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Volumn 24, Issue 10, 2013, Pages 819-839

Docking-based CoMFA and CoMSIA study of azaindole carboxylic acid derivatives as promising HIV-1 integrase inhibitors

Author keywords

3D QSAR; azaindole carboxylic acid derivatives; CoMFA; CoMSIA; docking; HIV 1 integrase inhibitors

Indexed keywords

BINDING ENERGY; CARBOXYLIC ACIDS; COMPUTATIONAL CHEMISTRY; HYDROGEN BONDS; MOLECULES;

EID: 84888015543     PISSN: 1062936X     EISSN: 1029046X     Source Type: Journal    
DOI: 10.1080/1062936X.2013.820792     Document Type: Article
Times cited : (8)

References (41)
  • 1
    • 77955612452 scopus 로고    scopus 로고
    • HIV-1 integrase inhibitors: 2007-2008 update
    • Ramkumar, K., Serrao, E., Odde, S. and Neamati, N. 2010. HIV-1 integrase inhibitors: 2007-2008 update. Med. Res. Rev., 30: 890 - 954.
    • (2010) Med. Res. Rev. , vol.30 , pp. 890-954
    • Ramkumar, K.1    Serrao, E.2    Odde, S.3    Neamati, N.4
  • 2
    • 84858256291 scopus 로고    scopus 로고
    • Diketoacid inhibitors of HIV-1 integrase: From L-708,906 to raltegravir and beyond
    • Beare, K.D., Coster, M.J. and Rutledge, P.J. 2012. Diketoacid inhibitors of HIV-1 integrase: From L-708,906 to raltegravir and beyond. Curr. Med. Chem., 19: 1177 - 1192.
    • (2012) Curr. Med. Chem. , vol.19 , pp. 1177-1192
    • Beare, K.D.1    Coster, M.J.2    Rutledge, P.J.3
  • 3
    • 80052532608 scopus 로고    scopus 로고
    • Synthesis and HIV-1 integrase inhibitory activity of furanone derivatives
    • Yu, S., Zhao, S., Liu, C., Zhong, Y. and Zhao, G. 2010. Synthesis and HIV-1 integrase inhibitory activity of furanone derivatives. Chem. Res. Chin. Univ., 26: 225 - 229.
    • (2010) Chem. Res. Chin. Univ. , vol.26 , pp. 225-229
    • Yu, S.1    Zhao, S.2    Liu, C.3    Zhong, Y.4    Zhao, G.5
  • 5
    • 21244440702 scopus 로고    scopus 로고
    • Anti-HIV activities of natural antioxidant caffeic acid derivatives: Toward an antiviral supplementation diet
    • Bailly, F. and Cotelle, P. 2005. Anti-HIV activities of natural antioxidant caffeic acid derivatives: Toward an antiviral supplementation diet. Curr. Med. Chem., 12: 1811 - 1818.
    • (2005) Curr. Med. Chem. , vol.12 , pp. 1811-1818
    • Bailly, F.1    Cotelle, P.2
  • 10
    • 84870415900 scopus 로고    scopus 로고
    • Development of polyphenols as HIV-1 integrase inhibitors: A summary and perspective
    • Yu, S. and Zhao, G. 2012. Development of polyphenols as HIV-1 integrase inhibitors: A summary and perspective. Curr. Med. Chem., 19: 5536 - 5561.
    • (2012) Curr. Med. Chem. , vol.19 , pp. 5536-5561
    • Yu, S.1    Zhao, G.2
  • 11
    • 0037162715 scopus 로고    scopus 로고
    • HIV-1 integration in the human genome favors active genes and local hotspots
    • Schroder, A.R., Shinn, P., Chen, H., Berry, C., Ecker, J.R. and Bushman, F. 2002. HIV-1 integration in the human genome favors active genes and local hotspots. Cell, 110: 521 - 529.
    • (2002) Cell , vol.110 , pp. 521-529
    • Schroder, A.R.1    Shinn, P.2    Chen, H.3    Berry, C.4    Ecker, J.R.5    Bushman, F.6
  • 12
    • 34447548922 scopus 로고    scopus 로고
    • HIV integrase inhibitors as therapeutic agents in AIDS
    • Nair, V. and Chi, G. 2007. HIV integrase inhibitors as therapeutic agents in AIDS. Rev. Med. Virol., 17: 277 - 295.
    • (2007) Rev. Med. Virol. , vol.17 , pp. 277-295
    • Nair, V.1    Chi, G.2
  • 13
    • 34547108566 scopus 로고    scopus 로고
    • New developments in diketo-containing inhibitors of HIV-1 integrase
    • Zhao, G., Wang, C., Liu, C. and Lou, H. 2007. New developments in diketo-containing inhibitors of HIV-1 integrase. Mini-Rev. Med. Chem., 7: 707 - 725.
    • (2007) Mini-Rev. Med. Chem. , vol.7 , pp. 707-725
