-
1
-
-
0041843750
-
An integrated model of epidermal growth factor receptor trafficking and signal transduction
-
Resat H, Ewald JA, Dixon DA, Wiley HS, (2003) An integrated model of epidermal growth factor receptor trafficking and signal transduction. Biophys J 85: 730-743.
-
(2003)
Biophys J
, vol.85
, pp. 730-743
-
-
Resat, H.1
Ewald, J.A.2
Dixon, D.A.3
Wiley, H.S.4
-
2
-
-
34347355576
-
Cell surface receptors for signal transduction and ligand transport: a design principles study
-
Shankaran H, Resat H, Wiley HS, (2007) Cell surface receptors for signal transduction and ligand transport: a design principles study. PLoS Comput Biol 3: e101.
-
(2007)
PLoS Comput Biol
, vol.3
-
-
Shankaran, H.1
Resat, H.2
Wiley, H.S.3
-
3
-
-
77951977456
-
The role of asymmetric binding in ligand-receptor systems with 1:2 interaction ratio
-
Miguez DG, (2010) The role of asymmetric binding in ligand-receptor systems with 1:2 interaction ratio. Biophys Chem 148: 74-81.
-
(2010)
Biophys Chem
, vol.148
, pp. 74-81
-
-
Miguez, D.G.1
-
4
-
-
84881147996
-
A mathematical model for the rational design of chimeric ligands in selective drug therapies
-
Doldan-Martelli V, Guantes R, Miguez DG, (2013) A mathematical model for the rational design of chimeric ligands in selective drug therapies. CPT: Pharmacomet Syst Pharmacol 2: e26.
-
(2013)
CPT: Pharmacomet Syst Pharmacol
, vol.2
-
-
Doldan-Martelli, V.1
Guantes, R.2
Miguez, D.G.3
-
6
-
-
18744411546
-
Free energies of ligand binding for structurally diverse compounds
-
Oostenbrink C, van Gunsteren WF, (2005) Free energies of ligand binding for structurally diverse compounds. Proc Natl Acad Sci U S A 102: 6750-6754.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 6750-6754
-
-
Oostenbrink, C.1
van Gunsteren, W.F.2
-
7
-
-
0346458810
-
Free energies of binding of polychlorinated biphenyls to the estrogen receptor from a single simulation
-
Oostenbrink C, van Gunsteren WF, (2004) Free energies of binding of polychlorinated biphenyls to the estrogen receptor from a single simulation. Proteins 54: 237-246.
-
(2004)
Proteins
, vol.54
, pp. 237-246
-
-
Oostenbrink, C.1
van Gunsteren, W.F.2
-
8
-
-
84871372056
-
A molecular dynamics approach to ligand-receptor interaction in the aspirin-human serum albumin complex
-
Alvarez HA, McCarthy AN, Grigera JR, (2012) A molecular dynamics approach to ligand-receptor interaction in the aspirin-human serum albumin complex. Journal of Biophysics 2012: 642745.
-
(2012)
Journal of Biophysics
, vol.2012
, pp. 642745
-
-
Alvarez, H.A.1
McCarthy, A.N.2
Grigera, J.R.3
-
9
-
-
18744372751
-
Calculation of absolute protein-ligand binding free energy from computer simulations
-
Woo HJ, Roux B, (2005) Calculation of absolute protein-ligand binding free energy from computer simulations. Proc Natl Acad Sci U S A 102: 6825-6830.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 6825-6830
-
-
Woo, H.J.1
Roux, B.2
-
10
-
-
84867684737
-
Hybrid molecular mechanics/coarse-grained simulations for structural prediction of g-protein coupled receptor/ligand complexes
-
Leguèbe M, Nguyen C, Capece L, Hoang Z, Giorgetti A, et al. (2012) Hybrid molecular mechanics/coarse-grained simulations for structural prediction of g-protein coupled receptor/ligand complexes. PLoS One 7: e47332.
