메뉴 건너뛰기




Volumn 10, Issue 4, 2013, Pages 2747-2759

Spatial variability of particle-attached and free-living bacterial diversity in surface waters from the Mackenzie River to the Beaufort Sea (Canadian Arctic)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIUM; COMMUNITY STRUCTURE; GENERALIST; MICROBIAL COMMUNITY; OPEN OCEAN; RIVER WATER; SALINITY; SPATIAL VARIATION; SPECIALIST; SPECIES DIVERSITY; SURFACE WATER;

EID: 84887974722     PISSN: 17264170     EISSN: 17264189     Source Type: Journal    
DOI: 10.5194/bg-10-2747-2013     Document Type: Article
Times cited : (107)

References (72)
  • 1
    • 0342506808 scopus 로고    scopus 로고
    • Spatial and temporal variation in marine bacterioplankton diversity as shown by RFLP fingerprinting of PCR amplified 16S rDNA
    • DOI 10.1016/S0168-6496(97)00031-7, PII S0168649697000317
    • Acinas, S. G., Rodriguez-Valera, F., and Pedrós-Alió, C.: Spatial and temporal variation in marine bacterioplankton diversity as shown by RFLP fingerprinting of PCR amplified 16S rDNA, FEMS Microbiol. Ecol., 24, 27-40, doi:10.1111/j.1574-6941.1997.tb00420.x, 1997. (Pubitemid 27402260)
    • (1997) FEMS Microbiology Ecology , vol.24 , Issue.1 , pp. 27-40
    • Acinas, S.G.1    Rodriguez-Valera, F.2    Pedros-Alio, C.3
  • 2
    • 0032974993 scopus 로고    scopus 로고
    • Diversity of free-living and attached bacteria in offshore western Mediterranean waters as depicted by analysis of genes encoding 16S rRNA
    • Acinas, S. G., Antón, J., and Rodríguez-Valera, F.: Diversity of free-living and attached bacteria in offshore Western Mediterranean waters as depicted by analysis of genes encoding 16S rRNA, Appl. Environ. Microbiol., 65, 514-522, 1999. (Pubitemid 29075091)
    • (1999) Applied and Environmental Microbiology , vol.65 , Issue.2 , pp. 514-522
    • Acinas, S.G.1    Anton, J.2    Rodriguez-Valera, F.3
  • 3
    • 3042717827 scopus 로고    scopus 로고
    • Annual cycles of sea ice and phytoplankton in Cape Bathurst polynya, southeastern Beaufort Sea, Canadian Arctic
    • DOI 10.1029/2003GL018978 L08304 1-4
    • Arrigo, K. R. and van Dijken, G. L.: Annual cycles of sea ice and phytoplankton in Cape Bathurst polynya, southeastern Beaufort Sea, Canadian Arctic, Geophys. Res. Lett., 31, L08304, doi:10.1029/2003gl018978, 2004. (Pubitemid 38893038)
    • (2004) Geophysical Research Letters , vol.31 , Issue.8
    • Arrigo, K.R.1    Van Dijken, G.L.2
  • 4
    • 80053064537 scopus 로고    scopus 로고
    • Secular trends in arctic Ocean net primary production
    • doi:10.1029/2011jc007151
    • Arrigo, K. R. and van Dijken, G. L.: Secular trends in Arctic Ocean net primary production, J. Geophys. Res.-Oceans, 116, C09011, doi:10.1029/ 2011jc007151, 2011.
    • (2011) J. Geophys. Res.-Oceans , vol.116
    • Arrigo, K.R.1    Van Dijken, G.L.2
  • 5
    • 34548718221 scopus 로고    scopus 로고
    • Microbial structuring of marine ecosystems
    • DOI 10.1038/nrmicro1747, PII NRMICRO1747
    • Azam, F. and Malfatti, F.: Microbial structuring of marine ecosystems, Nat. Rev. Micro., 5, 782-791, 2007. (Pubitemid 47423766)
    • (2007) Nature Reviews Microbiology , vol.5 , Issue.10 , pp. 782-791
    • Azam, F.1    Malfatti, F.2
  • 6
    • 34249763808 scopus 로고
    • Bacteria-organic matter coupling and its significance for Oceanic carbon cycling
    • doi:10.1007/bf00166806
    • Azam, F., and Smith, D. C., Steward, G. F., and Hagstrom, A.: Bacteria-organic matter coupling and its significance for oceanic carbon cycling Microb. Ecol., 28, 167-179, doi:10.1007/bf00166806, 1994.
