-
1
-
-
0024075637
-
Cloning of the fic-1 gene involved in cell filamentation induced by cyclic AMP and construction of a delta fic Escherichia coli strain
-
Kawamukai M, Matsuda H, Fujii W, Nishida T, Izumoto Y, et al. (1988) Cloning of the fic-1 gene involved in cell filamentation induced by cyclic AMP and construction of a delta fic Escherichia coli strain. J Bacteriol 170: 3864-3869.
-
(1988)
J Bacteriol
, vol.170
, pp. 3864-3869
-
-
Kawamukai, M.1
Matsuda, H.2
Fujii, W.3
Nishida, T.4
Izumoto, Y.5
-
2
-
-
0025861991
-
Functional analysis of the fic gene involved in regulation of cell division
-
Komano T, Utsumi R, Kawamukai M (1991) Functional analysis of the fic gene involved in regulation of cell division. Res Microbiol 142: 269-277.
-
(1991)
Res Microbiol
, vol.142
, pp. 269-277
-
-
Komano, T.1
Utsumi, R.2
Kawamukai, M.3
-
3
-
-
46249111623
-
Ankyrin repeat proteins comprise a diverse family of bacterial type IV effectors
-
Pan X, Luhrmann A, Satoh A, Laskowski-Arce MA, Roy CR (2008) Ankyrin repeat proteins comprise a diverse family of bacterial type IV effectors. Science 320: 1651-1654.
-
(2008)
Science
, vol.320
, pp. 1651-1654
-
-
Pan, X.1
Luhrmann, A.2
Satoh, A.3
Laskowski-Arce, M.A.4
Roy, C.R.5
-
4
-
-
31844451805
-
Identification of proteins secreted via Vibrio parahaemolyticus type III secretion system 1
-
Ono T, Park KS, Ueta M, Iida T, Honda T (2006) Identification of proteins secreted via Vibrio parahaemolyticus type III secretion system 1. Infect Immun 74: 1032-1042.
-
(2006)
Infect Immun
, vol.74
, pp. 1032-1042
-
-
Ono, T.1
Park, K.S.2
Ueta, M.3
Iida, T.4
Honda, T.5
-
5
-
-
58149400542
-
AMPylation of Rho GTPases by Vibrio VopS Disrupts Effector Binding and Downstream Signaling
-
Yarbrough ML, Li Y, Kinch LN, Grishin NV, Ball HL, et al. (2009) AMPylation of Rho GTPases by Vibrio VopS Disrupts Effector Binding and Downstream Signaling. Science 323: 269-272.
-
(2009)
Science
, vol.323
, pp. 269-272
-
-
Yarbrough, M.L.1
Li, Y.2
Kinch, L.N.3
Grishin, N.V.4
Ball, H.L.5
-
6
-
-
38549146894
-
The Pfam protein families database
-
Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, et al. (2008) The Pfam protein families database. Nucleic Acids Res 36: D281-288.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Finn, R.D.1
Tate, J.2
Mistry, J.3
Coggill, P.C.4
Sammut, S.J.5
-
7
-
-
1542472730
-
New connections in the prokaryotic toxin-antitoxin network: Relationship with the eukaryotic nonsense-mediated RNA decay system
-
Anantharaman V, Aravind L (2003) New connections in the prokaryotic toxin-antitoxin network: relationship with the eukaryotic nonsense-mediated RNA decay system. Genome Biol 4: R81.
-
(2003)
Genome Biol
, vol.4
-
-
Anantharaman, V.1
Aravind, L.2
-
8
-
-
0027372158
-
Plasmid addiction genes of bacteriophage P1: Doc, which causes cell death on curing of prophage, and phd, which prevents host death when prophage is retained
-
Lehnherr H, Maguin E, Jafri S, Yarmolinsky MB (1993) Plasmid addiction genes of bacteriophage P1: doc, which causes cell death on curing of prophage, and phd, which prevents host death when prophage is retained. J Mol Biol 233: 414-428.
-
(1993)
J Mol Biol
, vol.233
, pp. 414-428
-
-
Lehnherr, H.1
Maguin, E.2
Jafri, S.3
Yarmolinsky, M.B.4
-
9
-
-
44449119912
-
Bacterial addiction module toxin Doc inhibits translation elongation through its association with the 30S ribosomal subunit
-
Liu M, Zhang Y, Inouye M, Woychik NA (2008) Bacterial addiction module toxin Doc inhibits translation elongation through its association with the 30S ribosomal subunit. Proc Natl Acad Sci U S A 105: 5885-5890.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 5885-5890
-
-
Liu, M.1
Zhang, Y.2
Inouye, M.3
Woychik, N.A.4
-
10
-
-
57649155916
-
Doc of Prophage P1 Is Inhibited by Its Antitoxin Partner Phd through Fold Complementation
-
Garcia-Pino A, Christensen-Dalsgaard M, Wyns L, Yarmolinsky M, Magnuson RD, et al. (2008) Doc of Prophage P1 Is Inhibited by Its Antitoxin Partner Phd through Fold Complementation. J Biol Chem 283: 30821-30827.