    • Zhao, G.1    Wang, C.2    Liu, C.3    Lou, H.4
  • 14
    • 84866094356 scopus 로고    scopus 로고
    • Nitrogen-containing polyhydroxylated aromatics as HIV-1 integrase inhibitors: Synthesis, structure-activity relationship analysis, and biological activity
    • Yu, S., Zhang, L., Yan, S., Wang, P., Sanchez, T., Christ, F., Debyser, Z., Neamati, N. and Zhao, G. 2012. Nitrogen-containing polyhydroxylated aromatics as HIV-1 integrase inhibitors: Synthesis, structure-activity relationship analysis, and biological activity. J. Enzyme Inhib. Med. Chem., 27: 628 - 640.
    • (2012) J. Enzyme Inhib. Med. Chem. , vol.27 , pp. 628-640
    • Yu, S.1    Zhang, L.2    Yan, S.3    Wang, P.4    Sanchez, T.5    Christ, F.6    Debyser, Z.7    Neamati, N.8    Zhao, G.9
  • 15
    • 44449155764 scopus 로고    scopus 로고
    • Mutations in human immunodeficiency virus type 1 integrase confer resistance to the naphthyridine L-870,810 and cross-resistance to the clinical trial drug GS-9137
    • Hombrouck, A., Voet, A., Van Remoortel, B., Desadeleer, C., De Maeyer, M., Debyser, Z. and Witvrouw, M. 2008. Mutations in human immunodeficiency virus type 1 integrase confer resistance to the naphthyridine L-870,810 and cross-resistance to the clinical trial drug GS-9137. Antimicrob. Agents Chemother., 52: 2069 - 2078.
    • (2008) Antimicrob. Agents Chemother. , vol.52 , pp. 2069-2078
    • Hombrouck, A.1    Voet, A.2    Van Remoortel, B.3    Desadeleer, C.4    De Maeyer, M.5    Debyser, Z.6    Witvrouw, M.7
  • 17
    • 63549089353 scopus 로고    scopus 로고
    • Raltegravir, elvitegravir, and metoogravir: The birth of 'me-too' HIV-1 integrase inhibitors
    • Serrao, E., Odde, S., Ramkumar, K. and Neamati, N. 2009. Raltegravir, elvitegravir, and metoogravir: The birth of 'me-too' HIV-1 integrase inhibitors. Retrovirology, 6: 25 doi: 10.1186/1742-4690-6-25
    • (2009) Retrovirology , vol.6 , pp. 25
    • Serrao, E.1    Odde, S.2    Ramkumar, K.3    Neamati, N.4
  • 18
    • 70349766723 scopus 로고    scopus 로고
    • Docking-based 3D-QSAR study of HIV-1 integrase inhibitors
    • Gupta, P., Roy, N. and Garg, P. 2009. Docking-based 3D-QSAR study of HIV-1 integrase inhibitors. Eur. J. Med. Chem., 44: 4276 - 4287.
    • (2009) Eur. J. Med. Chem. , vol.44 , pp. 4276-4287
    • Gupta, P.1    Roy, N.2    Garg, P.3
  • 19
    • 77955560073 scopus 로고    scopus 로고
    • QSAR study of carboxylic acid derivatives as HIV-1 Integrase inhibitors
    • Cheng, Z., Zhang, Y. and Fu, W. 2010. QSAR study of carboxylic acid derivatives as HIV-1 Integrase inhibitors. Eur. J. Med. Chem., 45: 3970 - 3980.
    • (2010) Eur. J. Med. Chem. , vol.45 , pp. 3970-3980
    • Cheng, Z.1    Zhang, Y.2    Fu, W.3
  • 20
    • 79151481013 scopus 로고    scopus 로고
    • HIV-1 integrase strand-transfer inhibitors: Design, synthesis and molecular modeling investigation
    • De Luca, L., De Grazia, S., Ferro, S., Gitto, R., Christ, F., Debyser, Z. and Chimirri, A. 2011. HIV-1 integrase strand-transfer inhibitors: Design, synthesis and molecular modeling investigation. Eur. J. Med. Chem., 46: 756 - 764.
    • (2011) Eur. J. Med. Chem. , vol.46 , pp. 756-764
    • De Luca, L.1    De Grazia, S.2    Ferro, S.3    Gitto, R.4    Christ, F.5    Debyser, Z.6    Chimirri, A.7
  • 21
    • 80051591469 scopus 로고    scopus 로고
    • Comparative docking and CoMFA analysis of curcumine derivatives as HIV-1 integrase inhibitors
    • Gupta, P., Garg, P. and Roy, N. 2011. Comparative docking and CoMFA analysis of curcumine derivatives as HIV-1 integrase inhibitors. Mol. Diversity, 15: 733 - 750.
    • (2011) Mol. Diversity , vol.15 , pp. 733-750
    • Gupta, P.1    Garg, P.2    Roy, N.3
  • 22
    • 79952441600 scopus 로고    scopus 로고
