-
1
-
-
84856417389
-
Adenylylation control by intra- or intermolecular active-site obstruction in Fic proteins
-
Engel, P. et al. Adenylylation control by intra- or intermolecular active-site obstruction in Fic proteins. Nature 482, 107-110 (2012).
-
(2012)
Nature
, vol.482
, pp. 107-110
-
-
Engel, P.1
-
2
-
-
79960923484
-
AMPylation: Something old is new again
-
Woolery, A.R., Luong, P., Broberg, C.A. & Orth, K. AMPylation: something old is new again. Front Microbiol. 1, 113 (2010).
-
(2010)
Front Microbiol.
, vol.1
, pp. 113
-
-
Woolery, A.R.1
Luong, P.2
Broberg, C.A.3
Orth, K.4
-
3
-
-
65949112481
-
AMPylation is a new post-translational modiFICation
-
Yarbrough, M.L. & Orth, K. AMPylation is a new post-translational modiFICation. Nat. Chem. Biol. 5, 378-379 (2009).
-
(2009)
Nat. Chem. Biol.
, vol.5
, pp. 378-379
-
-
Yarbrough, M.L.1
Orth, K.2
-
4
-
-
1542472730
-
New connections in the prokaryotic toxin-antitoxin network: Relationship with the eukaryotic nonsense-mediated RNA decay system
-
Anantharaman, V. & Aravind, L. New connections in the prokaryotic toxin-antitoxin network: relationship with the eukaryotic nonsense-mediated RNA decay system. Genome Biol. 4, R81 (2003).
-
(2003)
Genome Biol.
, vol.4
-
-
Anantharaman, V.1
Aravind, L.2
-
5
-
-
57649155916
-
Doc of prophage P1 is inhibited by its antitoxin partner Phd through fold complementation
-
Garcia-Pino, A. et al. Doc of prophage P1 is inhibited by its antitoxin partner Phd through fold complementation. J. Biol. Chem. 283, 30821-30827 (2008).
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 30821-30827
-
-
Garcia-Pino, A.1
-
6
-
-
58149400542
-
AMPylation of Rho GTPases by Vibrio VopS disrupts effector binding and downstream signaling
-
Yarbrough, M.L. et al. AMPylation of Rho GTPases by Vibrio VopS disrupts effector binding and downstream signaling. Science 323, 269-272 (2009).
-
(2009)
Science
, vol.323
, pp. 269-272
-
-
Yarbrough, M.L.1
-
7
-
-
84860541901
-
A Xanthomonas uridine 5′-monophosphate transferase inhibits plant immune kinases
-
Feng, F. et al. A Xanthomonas uridine 5′-monophosphate transferase inhibits plant immune kinases. Nature 485, 114-118 (2012).
-
(2012)
Nature
, vol.485
, pp. 114-118
-
-
Feng, F.1
-
8
-
-
80052399642
-
Modulation of Rab GTPase function by a protein phosphocholine transferase
-
Mukherjee, S. et al. Modulation of Rab GTPase function by a protein phosphocholine transferase. Nature 477, 103-106 (2011).
-
(2011)
Nature
, vol.477
, pp. 103-106
-
-
Mukherjee, S.1
-
9
-
-
77955416465
-
Structural basis of Fic-mediated adenylylation
-
Xiao, J., Worby, C.A., Mattoo, S., Sankaran, B. & Dixon, J.E. Structural basis of Fic-mediated adenylylation. Nat. Struct. Mol. Biol. 17, 1004-1010 (2010).
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 1004-1010
-
-
Xiao, J.1
Worby, C.A.2
Mattoo, S.3
Sankaran, B.4
Dixon, J.E.5
-
10
-
-
77953766744
-
Kinetic and structural insights into the mechanism of AMPylation by VopS Fic domain
-
Luong, P. et al. Kinetic and structural insights into the mechanism of AMPylation by VopS Fic domain. J. Biol. Chem. 285, 20155-20163 (2010).
