Compressed sensing reconstruction improves sensitivity of variable density spiral fMRI

Magnetic Resonance in Medicine

Volumn 70, Issue 6, 2013, Pages 1634-1643

  Holland, D J ^a   Liu, C ^b   Song, X ^b   Mazerolle, E L ^b,c   Stevens, M T ^b,c   Sederman, A J ^a   Gladden, L F ^a   D'Arcy, R C N ^b,c   Bowen, C V ^b,c   Beyea, S D ^b,c  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^b NATIONAL RESEARCH COUNCIL CANADA   (Canada)

^c DALHOUSIE UNIVERSITY   (Canada)

Author keywords

compressed sensing; fMRI; spiral; variable density

Indexed keywords

BRAIN; BRAIN MAPPING; MAGNETIC RESONANCE IMAGING;

ARCHIMEDEAN SPIRAL; BLOOD OXYGEN LEVEL DEPENDENTS; COMPRESSIVE SENSING; FMRI; FUNCTIONAL MRI (FMRI); SPATIAL DISTORTION; SPIRAL; VARIABLE DENSITY;

COMPRESSED SENSING;

ADULT; ARTICLE; ARTIFACT; BRAIN MAPPING; COMPARATIVE STUDY; COMPRESSED SENSING; COMPRESSION; COMPUTER PROGRAM; CONTRAST ENHANCEMENT; CONTRAST SENSITIVITY; DENSITY GRADIENT; FEMALE; FUNCTIONAL MAGNETIC RESONANCE IMAGING; HUMAN; HUMAN EXPERIMENT; IMAGE QUALITY; IMAGE RECONSTRUCTION; MALE; NORMAL HUMAN; NUCLEAR MAGNETIC RESONANCE SCANNER; TIME LAPSE IMAGING;

COMPRESSED SENSING; FMRI; SPIRAL; VARIABLE-DENSITY;

ALGORITHMS; BRAIN MAPPING; CEREBRAL CORTEX; DATA COMPRESSION; EVOKED POTENTIALS; HUMANS; IMAGE ENHANCEMENT; IMAGE INTERPRETATION, COMPUTER-ASSISTED; MAGNETIC RESONANCE IMAGING; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY;

EID: 84888013720     PISSN: 07403194     EISSN: 15222594     Source Type: Journal    
DOI: 10.1002/mrm.24621     Document Type: Article

References (57)