-
(2012)
PLoS One
, vol.7
-
-
Leguèbe, M.1
Nguyen, C.2
Capece, L.3
Hoang, Z.4
Giorgetti, A.5
-
11
-
-
34548146523
-
G protein-coupled receptors self-assemble in dynamics simulations of model bilayers
-
Periole X, Huber T, Marrink SJ, Sakmar TP, (2007) G protein-coupled receptors self-assemble in dynamics simulations of model bilayers. J Am Chem Soc 129: 10126-10132.
-
(2007)
J Am Chem Soc
, vol.129
, pp. 10126-10132
-
-
Periole, X.1
Huber, T.2
Marrink, S.J.3
Sakmar, T.P.4
-
12
-
-
70349644436
-
Efficient simulation of ligand-receptor binding processes using the conformation dynamics approach
-
Bujotzek A, Weber M, (2009) Efficient simulation of ligand-receptor binding processes using the conformation dynamics approach. J Bioinform Comput Biol 7: 811-831.
-
(2009)
J Bioinform Comput Biol
, vol.7
, pp. 811-831
-
-
Bujotzek, A.1
Weber, M.2
-
13
-
-
0031408221
-
Stochastic simulation of ligand-receptor interaction
-
Veitl M, Schweiger U, Berger ML, (1997) Stochastic simulation of ligand-receptor interaction. Comput Biomed Res 30: 427-450.
-
(1997)
Comput Biomed Res
, vol.30
, pp. 427-450
-
-
Veitl, M.1
Schweiger, U.2
Berger, M.L.3
-
14
-
-
33747033205
-
Spatial modeling of dimerization reaction dynamics in the plasma membrane: Monte carlo vs. continuum differential equations
-
Mayawala K, Vlachos DG, Edwards JS, (2006) Spatial modeling of dimerization reaction dynamics in the plasma membrane: Monte carlo vs. continuum differential equations. Biophys Chem 121: 194-208.
-
(2006)
Biophys Chem
, vol.121
, pp. 194-208
-
-
Mayawala, K.1
Vlachos, D.G.2
Edwards, J.S.3
-
15
-
-
79953189445
-
Impact of receptor clustering on ligand binding
-
Caré BR, Soula H, (2011) Impact of receptor clustering on ligand binding. BMC Syst Biol 5: 48.
-
(2011)
BMC Syst Biol
, vol.5
, pp. 48
-
-
Caré, B.R.1
Soula, H.2
-
16
-
-
36849103820
-
Role of Repulsive Forces in Determining the Equilibrium Structure of Simple Liquids
-
Weeks JD, Chandler D, Andersen HC, (1971) Role of Repulsive Forces in Determining the Equilibrium Structure of Simple Liquids. J Chem Phys 54: 5237.
-
(1971)
J Chem Phys
, vol.54
, pp. 5237
-
-
Weeks, J.D.1
Chandler, D.2
Andersen, H.C.3
-
17
-
-
18644386251
-
Crystal structure of the complex of human epidermal growth factor and receptor extracellular domains
-
Ogiso H, Ishitani R, Nureki O, Fukai S, Yamanaka M, et al. (2002) Crystal structure of the complex of human epidermal growth factor and receptor extracellular domains. Cell 110: 775-787.
-
(2002)
Cell
, vol.110
, pp. 775-787
-
-
Ogiso, H.1
Ishitani, R.2
Nureki, O.3
Fukai, S.4
Yamanaka, M.5
-
19
-
-
0347193736
-
Reaction-rate theory: fifty years after kramer
-
Hänggi P, Talkner P, Borkovec M, (1990) Reaction-rate theory: fifty years after kramer. Rev Mod Phys 62: 251-341.
-
(1990)
Rev Mod Phys
, vol.62
, pp. 251-341
-
-
Hänggi, P.1
Talkner, P.2
Borkovec, M.3
-
20
-
-
0020199402
-
Role of diffusion in ligand binding to macromolecules and cell-bound receptors
-
Shoup D, Szabo A, (1982) Role of diffusion in ligand binding to macromolecules and cell-bound receptors. Biophys J 40: 33-9.