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 20155-20163
-
-
Luong, P.1
-
11
-
-
67149136177
-
Fido, a novel AMPylation domain common to Fic, Doc, and AvrB
-
Kinch, L.N., Yarbrough, M.L., Orth, K. & Grishin, N.V. Fido, a novel AMPylation domain common to Fic, Doc, and AvrB. PLoS ONE 4, e5818 (2009).
-
(2009)
PLoS ONE
, vol.4
-
-
Kinch, L.N.1
Yarbrough, M.L.2
Orth, K.3
Grishin, N.V.4
-
12
-
-
0027372158
-
Plasmid addiction genes of bacteriophage P1: Doc, which causes cell death on curing of prophage, and phd, which prevents host death when prophage is retained
-
Lehnherr, H., Maguin, E., Jafri, S. & Yarmolinsky, M.B. Plasmid addiction genes of bacteriophage P1: doc, which causes cell death on curing of prophage, and phd, which prevents host death when prophage is retained. J. Mol. Biol. 233, 414-428 (1993).
-
(1993)
J. Mol. Biol.
, vol.233
, pp. 414-428
-
-
Lehnherr, H.1
Maguin, E.2
Jafri, S.3
Yarmolinsky, M.B.4
-
13
-
-
44449119912
-
Bacterial addiction module toxin Doc inhibits translation elongation through its association with the 30S ribosomal subunit
-
Liu, M., Zhang, Y., Inouye, M. & Woychik, N.A. Bacterial addiction module toxin Doc inhibits translation elongation through its association with the 30S ribosomal subunit. Proc. Natl. Acad. Sci. USA 105, 5885-5890 (2008).
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 5885-5890
-
-
Liu, M.1
Zhang, Y.2
Inouye, M.3
Woychik, N.A.4
-
14
-
-
84859324213
-
In vitro experimental system for analysis of transcription-translation coupling
-
Castro-Roa, D. & Zenkin, N. In vitro experimental system for analysis of transcription-translation coupling. Nucleic Acids Res. 40, e45 (2012).
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Castro-Roa, D.1
Zenkin, N.2
-
15
-
-
29844448116
-
The interaction between C75 of tRNA and the A loop of the ribosome stimulates peptidyl transferase activity
-
Brunelle, J.L., Youngman, E.M., Sharma, D. & Green, R. The interaction between C75 of tRNA and the A loop of the ribosome stimulates peptidyl transferase activity. RNA 12, 33-39 (2006).
-
(2006)
RNA
, vol.12
, pp. 33-39
-
-
Brunelle, J.L.1
Youngman, E.M.2
Sharma, D.3
Green, R.4
-
17
-
-
0033554425
-
Detection of conformational changes along the kinetic pathway of protein kinase A using a catalytic trapping technique
-
Shaffer, J. & Adams, J.A. Detection of conformational changes along the kinetic pathway of protein kinase A using a catalytic trapping technique. Biochemistry 38, 12072-12079 (1999).
-
(1999)
Biochemistry
, vol.38
, pp. 12072-12079
-
-
Shaffer, J.1
Adams, J.A.2
-
18
-
-
80053563668
-
Selective translation of leaderless mRNAs by specialized ribosomes generated by MazF in Escherichia coli
-
Vesper, O. et al. Selective translation of leaderless mRNAs by specialized ribosomes generated by MazF in Escherichia coli. Cell 147, 147-157 (2011).
-
(2011)
Cell
, vol.147
, pp. 147-157
-
-
Vesper, O.1
-
19
-
-
79956328889
-
Enteric virulence associated protein VapC inhibits translation by cleavage of initiator tRNA
-
Winther, K.S. & Gerdes, K. Enteric virulence associated protein VapC inhibits translation by cleavage of initiator tRNA. Proc. Natl. Acad. Sci. USA 108, 7403-7407 (2011).
