fine-scale ecological heterogeneity within a continuous population of Biscutella laevigata (Brassicaceae). New Phytol 178: 436-447.
    • (2008) New Phytol , vol.178 , pp. 436-447
    • Parisod, C.1    Christin, P.A.2
  • 50
    • 0033061722 scopus 로고    scopus 로고
    • The distribution of random amplified polymorphic DNA (RAPD) diversity amongst populations of Isotoma petraea (Lobeliaceae)
    • Bussel J (1999) The distribution of random amplified polymorphic DNA (RAPD) diversity amongst populations of Isotoma petraea (Lobeliaceae). Mol Ecol 8: 775-789.
    • (1999) Mol Ecol , vol.8 , pp. 775-789
    • Bussel, J.1
  • 51
    • 0000625869 scopus 로고
    • Analyzing tables of statistical tests
    • Rice W (1989) Analyzing tables of statistical tests. Evol 43: 223-225.
    • (1989) Evol , vol.43 , pp. 223-225
    • Rice, W.1
  • 52
    • 0001878986 scopus 로고    scopus 로고
    • Ade-4: A multivariate analysis and graphical display software
    • Thioulouse J, Chessel D, Doldec S, Olivier J (1996) Ade-4: a multivariate analysis and graphical display software. Stat Comput 7: 75-83.
    • (1996) Stat Comput , vol.7 , pp. 75-83
    • Thioulouse, J.1    Chessel, D.2    Doldec, S.3    Olivier, J.4
  • 54
    • 84977421344 scopus 로고
    • Co-inertia analysis: An alternative method for studying species-environment relationships
    • Doldec S, Chessel D (1994) Co-inertia analysis: an alternative method for studying species-environment relationships. Freshw Biol 31: 277-294.
    • (1994) Freshw Biol , vol.31 , pp. 277-294
    • Doldec, S.1    Chessel, D.2
  • 55
    • 0035983456 scopus 로고    scopus 로고
    • A bayesian approach to inferring population structure from dominant markers
    • Holsinger K, Lewis P, Dey D (2002) A bayesian approach to inferring population structure from dominant markers. Mol Ecol 11: 1157-1164.
    • (2002) Mol Ecol , vol.11 , pp. 1157-1164
    • Holsinger, K.1    Lewis, P.2    Dey, D.3
  • 56
    • 36048938355 scopus 로고    scopus 로고
    • Do inbreeding depression and relative male fitness explain the maintenance of androdioecy in white mangrove, Laguncularia racemosa (Combretaceae)?
    • Landry C, Rathcke B (2007) Do inbreeding depression and relative male fitness explain the maintenance of androdioecy in white mangrove, Laguncularia racemosa (Combretaceae)? New Phytol 176: 891-901.
    • (2007) New Phytol , vol.176 , pp. 891-901
    • Landry, C.1    Rathcke, B.2


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