    • Synthesis, biological evaluation and 3D-QSAR studies of 3-keto salicylic acid chalcones and related amides as novel HIV-1 integrase inhibitors
    • Sharma, H., Patil, S., Sanchez, T.W., Neamati, N., Schinazi, R.F. and Buolamwini, J.K. 2011. Synthesis, biological evaluation and 3D-QSAR studies of 3-keto salicylic acid chalcones and related amides as novel HIV-1 integrase inhibitors. Bioorg. Med. Chem., 19: 2030 - 2045.
    • (2011) Bioorg. Med. Chem. , vol.19 , pp. 2030-2045
    • Sharma, H.1    Patil, S.2    Sanchez, T.W.3    Neamati, N.4    Schinazi, R.F.5    Buolamwini, J.K.6
  • 23
    • 84869406403 scopus 로고    scopus 로고
    • 3D-QSAR studies of quinoline ring derivatives as HIV-1 integrase inhibitors
    • Sun, X.H., Guan, J.Q., Tan, J.J., Liu, C. and Wang, C.X. 2012. 3D-QSAR studies of quinoline ring derivatives as HIV-1 integrase inhibitors. SAR QSAR Environ. Res., 23: 683 - 703.
    • (2012) SAR QSAR Environ. Res. , vol.23 , pp. 683-703
    • Sun, X.H.1    Guan, J.Q.2    Tan, J.J.3    Liu, C.4    Wang, C.X.5
  • 26
    • 77954310405 scopus 로고    scopus 로고
    • CoMFA and CoMSIA 3D-QSAR studies on quionolone caroxylic acid derivatives inhibitors of HIV-1 integrase
    • Lu, P., Wei, X. and Zhang, R. 2010. CoMFA and CoMSIA 3D-QSAR studies on quionolone caroxylic acid derivatives inhibitors of HIV-1 integrase. Eur. J. Med. Chem., 45: 3413 - 3419.
    • (2010) Eur. J. Med. Chem. , vol.45 , pp. 3413-3419
    • Lu, P.1    Wei, X.2    Zhang, R.3
  • 27
    • 84857587645 scopus 로고    scopus 로고
    • Homology model-guided 3D-QSAR studies of HIV-1 integrase inhibitors
    • Sharma, H., Cheng, X. and Buolamwini, J.K. 2012. Homology model-guided 3D-QSAR studies of HIV-1 integrase inhibitors. J. Chem. Inf. Model., 52: 515 - 544.
    • (2012) J. Chem. Inf. Model. , vol.52 , pp. 515-544
    • Sharma, H.1    Cheng, X.2    Buolamwini, J.K.3
  • 28
    • 34047130148 scopus 로고    scopus 로고
    • A novel range based QSAR study of human neuropeptide Y (NPY) Y5 receptor inhibitors
    • Deswal, S. and Roy, N. 2007. A novel range based QSAR study of human neuropeptide Y (NPY) Y5 receptor inhibitors. Eur. J. Med. Chem., 42: 463 - 470.
    • (2007) Eur. J. Med. Chem. , vol.42 , pp. 463-470
    • Deswal, S.1    Roy, N.2
  • 30
    • 77949365510 scopus 로고    scopus 로고
    • Retroviral intasome assembly and inhibition of DNA strand transfer
    • Hare, S., Gupta, S.S., Valkov, E., Engelman, A. and Cherepanov, P. 2010. Retroviral intasome assembly and inhibition of DNA strand transfer. Nature, 464: 232 - 236.
    • (2010) Nature , vol.464 , pp. 232-236
    • Hare, S.1    Gupta, S.S.2    Valkov, E.3    Engelman, A.4    Cherepanov, P.5
  • 32
    • 0027672324 scopus 로고
    • Sample-distance partial least squares: PLS optimized for many variables, with application to CoMFA
    • Bush, B.L. and Nachbar, R.B. Jr. 1993. Sample-distance partial least squares: PLS optimized for many variables, with application to CoMFA. J. Comput. Aided Mol. Des., 7: 587 - 619.
    • (1993) J. Comput. Aided Mol. Des. , vol.7 , pp. 587-619
    • Bush, B.L.1    Nachbar Jr., R.B.2
  • 33
    • 0027209171 scopus 로고
    • The probability of chance correlation using partial least squares (PLS)
    • Clark, M. and Cramer, R.D. III. 1993. The probability of chance correlation using partial least squares (PLS). Quant. Struct-Act. Relat., 12: 137 - 145.
    • (1993) Quant. Struct-Act. Relat. , vol.12 , pp. 137-145
    • Clark, M.1    Cramer III, R.D.2
  • 34
    • 0034089732 scopus 로고    scopus 로고
    • QSAR and CoMFA: A perspective on the practical application to drug discovery
    • Podlogar, B.L. and Ferguson, D.M. 2000. QSAR and CoMFA: A perspective on the practical application to drug discovery. Drug Des. Discovery, 17: 4 - 12.