-
(1982)
Biophys J
, vol.40
, pp. 33-39
-
-
Shoup, D.1
Szabo, A.2
-
23
-
-
0028960497
-
Approximating the effects of diffusion on reversible reactions at the cell surface: ligand-receptor kinetics
-
Goldstein B, Dembo M, (1995) Approximating the effects of diffusion on reversible reactions at the cell surface: ligand-receptor kinetics. Biophys J 68: 1222-1230.
-
(1995)
Biophys J
, vol.68
, pp. 1222-1230
-
-
Goldstein, B.1
Dembo, M.2
-
25
-
-
15444364588
-
Simultaneous inhibition of epidermal growth factor receptor (EGFR) signaling and enhanced activation of tumor necrosis factor-related apoptosis-inducing ligand (TRAIL) receptor-mediated apoptosis induction by an scFv:sTRAIL fusion protein with specificity for human EGFR
-
Bremer E, Samplonius DF, van Genne L, Dijkstra MH, Kroesen BJ, et al. (2005) Simultaneous inhibition of epidermal growth factor receptor (EGFR) signaling and enhanced activation of tumor necrosis factor-related apoptosis-inducing ligand (TRAIL) receptor-mediated apoptosis induction by an scFv:sTRAIL fusion protein with specificity for human EGFR. The Journal of Biological Chemistry 280: 10025-10033.
-
(2005)
The Journal of Biological Chemistry
, vol.280
, pp. 10025-10033
-
-
Bremer, E.1
Samplonius, D.F.2
van Genne, L.3
Dijkstra, M.H.4
Kroesen, B.J.5
-
26
-
-
43749102294
-
Enhancement of cell type specificity by quantitative modulation of a chimeric ligand
-
Cironi P, Swinburne IA, Silver PA, (2008) Enhancement of cell type specificity by quantitative modulation of a chimeric ligand. J Biol Chem 283: 8469-8476.
-
(2008)
J Biol Chem
, vol.283
, pp. 8469-8476
-
-
Cironi, P.1
Swinburne, I.A.2
Silver, P.A.3
-
27
-
-
0035954950
-
Loops in proteins can be modeled as worm-like chains
-
Zhou HX, (2001) Loops in proteins can be modeled as worm-like chains. J Phys Chem B 105: 6763-6766.
-
(2001)
J Phys Chem B
, vol.105
, pp. 6763-6766
-
-
Zhou, H.X.1
-
29
-
-
34547397317
-
Chemomechanical mapping of ligand-receptor binding kinetics on cells
-
Lee S, Mandic J, Van Vliet KJ, (2007) Chemomechanical mapping of ligand-receptor binding kinetics on cells. Proc Natl Acad Sci U S A 104: 9609-14.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 9609-9614
-
-
Lee, S.1
Mandic, J.2
Van Vliet, K.J.3
-
30
-
-
0037038514
-
Effects of chain stiffness on the dynamics of loop formation in polypeptides. appendix: Testing a 1-dimensional diffusion model for peptide dynamics
-
Lapidus LJ, Steinbach PJ, Eaton WA, Szabo A, Hofrichter J, (2002) Effects of chain stiffness on the dynamics of loop formation in polypeptides. appendix: Testing a 1-dimensional diffusion model for peptide dynamics. J Phys Chem B 106: 11628-11640.
-
(2002)
J Phys Chem B
, vol.106
, pp. 11628-11640
-
-
Lapidus, L.J.1
Steinbach, P.J.2
Eaton, W.A.3
Szabo, A.4
Hofrichter, J.5
-
31
-
-
24944566299
-
Speed up of dynamic observables in coarse-grained moleculardynamics simulations of unentangled polymers
-
Depa PK, Maranas JK, (2005) Speed up of dynamic observables in coarse-grained moleculardynamics simulations of unentangled polymers. J Chem Phys 123: 94901.
-
(2005)
J Chem Phys
, vol.123
, pp. 94901
-
-
Depa, P.K.1
Maranas, J.K.2
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