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 7403-7407
-
-
Winther, K.S.1
Gerdes, K.2
-
20
-
-
64049098151
-
MRNA interferases, sequence-specific endoribonucleases from the toxin-antitoxin systems
-
Yamaguchi, Y. & Inouye, M. mRNA interferases, sequence-specific endoribonucleases from the toxin-antitoxin systems. Prog. Mol. Biol. Transl. Sci. 85, 467-500 (2009).
-
(2009)
Prog. Mol. Biol. Transl. Sci.
, vol.85
, pp. 467-500
-
-
Yamaguchi, Y.1
Inouye, M.2
-
21
-
-
0033593370
-
Crystal structure of intact elongation factor EF-Tu from Escherichia coli in GDP conformation at 2.05 Å resolution
-
Song, H., Parsons, M.R., Rowsell, S., Leonard, G. & Phillips, S.E. Crystal structure of intact elongation factor EF-Tu from Escherichia coli in GDP conformation at 2.05 Å resolution. J. Mol. Biol. 285, 1245-1256 (1999).
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 1245-1256
-
-
Song, H.1
Parsons, M.R.2
Rowsell, S.3
Leonard, G.4
Phillips, S.E.5
-
22
-
-
0028812785
-
Crystal structure of the ternary complex of Phe-tRNAPhe, EF-Tu, and a GTP analog
-
Nissen, P. et al. Crystal structure of the ternary complex of Phe-tRNAPhe, EF-Tu, and a GTP analog. Science 270, 1464-1472 (1995).
-
(1995)
Science
, vol.270
, pp. 1464-1472
-
-
Nissen, P.1
-
23
-
-
33645214738
-
ATSAS 2.1, a program package for small-angle scattering data analysis
-
Konarev, P.V., Petoukhov, M.V., Volkov, V.V. & Svergun, D.I. ATSAS 2.1, a program package for small-angle scattering data analysis. J. Appl. Crystallogr. 39, 277-286 (2006).
-
(2006)
J. Appl. Crystallogr.
, vol.39
, pp. 277-286
-
-
Konarev, P.V.1
Petoukhov, M.V.2
Volkov, V.V.3
Svergun, D.I.4
-
24
-
-
79955642720
-
The client protein p53 adopts a molten globule-like state in the presence of Hsp90
-
Park, S.J., Borin, B.N., Martinez-Yamout, M.A. & Dyson, H.J. The client protein p53 adopts a molten globule-like state in the presence of Hsp90. Nat. Struct. Mol. Biol. 18, 537-541 (2011).
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 537-541
-
-
Park, S.J.1
Borin, B.N.2
Martinez-Yamout, M.A.3
Dyson, H.J.4
-
25
-
-
77954256912
-
Allostery and intrinsic disorder mediate transcription regulation by conditional cooperativity
-
Garcia-Pino, A. et al. Allostery and intrinsic disorder mediate transcription regulation by conditional cooperativity. Cell 142, 101-111 (2010).
-
(2010)
Cell
, vol.142
, pp. 101-111
-
-
Garcia-Pino, A.1
-
26
-
-
0038161052
-
Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations
-
Gray, J.J. et al. Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations. J. Mol. Biol. 331, 281-299 (2003).
-
(2003)
J. Mol. Biol.
, vol.331
, pp. 281-299
-
-
Gray, J.J.1
-
27
-
-
0028985596
-
Addiction protein Phd of plasmid prophage P1 is a substrate of the ClpXP serine protease of Escherichia coli
-
Lehnherr, H. & Yarmolinsky, M.B. Addiction protein Phd of plasmid prophage P1 is a substrate of the ClpXP serine protease of Escherichia coli. Proc. Natl. Acad. Sci. USA 92, 3274-3277 (1995).
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 3274-3277
-
-
Lehnherr, H.1
Yarmolinsky, M.B.2
-
28
-
-
77954280480
-
FoXS: A web server for rapid computation and fitting of SAXS profiles
-
Schneidman-Duhovny, D., Hammel, M. & Sali, A. FoXS: a web server for rapid computation and fitting of SAXS profiles. Nucleic Acids Res. 38, W540-W544 (2010).