    • (1994) Microb. Ecol. , vol.28 , pp. 167-179
    • Azam, F.1    Smith, D.C.2    Steward, G.F.3    Hagstrom, A.4
  • 7
    • 79958261866 scopus 로고    scopus 로고
    • Bottom-up versus top-down control of hypo- and epilimnion ffree-living bacterial community structures in two neighboring freshwater lakes
    • doi:10.1128/aem.02739-10
    • Berdjeb, L., Ghiglione, J.-F., and Jacquet, S.: Bottom-up versus top-down control of hypo- and epilimnion Ffree-living bacterial community structures in two neighboring freshwater lakes, Appl. Environ. Microbiol., 77, 3591-3599, doi:10.1128/aem.02739-10, 2011.
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 3591-3599
    • Berdjeb, L.1    Ghiglione, J.-F.2    Jacquet, S.3
  • 9
    • 84881542272 scopus 로고    scopus 로고
    • Summer community structure of aerobic anoxygenic phototrophic bacteria in the western arctic Ocean
    • in press
    • Boeuf, D., and Cottrell, M. T., Kirchman, D. L., Lebaron, P., and Jeanthon, C.: Summer community structure of aerobic anoxygenic phototrophic bacteria in the western Arctic Ocean, FEMS Microbiol. Ecol., in press, 2013.
    • (2013) FEMS Microbiol. Ecol.
    • Boeuf, D.1    Cottrell, M.T.2    Kirchman, D.L.3    Lebaron, P.4    Jeanthon, C.5
  • 10
    • 84876056048 scopus 로고    scopus 로고
    • Bacterial diversity, community structure and potential growth rates along an estuarine salinity gradient
    • Campbell, B. J. and Kirchman, D. L.: Bacterial diversity, community structure and potential growth rates along an estuarine salinity gradient, ISME J., 7, 10-220, 2012.
    • (2012) ISME J. , vol.7 , pp. 10-220
    • Campbell, B.J.1    Kirchman, D.L.2
  • 11
    • 75249107844 scopus 로고    scopus 로고
    • PyNAST: A flexible tool for aligning sequences to a template alignment
    • doi:10.1093/bioinformatics/btp636
    • Caporaso, J. G., Bittinger, K., Bushman, F. D., and DeSantis, T. Z., Andersen, G. L., and Knight, R.: PyNAST: a flexible tool for aligning sequences to a template alignment, Bioinformatics, 26, 266-267, doi:10.1093/ bioinformatics/btp636, 2010.
    • (2010) Bioinformatics , vol.26 , pp. 266-267
    • Caporaso, J.G.1    Bittinger, K.2    Bushman, F.D.3    DeSantis, T.Z.4    Andersen, G.L.5    Knight, R.6
  • 12
    • 84900996103 scopus 로고    scopus 로고
    • Arctic climate impact assessment (ACIA), in: Encyclopedia of earth
    • edited by: Cleveland, C. J National Council for Science and the Environment, Washington, DC
    • Corell, R. W. and Cleveland, C.: Arctic Climate Impact Assessment (ACIA), in: Encyclopedia of Earth, edited by: Cleveland, C. J., Environmental Information Coalition, National Council for Science and the Environment, Washington, DC, 2010.
    • (2010) Environmental Information Coalition
    • Corell, R.W.1    Cleveland, C.2
  • 13
    • 84901011957 scopus 로고    scopus 로고
    • Taxonomic composition of the particle attached and free-living bacterial assemblages in the northwest mediterranean sea analyzed by pyrosequencing of the 16S rRNA
    • in press, doi:10.1111/1574-6941.12130
    • Crespo, B. G., Pommier, T., Fernández-Gómez, B., and Pedrós-Alió, C. Taxonomic composition of the particle attached and free-living bacterial assemblages in the Northwest Mediterranean Sea analyzed by pyrosequencing of the 16S rRNA, FEMS Microbiol. Ecol., in press, doi:10.1111/1574-6941.12130, 2013.
    • (2013) FEMS Microbiol. Ecol.