    • (2000) Drug Des. Discovery , vol.17 , pp. 4-12
    • Podlogar, B.L.1    Ferguson, D.M.2
  • 35
    • 0027944195 scopus 로고
    • Molecular similarity indices in a comparative analysis (CoMSIA) of drug molecules to correlate and predict their biological activity
    • Klebe, G., Abraham, U. and Mietzner, T. 1994. Molecular similarity indices in a comparative analysis (CoMSIA) of drug molecules to correlate and predict their biological activity. J. Med. Chem., 37: 4130 - 4146.
    • (1994) J. Med. Chem. , vol.37 , pp. 4130-4146
    • Klebe, G.1    Abraham, U.2    Mietzner, T.3
  • 36
    • 0037920567 scopus 로고    scopus 로고
    • Three-dimensional quantitative structure-activity relationship analyses using comparative molecular field analysis and comparative molecular similarity indices analysis to elucidate selectivity differences of inhibitors binding to trypsin, thrombin, and factor Xa
    • M. Bohm, J. St rzebecher, and G. Klebe, Three-dimensional quantitative structure-activity relationship analyses using comparative molecular field analysis and comparative molecular similarity indices analysis to elucidate selectivity differences of inhibitors binding to trypsin, thrombin, and factor Xa, J. Med. Chem. 42 (1999), pp. 458-477.
    • (1999) J. Med. Chem. , vol.42 , pp. 458-477
    • Bohm, M.1    St Rzebecher, J.2    Klebe, G.3
  • 37
    • 0037208267 scopus 로고    scopus 로고
    • 3D QSAR investigations on antimalarial naphthylisoquinoline alkaloids by comparative molecular similarity indices analysis (CoMSIA), based on different alignment approaches
    • Bringmann, G. and Rummey, C. 2003. 3D QSAR investigations on antimalarial naphthylisoquinoline alkaloids by comparative molecular similarity indices analysis (CoMSIA), based on different alignment approaches. J. Chem. Inf. Comput. Sci., 43: 304 - 316.
    • (2003) J. Chem. Inf. Comput. Sci. , vol.43 , pp. 304-316
    • Bringmann, G.1    Rummey, C.2
  • 39
    • 8844247763 scopus 로고    scopus 로고
    • Active site binding modes of the beta-diketoacids: A multi-active site approach in HIV-1 integrase inhibitor design
    • Dayam, R. and Neamati, N. 2004. Active site binding modes of the beta-diketoacids: A multi-active site approach in HIV-1 integrase inhibitor design. Bioorg. Med. Chem., 12: 6371 - 6381.
    • (2004) Bioorg. Med. Chem. , vol.12 , pp. 6371-6381
    • Dayam, R.1    Neamati, N.2
  • 40
    • 77953293159 scopus 로고    scopus 로고
    • Scaffold rearrangement of dihydroxypyrimidine inhibitors of HIV integrase: Docking model revisited
    • Tang, J., Maddali, K., Pommier, Y., Sham, Y.Y. and Wang, Z. 2010. Scaffold rearrangement of dihydroxypyrimidine inhibitors of HIV integrase: Docking model revisited. Bioorg. Med. Chem. Lett., 20: 3275 - 3279.
    • (2010) Bioorg. Med. Chem. Lett. , vol.20 , pp. 3275-3279
    • Tang, J.1    Maddali, K.2    Pommier, Y.3    Sham, Y.Y.4    Wang, Z.5
  • 41
    • 79961170232 scopus 로고    scopus 로고
    • Design of HIV-1 integrase inhibitors targeting the catalytic domain as well as its interaction with LEDGF/p75: A scaffold hopping approach using salicylate and catechol groups
    • Fan, X., Zhang, F.H., Al-Safi, R.I., Zeng, L.F., Shabaik, Y., Debnath, B., Sanchez, T.W., Odde, S., Neamati, N. and Long, Y.Q. 2011. Design of HIV-1 integrase inhibitors targeting the catalytic domain as well as its interaction with LEDGF/p75: A scaffold hopping approach using salicylate and catechol groups. Bioorg. Med. Chem., 19: 4935 - 4952.
    • (2011) Bioorg. Med. Chem. , vol.19 , pp. 4935-4952
    • Fan, X.1    Zhang, F.H.2    Al-Safi, R.I.3    Zeng, L.F.4    Shabaik, Y.5    Debnath, B.6    Sanchez, T.W.7    Odde, S.8    Neamati, N.9    Long, Y.Q.10


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