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Schneidman-Duhovny, D.1
Hammel, M.2
Sali, A.3
-
29
-
-
84878644184
-
Structure of the Legionella effector AnkX reveals the mechanism of phosphocholine transfer by the FIC domain
-
Campanacci, V., Mukherjee, S., Roy, C.R. & Cherfils, J. Structure of the Legionella effector AnkX reveals the mechanism of phosphocholine transfer by the FIC domain. EMBO J. 32, 1469-1477 (2013).
-
(2013)
EMBO J.
, vol.32
, pp. 1469-1477
-
-
Campanacci, V.1
Mukherjee, S.2
Roy, C.R.3
Cherfils, J.4
-
30
-
-
11844282843
-
Characterization of the Phd repressor-antitoxin boundary
-
McKinley, J.E. & Magnuson, R.D. Characterization of the Phd repressor-antitoxin boundary. J. Bacteriol. 187, 765-770 (2005).
-
(2005)
J. Bacteriol.
, vol.187
, pp. 765-770
-
-
McKinley, J.E.1
Magnuson, R.D.2
-
31
-
-
61749098587
-
Evolution of enzymatic activities in the enolase superfamily: Stereochemically distinct mechanisms in two families of cis,cis-muconate lactonizing enzymes
-
Sakai, A. et al. Evolution of enzymatic activities in the enolase superfamily: stereochemically distinct mechanisms in two families of cis,cis-muconate lactonizing enzymes. Biochemistry 48, 1445-1453 (2009).
-
(2009)
Biochemistry
, vol.48
, pp. 1445-1453
-
-
Sakai, A.1
-
32
-
-
9744224380
-
Structures and mechanisms of Nudix hydrolases
-
Mildvan, A.S. et al. Structures and mechanisms of Nudix hydrolases. Arch. Biochem. Biophys. 433, 129-143 (2005).
-
(2005)
Arch. Biochem. Biophys.
, vol.433
, pp. 129-143
-
-
Mildvan, A.S.1
-
33
-
-
84861550633
-
Regulation of enteric vapBC transcription: Induction by VapC toxin dimer-breaking
-
Winther, K.S. & Gerdes, K. Regulation of enteric vapBC transcription: induction by VapC toxin dimer-breaking. Nucleic Acids Res. 40, 4347-4357 (2012).
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 4347-4357
-
-
Winther, K.S.1
Gerdes, K.2
-
34
-
-
0027475422
-
Prokaryotic elongation factor Tu is phosphorylated in vivo
-
Lippmann, C. et al. Prokaryotic elongation factor Tu is phosphorylated in vivo. J. Biol. Chem. 268, 601-607 (1993).
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 601-607
-
-
Lippmann, C.1
-
35
-
-
77649268964
-
Bacterial translation elongation factor EF-Tu interacts and colocalizes with actin-like MreB protein
-
Defeu Soufo, H.J. et al. Bacterial translation elongation factor EF-Tu interacts and colocalizes with actin-like MreB protein. Proc. Natl. Acad. Sci. USA 107, 3163-3168 (2010).
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 3163-3168
-
-
Defeu Soufo, H.J.1
-
36
-
-
0021104966
-
Stereoselectivity of ectonucleotidases on vascular endothelial cells
-
Cusack, N.J., Pearson, J.D. & Gordon, J.L. Stereoselectivity of ectonucleotidases on vascular endothelial cells. Biochem. J. 214, 975-981 (1983).
-
(1983)
Biochem. J.
, vol.214
, pp. 975-981
-
-
Cusack, N.J.1
Pearson, J.D.2
Gordon, J.L.3
-
37
-
-
0020701817
-
Characterization of the 5′ termini of purified nascent simian virus 40 late transcripts
-
Lycan, D.E. & Danna, K.J. Characterization of the 5′ termini of purified nascent simian virus 40 late transcripts. J. Virol. 45, 264-274 (1983).