-
(2008)
J Biol Chem
, vol.283
, pp. 30821-30827
-
-
Garcia-Pino, A.1
Christensen-Dalsgaard, M.2
Wyns, L.3
Yarmolinsky, M.4
Magnuson, R.D.5
-
11
-
-
67149101335
-
-
(JCSG) JCfSG (to be published) Crystal structure of Protein of Unknown Function with a Fic Domain (NP_811426.1) from Bacteroides thetaiotaomicron VPI-5482 at 2.71 A resolution.
-
(JCSG) JCfSG (to be published) Crystal structure of Protein of Unknown Function with a Fic Domain (NP_811426.1) from Bacteroides thetaiotaomicron VPI-5482 at 2.71 A resolution.
-
-
-
-
13
-
-
67149136695
-
-
to be published
-
Cuff ME, Xu X, Zheng H, Edwards A, Savchenko A, et al. (to be published) Structure of cell filamentation protein (fic) from Helicobacter pylori.
-
Structure of cell filamentation protein (fic) from Helicobacter pylori
-
-
Cuff, M.E.1
Xu, X.2
Zheng, H.3
Edwards, A.4
Savchenko, A.5
-
14
-
-
65249113924
-
Crystal structure of the Fic (Filamentation induced by cAMP) family protein SO4266 (gi 24375750) from Shewanella oneidensis MR-1 at 1.6 A resolution
-
Das D, Krishna SS, McMullan D, Miller MD, Xu Q, et al. (2009) Crystal structure of the Fic (Filamentation induced by cAMP) family protein SO4266 (gi 24375750) from Shewanella oneidensis MR-1 at 1.6 A resolution. Proteins 75: 264-271.
-
(2009)
Proteins
, vol.75
, pp. 264-271
-
-
Das, D.1
Krishna, S.S.2
McMullan, D.3
Miller, M.D.4
Xu, Q.5
-
15
-
-
4043121007
-
The SHS2 module is a common structural theme in functionally diverse protein groups, like Rpb7p, FtsA, GyrI, and MTH1598/TM1083 superfamilies
-
Anantharaman V, Aravind L (2004) The SHS2 module is a common structural theme in functionally diverse protein groups, like Rpb7p, FtsA, GyrI, and MTH1598/TM1083 superfamilies. Proteins 56: 795-807.
-
(2004)
Proteins
, vol.56
, pp. 795-807
-
-
Anantharaman, V.1
Aravind, L.2
-
16
-
-
13244250970
-
EDD, a novel phosphotransferase domain common to mannose transporter EIIA, dihydroxyacetone kinase, and DegV
-
Kinch LN, Cheek S, Grishin NV (2005) EDD, a novel phosphotransferase domain common to mannose transporter EIIA, dihydroxyacetone kinase, and DegV. Protein Sci 14: 360-367.
-
(2005)
Protein Sci
, vol.14
, pp. 360-367
-
-
Kinch, L.N.1
Cheek, S.2
Grishin, N.V.3
-
17
-
-
1542476961
-
Crystal structure of the type III effector AvrB from Pseudomonas syringae
-
Lee CC, Wood MD, Ng K, Andersen CB, Liu Y, et al. (2004) Crystal structure of the type III effector AvrB from Pseudomonas syringae. Structure 12: 487-494.
-
(2004)
Structure
, vol.12
, pp. 487-494
-
-
Lee, C.C.1
Wood, M.D.2
Ng, K.3
Andersen, C.B.4
Liu, Y.5
-
18
-
-
34047233602
-
Type III effector activation via nucleotide binding, phosphorylation, and host target interaction
-
Desveaux D, Singer AU, Wu AJ, McNulty BC, Musselwhite L, et al. (2007) Type III effector activation via nucleotide binding, phosphorylation, and host target interaction. PLoS Pathog 3: e48.
-
(2007)
PLoS Pathog
, vol.3
-
-
Desveaux, D.1
Singer, A.U.2
Wu, A.J.3
McNulty, B.C.4
Musselwhite, L.5
-
19
-
-
33646413401
-
AvrB mutants lose both virulence and avirulence activities on soybean and Arabidopsis
-
Ong LE, Innes RW (2006) AvrB mutants lose both virulence and avirulence activities on soybean and Arabidopsis. Mol Microbiol 60: 951-962.
-
(2006)
Mol Microbiol
, vol.60
, pp. 951-962
-
-
Ong, L.E.1
Innes, R.W.2
-
20
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
-
22
-
-
0037423702
-
COMPASS: A tool for comparison of multiple protein alignments with assessment of statistical significance
-
Sadreyev R, Grishin N (2003) COMPASS: a tool for comparison of multiple protein alignments with assessment of statistical significance. J Mol Biol 326: 317-336.
-
(2003)
J Mol Biol
, vol.326
, pp. 317-336
-
-
Sadreyev, R.1
Grishin, N.2
-
24
-
-
0038386050
-
3D-Jury: A simple approach to improve protein structure predictions
-
Ginalski K, Elofsson A, Fischer D, Rychlewski L (2003) 3D-Jury: a simple approach to improve protein structure predictions. Bioinformatics 19: 1015-1018.