    • Crespo, B.G.1    Pommier, T.2    Fernández-Gómez, B.3    Pedrós-Alió, C.4
  • 14
    • 0542396668 scopus 로고    scopus 로고
    • Dominance of particle-attached bacteria in the Columbia River estuary, USA
    • Crump, B. C., and Baross, J. A., and Simenstad, C. A.: Dominance of particle-attached bacteria in the Columbia River estuary, USA, Aquat. Microb. Ecol., 14, 7-18, 1998. (Pubitemid 128474839)
    • (1998) Aquatic Microbial Ecology , vol.14 , Issue.1 , pp. 7-18
    • Crump, B.C.1    Baross, J.A.2    Simenstad, C.A.3
  • 15
    • 0032976388 scopus 로고    scopus 로고
    • Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia River, its estuary, and the adjacent coastal ocean
    • Crump, B. C., and Armbrust, E. V., and Baross, J. A.: Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia river, its estuary, and the adjacent coastal ocean, Appl. Environ. Microbiol., 65, 3192-3204, 1999. (Pubitemid 29315598)
    • (1999) Applied and Environmental Microbiology , vol.65 , Issue.7 , pp. 3192-3204
    • Crump, B.C.1    Armbrust, E.V.2    Baross, J.A.3
  • 16
    • 0242516474 scopus 로고    scopus 로고
    • The biogeochemistry of the river and shelf ecosystem of the Arctic Ocean: A review
    • Dittmar, T. and Kattner, G.: The biogeochemistry of the river and shelf ecosystem of the Arctic Ocean: a review, Mar. Chem., 83, 103-120, doi:10.1016/s0304-4203(03)00105-1, 2003. (Pubitemid 37545909)
    • (2003) Marine Chemistry , vol.83 , Issue.3-4 , pp. 103-120
    • Dittmar, T.1    Kattner, G.2
  • 17
    • 84865766001 scopus 로고    scopus 로고
    • Optical characterisation of suspended particles in the mackenzie river plume (Canadian arctic Ocean) and implications for Ocean colour remote sensing
    • doi:10.5194/bg-9-3213-2012
    • Doxaran, D., Ehn, J., Bélanger, S., Matsuoka, A., Hooker, S., and Babin, M.: Optical characterisation of suspended particles in the Mackenzie River plume (Canadian Arctic Ocean) and implications for ocean colour remote sensing, Biogeosciences, 9, 3213-3229, doi:10.5194/bg-9-3213-2012, 2012.
    • (2012) Biogeosciences , vol.9 , pp. 3213-3229
    • Doxaran, D.1    Ehn, J.2    Bélanger, S.3    Matsuoka, A.4    Hooker, S.5    Babin, M.6
  • 18
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • doi:10.1093/bioinformatics/btq461
    • Edgar, R. C.: Search and clustering orders of magnitude faster than BLAST, Bioinformatics, 26, 2460-2461, doi:10.1093/bioinformatics/btq461, 2010.
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 19
    • 80051921096 scopus 로고    scopus 로고
    • Compositional differences in particle-associated and free-living microbial assemblages from an extreme deep-ocean environment
    • doi:10.1111/j.1758-2229.2010.00223.x
    • Eloe, E. A., and Shulse, C. N., Fadrosh, D. W., Williamson, S. J., and Allen, E. E., and Bartlett, D. H.: Compositional differences in particle-associated and free-living microbial assemblages from an extreme deep-ocean environment, Environ. Microbiol. Rep., 3, 449-458, doi:10.1111/j.1758-2229.2010.00223.x, 2011.
    • (2011) Environ. Microbiol. Rep. , vol.3 , pp. 449-458
    • Eloe, E.A.1    Shulse, C.N.2    Fadrosh, D.W.3    Williamson, S.J.4    Allen, E.E.5    Bartlett, D.H.6
  • 20
    • 51849135024 scopus 로고    scopus 로고
    • The annual cycle of particulate organic carbon export in franklin bay (Canadian arctic): Environmental control and food web implications
    • doi:10.1029/2007jc004262
    • Forest, A., Sampei, M., Makabe, R., Sasaki, H., and Barber, D. G., Gratton, Y., Wassmann, P., and Fortier, L.: The annual cycle of particulate organic carbon export in Franklin Bay (Canadian Arctic): Environmental control and food web implications, J. Geophys. Res.-Oceans, 113, C03505, doi:10.1029/2007jc004262, 2008.