-
(1983)
J. Virol.
, vol.45
, pp. 264-274
-
-
Lycan, D.E.1
Danna, K.J.2
-
38
-
-
0026466949
-
Isolation and functional analysis of histidine-tagged elongation factor Tu
-
Boon, K. et al. Isolation and functional analysis of histidine-tagged elongation factor Tu. Eur. J. Biochem. 210, 177-183 (1992).
-
(1992)
Eur. J. Biochem.
, vol.210
, pp. 177-183
-
-
Boon, K.1
-
39
-
-
84897111454
-
1H, 13C, and 15N backbone and side-chain chemical shift assignment of the toxin Doc in the unbound state
-
doi:10.1007/s12104-013-9471-9
-
De Gieter, S., Loris, R., van Nuland, N.A. & Garcia-Pino, A. 1H, 13C, and 15N backbone and side-chain chemical shift assignment of the toxin Doc in the unbound state. Biomol. NMR Assign. doi:10.1007/s12104-013-9471-9 (2013).
-
(2013)
Biomol. NMR Assign
-
-
De Gieter, S.1
Loris, R.2
Van Nuland, N.A.3
Garcia-Pino, A.4
-
40
-
-
0029400480
-
NMRPipe: A multidimensional spectral processing system based on UNIX pipes
-
Delaglio, F. et al. NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J. Biomol. NMR 6, 277-293 (1995).
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
-
41
-
-
4644259437
-
Using NMRView to visualize and analyze the NMR spectra of macromolecules
-
Johnson, B.A. Using NMRView to visualize and analyze the NMR spectra of macromolecules. Methods Mol. Biol. 278, 313-352 (2004).
-
(2004)
Methods Mol. Biol.
, vol.278
, pp. 313-352
-
-
Johnson B., .A.1
-
42
-
-
19444382397
-
The CCPN data model for NMR spectroscopy: Development of a software pipeline
-
Vranken, W.F. et al. The CCPN data model for NMR spectroscopy: development of a software pipeline. Proteins 59, 687-696 (2005).
-
(2005)
Proteins
, vol.59
, pp. 687-696
-
-
Vranken, W.F.1
-
43
-
-
33750056673
-
ROSETTALIGAND: Protein-small molecule docking with full side-chain flexibility
-
Meiler, J. & Baker, D. ROSETTALIGAND: protein-small molecule docking with full side-chain flexibility. Proteins 65, 538-548 (2006).
-
(2006)
Proteins
, vol.65
, pp. 538-548
-
-
Meiler, J.1
Baker, D.2
-
44
-
-
0141484613
-
PRIMUS: A Windows PC-based system for small-angle scattering data analysis
-
Konarev, P.V., Volkov, V.V., Sokolova, A.V., Koch, M.H.J. & Svergun, D.I. PRIMUS: a Windows PC-based system for small-angle scattering data analysis. J. Appl. Crystallogr. 36, 1277-1282 (2003).
-
(2003)
J. Appl. Crystallogr.
, vol.36
, pp. 1277-1282
-
-
Konarev, P.V.1
Volkov, V.V.2
Sokolova, A.V.3
Koch, M.H.J.4
Svergun, D.I.5
-
45
-
-
77955358961
-
Using Situs for the integration of multi-resolution structures
-
Wriggers, W. Using Situs for the integration of multi-resolution structures. Biophys. Rev. 2, 21-27 (2010).
-
(2010)
Biophys. Rev.
, vol.2
, pp. 21-27
-
-
Wriggers, W.1
-
46
-
-
84876800465
-
Accurate assessment of mass, models and resolution by small-angle scattering
-
Rambo, R.P. & Tainer, J.A. Accurate assessment of mass, models and resolution by small-angle scattering. Nature 496, 477-481 (2013).
-
(2013)
Nature
, vol.496
, pp. 477-481
-
-
Rambo, R.P.1
Tainer, J.A.2
|