1. Norris DG,. High field human imaging. J Magn Reson Imaging 2003; 18: 519-529.
2. Norris DG,. Principles of magnetic resonance assessment of brain function. J Magn Reson Imaging 2006; 23: 794-807.
3. Feinberg DA, Yacoub E,. The rapid development of high speed, resolution and precision in fMRI. Neuroimage 2012; 62: 720-725.
4. Hennig J, Speck O, Koch M, Weiller C,. Functional magnetic resonance imaging: a review of methodological aspects and clinical applications. J Magn Reson Imaging 2003; 18: 1-15.
5. Walter M, Stadler J, Tempelmann C, Speck O, Northoff G,. High resolution fMRI of subcortical regions during visual erotic stimulation at 7 T. Magn Reson Mater Phys Biol Med 2008; 21: 103-111.
6. Nakagoshi A, Fukunaga M, Umeda M, Mori Y, Higuchi T, Tanaka C,. Somatotopic representation of acupoints in human primary somatosensory cortex: an FMRI study. Magn Reson Med Sci 2005; 4: 187-189.
7. Hugger T, Zahneisen B, LeVan P, Jin Lee K, Lee H-L, Zaitsev M, Hennig J,. Fast undersampled functional magnetic resonance imaging using nonlinear regularized parallel image reconstruction. PLoS ONE 2011; 6: 1-9.
8. Pruessmann KP, Weiger M, Bornert P, Boesiger P,. Advances in sensitivity encoding with arbitrary k-space trajectories. Magn Reson Med 2001; 46: 638-651.
9. Lin FH, Witzel T, Zeffiro TA, Belliveau JW,. Linear constraint minimum variance beamformer functional magnetic resonance inverse imaging. Neuroimage 2008; 43: 297-311.
10. Rabrait C, Ciuciu P, Ribes A, Poupon C, Le Roux P,. High temporal resolution functional MRI using parallel echo volumar imaging. J Magn Reson Imaging 2008; 27: 744-753.
11. Tayler AB, Holland DJ, Sederman AJ, Gladden LF,. Time resolved velocity measurements of unsteady systems using spiral imaging. J Magn Reson 2012; 211: 1-10.
12. Lee JH, Hargreaves BA, Hu BS, Nishimura DG,. Fast 3D imaging using variable-density spiral trajectories with applications to limb perfusion. Magn Reson Med 2003; 50: 1276-1285.
13. Tsai CM, Nishimura DG,. Reduced aliasing artefacts using variable-density k-space sampling trajectories. Magn Reson Med 2000; 43: 452-458.
14. Liu CY, Varadarajan P, Pohost GM, Nayak KS,. Real-time color-flow MRI at 3 T using variable-density spiral phase contrast. Magn Reson Imaging 2008; 26: 661-666.
15. Kressler B, Spincemaille P, Nguyen TD, Cheng L, Xi Hai Z, Prince MR, Wang Y,. Three-dimensional cine imaging using variable-density spiral trajectories and SSFP with application to coronary artery angiography. Magn Reson Med 2007; 58: 535-543.
16. Karampinos DC, Van AT, Olivero, WC, Georgiadis, JG, Sutton, BP,. High-resolution diffusion tensor imaging of the human pons with a reduced field-of-view, multishot, variable-density, spiral acquisition at 3 T. Magn Reson Med 2009; 62: 1007-1016.
17. Santos JM, Cunningham CH, Lustig M, Hargeaves BA, Hu BS, Nishimura, Pauly JM,. Single breath-hold whole-heart MRA using variable-density spirals at 3 T. Magn Reson Med 2006; 55: 371-379.
18. Chang C, Glover GH,. Variable-density spiral-in/out functional magnetic resonance imaging. Magn Reson Med 2011; 65: 1287-1296.
19. Candes EJ, Romberg J, Tao T,. Robust uncertainty principles: exact signal reconstruction from highly incomplete frequency information. IEEE Trans Inform Theory 2006; 52: 489-509.
20. Donoho DL,. Compressed sensing. IEEE Trans Inform Theory 2006; 52: 1289-1306.
21. Lustig M, Donoho D, Pauly JM,. Sparse MRI: the application of compressed sensing for rapid MR imaging. Magn Reson Med 2007; 58: 1182-1195.
22. Lustig M, Donoho DL, Santos JM, Pauly JM,. Compressed sensing MRI. IEEE Signal Process Mag 2008; 25: 72-82.
23. Jung H, Sung K, Nayak KS, Kim EY, Ye JC,. k-t FOCUSS: a general compressed sensing framework for high resolution dynamic MRI. Magn Reson Med 2009; 61: 103-116.
24. Otazo R, Kim D, Axel L, Sodickson DK,. Combination of compressed sensing and parallel imaging for highly accelerated first-pass cardiac perfusion MRI. Magn Reson Med 2010; 64: 767-776.
25. Holland DJ, Malioutov DM, Blake A, Sederman AJ, Gladden LF,. Reducing data acquisition times in phase-encoded velocity imaging using compressed sensing. J Magn Reson 2010; 203: 236-246.
26. Larson PEZ, Hu S, Lustig M, Kerr AB, Nelson SJ, Kurhanewicz J, Pauly JM, Vigneron DB,. Fast dynamic 3D MR spectroscopic imaging with compressed sensing and multiband excitation pulses for hyperpolarized 13C studies. Magn Reson Med 2011; 65: 610-619.