-
(2003)
Bioinformatics
, vol.19
, pp. 1015-1018
-
-
Ginalski, K.1
Elofsson, A.2
Fischer, D.3
Rychlewski, L.4
-
25
-
-
35448942782
-
Evaluation of 3D-Jury on CASP7 models
-
Kajan L, Rychlewski L (2007) Evaluation of 3D-Jury on CASP7 models. BMC Bioinformatics 8: 304.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 304
-
-
Kajan, L.1
Rychlewski, L.2
-
27
-
-
0242362161
-
Combining local-structure, fold-recognition, and new fold methods for protein structure prediction
-
Karplus K, Karchin R, Draper J, Casper J, Mandel-Gutfreund Y, et al. (2003) Combining local-structure, fold-recognition, and new fold methods for protein structure prediction. Proteins 53 Suppl 6: 491-496.
-
(2003)
Proteins
, vol.53
, Issue.SUPPL. 6
, pp. 491-496
-
-
Karplus, K.1
Karchin, R.2
Draper, J.3
Casper, J.4
Mandel-Gutfreund, Y.5
-
28
-
-
23144463912
-
FFAS03: A server for profile-profile sequence alignments
-
Jaroszewski L, Rychlewski L, Li Z, Li W, Godzik A (2005) FFAS03: a server for profile-profile sequence alignments. Nucleic Acids Res 33: W284-288.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Jaroszewski, L.1
Rychlewski, L.2
Li, Z.3
Li, W.4
Godzik, A.5
-
29
-
-
0345062357
-
Universally conserved positions in protein folds: Reading evolutionary signals about stability, folding kinetics and function
-
Mirny LA, Shakhnovich EI (1999) Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function. J Mol Biol 291: 177-196.
-
(1999)
J Mol Biol
, vol.291
, pp. 177-196
-
-
Mirny, L.A.1
Shakhnovich, E.I.2
-
30
-
-
48249085311
-
The polybasic region of Rho GTPases defines the cleavage by Yersinia enterocolitica outer protein T (YopT)
-
Fueller F, Schmidt G (2008) The polybasic region of Rho GTPases defines the cleavage by Yersinia enterocolitica outer protein T (YopT). Protein Sci 17: 1456-1462.
-
(2008)
Protein Sci
, vol.17
, pp. 1456-1462
-
-
Fueller, F.1
Schmidt, G.2
-
32
-
-
0030926789
-
Molecular basis of symbiosis between Rhizobium and legumes
-
Freiberg C, Fellay R, Bairoch A, Broughton WJ, Rosenthal A, et al. (1997) Molecular basis of symbiosis between Rhizobium and legumes. Nature 387: 394-401.
-
(1997)
Nature
, vol.387
, pp. 394-401
-
-
Freiberg, C.1
Fellay, R.2
Bairoch, A.3
Broughton, W.J.4
Rosenthal, A.5
-
33
-
-
23144452044
-
The HHpred interactive server for protein homology detection and structure prediction
-
Soding J, Biegert A, Lupas AN (2005) The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res 33: W244-248.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Soding, J.1
Biegert, A.2
Lupas, A.N.3
-
34
-
-
33846033400
-
CDD: A conserved domain database for interactive domain family analysis
-
Marchler-Bauer A, Anderson JB, Derbyshire MK, DeWeese-Scott C, Gonzales NR, et al. (2007) CDD: a conserved domain database for interactive domain family analysis. Nucleic Acids Res 35: D237-240.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
Derbyshire, M.K.3
DeWeese-Scott, C.4
Gonzales, N.R.5
-
35
-
-
10044222704
-
CLANS: A Java application for visualizing protein families based on pairwise similarity
-
Frickey T, Lupas A (2004) CLANS: a Java application for visualizing protein families based on pairwise similarity. Bioinformatics 20: 3702-3704.
-
(2004)
Bioinformatics
, vol.20
, pp. 3702-3704
-
-
Frickey, T.1
Lupas, A.2
-
36
-
-
0037100671
-
MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform
-
Katoh K, Misawa K, Kuma K, Miyata T (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 30: 3059-3066.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3059-3066
-
-
Katoh, K.1
Misawa, K.2
Kuma, K.3
Miyata, T.4
-
37
-
-
45949107473
-
Recent developments in the MAFFT multiple sequence alignment program
-
Katoh K, Toh H (2008) Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform 9: 286-298.
-
(2008)
Brief Bioinform
, vol.9
, pp. 286-298
-
-
Katoh, K.1
Toh, H.2
-
38
-
-
0033824470
-
DaliLite workbench for protein structure comparison
-
Holm L, Park J (2000) DaliLite workbench for protein structure comparison. Bioinformatics 16: 566-567.
-
(2000)
Bioinformatics
, vol.16
, pp. 566-567
-
-
Holm, L.1
Park, J.2
|