27. Çukur T, Lustig M, Nishimura DG,. Improving non-contrast-enhanced steady-state free precession angiography with compressed sensing. Magn Reson Med 2009; 61: 1122-1131.
28. Holland DJ, Bostock MJ, Gladden LF, Nietlispach D,. Fast multidimensional NMR spectroscopy using compressed sensing. Angew Chem Int Ed Engl 2011; 50: 6548-6551.
29. Kim YC, Narayanan SS, Nayak KS,. Accelerated three-dimensional upper airway MRI using compressed sensing. Magn Reson Med 2009; 61: 1434-1440.
30. Gamper U, Boesiger P, Kozerke S,. Compressed sensing in dynamic MRI. Magn Reson Med 2008; 59: 365-373.
31. Ahn CB, Kim JH, Cho ZH,. High-speed spiral-scan echo planar NMR imaging. IEEE Trans Med Imaging 1986; 5: 2-7.
32. Block KT, Frahm J,. Spiral imaging: a critical appraisal. J Magn Reson Imaging 2005; 21: 657-668.
33. Griswold MA, Jakob PM, Heidemann RM, Nikkka M, Jellus V, Wang J, Kiefer B, Haase A,. Generalized autocalibrating partially parallel acquisitions (GRAPPA). Magn Reson Med 2002; 47: 1202-1210.
34. Peters DC, Korosec FR, Grist TM, Block WF, Holden JE, Vigen KK, Mistretta CA,. Undersampled projection reconstruction applied to MR angiography. Magn Reson Med 2000; 43: 91-101.
35. Pruessmann KP, Weiger M, Scheidegger MB, Boesiger P,. SENSE: sensitivity encoding for fast MRI. Magn Reson Med 1999; 42: 952-962.
36. Sodickson DK, Manning WJ,. Simultaneous acquisition of spatial harmonics (SMASH): fast imaging with radiofrequency coil arrays. Magn Reson Med 1997; 38: 591-603.
37. Xiao Z, Hoge WS, Mulkern RV, Zhao L, Hu G, Kyriakos WE,. Comparison of parallel MRI reconstruction methods for accelerated 3D fast spin-echo imaging. Magn Reson Med 2008; 60: 650-660.
38. Skodras A, Christopoulos C, Ebrahimi T,. The JPEG 2000 still image compression standard. IEEE Signal Process Mag 2001; 18: 36-58.
39. Candès EJ, Guo F,. New multiscale transforms, minimum total variation synthesis: applications to edge-preserving image reconstruction. Signal Process 2002; 82: 1519-1543.
40. 1-regularized least squares. IEEE J Sel Top Signal Process 2007; 1: 606-617.
41. Fornasier M, Rauhut H,. Iterative thresholding algorithms. Appl Comput Harmon Anal 2008; 25: 187-208.
42. 1-minimization with applications to compressed sensing. SIAM J Imaging Sci 2008; 1: 143-168.
43. Salustri C, Yang Y, Glover GH,. Simple but reliable solutions for spiral MRI gradient design. J Magn Reson 1999; 140: 347-350.
44. Fessler JA, Sutton BP,. Nonuniform fast Fourier transforms using min-max interpolation. IEEE Trans Signal Process 2003; 51: 560-574.
45. Irarrazabal P, Meyer CH, Nishimura DG, Macovski A,. Inhomogeneity correction using an estimated linear field map. Magn Reson Med 1996; 35: 278-282.
46. Lo SC, Li H, Freedman MT,. Optimization of wavelet decomposition for image compression and feature preservation. IEEE Trans Med Imaging 2003; 22: 1141-1151.
47. Smith SM, Jenkinson M, Woolrich MW, et al. Advances in functional and structural MR image analysis and implementation as FSL. Neuroimage 2004; 23: 208-219.
48. Jenkinson M, Bannister PR, Brady JM, Smith SM,. Improved optimisation for the robust and accurate linear registration and motion correction of brain images. Neuroimage 2002; 17: 825-841.
49. Smith SM,. Fast robust automated brain extraction. Human Brain Mapp 2002; 17: 143-155.
50. Woolrich MW, Ripley BD, Brady JM, Smith SM,. Temporal autocorrelation in univariate linear modelling of FMRI data. Neuroimage 2001; 14: 1370-1386.
51. Jenkinson M, Smith SM,. A global optimisation method for robust affine registration of brain images. Med Image Anal 2001; 5: 143-156.
52. Worsley KJ, Liao C, Aston J, Petre V, Duncan GH, Morales F, Evans AC,. A general statistical analysis for fMRI data. Neuroimage 2002; 15: 1-15.
53. Beckmann C, Jenkinson M, Smith SM,. General multi-level linear modelling for group analysis in fMRI. Neuroimage 2003; 20: 1052-1063.
54. Woolrich MW, Behrens TEJ, Beckmann CF, Jenkinson M, Smith SM,. Multi-level linear modelling for fMRI analysis using Baysian inference. Neuroimage 2004; 21: 1732-1747.
55. Woolrich MW,. Robust group analysis using outlier inference. Neuroimage 2008; 41: 286-301.
56. Burger M, Gilbia G, Osher S, Xu J,. Nonlinear inverse scale space methods. Commun Math Sci 2006; 4: 179-212.
57. Brewer KD, Rioux JA, Klassen M, Bowen CV, Beyea SD,. Signal displacement in spiral-in acquisitions: simulations and implications for imaging in SFG regions. Magn Reson Imaging 2012; 30: 753-763.