    • (2008) J. Geophys. Res.-Oceans , vol.113
    • Forest, A.1    Sampei, M.2    Makabe, R.3    Sasaki, H.4    Barber, D.G.5    Gratton, Y.6    Wassmann, P.7    Fortier, L.8
  • 22
    • 81155125185 scopus 로고    scopus 로고
    • Metabolic strategies of free-living and aggregate-associated bacterial communities inferred from biologic and chemical profiles in the black sea suboxic zone
    • Fuchsman, C. A., and Kirkpatrick, J. B., Brazelton, W. J., Murray, J. W., and Staley, J. T.: Metabolic strategies of free-living and aggregate-associated bacterial communities inferred from biologic and chemical profiles in the Black Sea suboxic zone, FEMS Microbiol.Ecol., 78, 586-603, 2012.
    • (2012) FEMS Microbiol.Ecol. , vol.78 , pp. 586-603
    • Fuchsman, C.A.1    Kirkpatrick, J.B.2    Brazelton, W.J.3    Murray, J.W.4    Staley, J.T.5
  • 23
    • 43949144582 scopus 로고    scopus 로고
    • Microbial community diversity and heterotrophic production in a coastal Arctic ecosystem: A stamukhi lake and its source waters
    • Galand, P. E., Lovejoy, C., Pouliot, J., Garneau, M. E., and Vincent, W. F.: Microbial community diversity and heterotrophic production in a coastal Arctic ecosystem: A stamukhi lake and its source waters, Limnol. Oceanogr., 53, 813-823, doi:10.4319/lo.2008.53.2.0813, 2008. (Pubitemid 351705429)
    • (2008) Limnology and Oceanography , vol.53 , Issue.2 , pp. 813-823
    • Galand, P.E.1    Lovejoy, C.2    Pouliot, J.3    Garneau, M.-E.4    Vincent, W.F.5
  • 24
    • 33644632151 scopus 로고    scopus 로고
    • Prokaryotic community structure and heterotrophic production in a river-influenced coastal arctic ecosystem
    • doi:10.3354/ame042027
    • Garneau, M. E., and Vincent, W. F., Alonso-Saez, L., Gratton, Y., and Lovejoy, C.: Prokaryotic community structure and heterotrophic production in a river-influenced coastal arctic ecosystem, Aquat. Microb. Ecol., 42, 27-40, doi:10.3354/ame042027, 2006.
    • (2006) Aquat. Microb. Ecol. , vol.42 , pp. 27-40
    • Garneau, M.E.1    Vincent, W.F.2    Alonso-Saez, L.3    Gratton, Y.4    Lovejoy, C.5
  • 25
    • 58049131162 scopus 로고    scopus 로고
    • Importance of particle-associated bacterial heterotrophy in a coastal arctic ecosystem
    • doi:10.1016/j.jmarsys.2008.09.002
    • Garneau, M. E., and Vincent, W. F., Terrado, R., and Lovejoy, C.: Importance of particle-associated bacterial heterotrophy in a coastal Arctic ecosystem, J. Mar. Syst., 75, 185-197, doi:10.1016/j.jmarsys.2008.09.002, 2009.
    • (2009) J. Mar. Syst. , vol.75 , pp. 185-197
    • Garneau, M.E.1    Vincent, W.F.2    Terrado, R.3    Lovejoy, C.4
  • 26
    • 84857912584 scopus 로고    scopus 로고
    • Pronounced summer to winter differences and higher wintertime richness in coastal antarctic marine bacterioplankton
    • doi:10.1111/j.1462-2920.2011.02601.x
    • Ghiglione, J. F. and Murray, A. E.: Pronounced summer to winter differences and higher wintertime richness in coastal Antarctic marine bacterioplankton, Environ. Microbiol., 14, 617-629, doi:10.1111/j.1462-2920. 2011.02601.x, 2012.
    • (2012) Environ. Microbiol. , vol.14 , pp. 617-629
    • Ghiglione, J.F.1    Murray, A.E.2
  • 27
    • 27844571900 scopus 로고    scopus 로고
    • Spatial and temporal scales of variation in bacterioplankton community structure in the NW Mediterranean Sea
    • Ghiglione, J. F., Larcher, M., and Lebaron, P.: Spatial and temporal scales of variation in bacterioplankton community structure in the NW Mediterranean Sea, Aquat. Microb. Ecol., 40, 229-240, doi:10.3354/ame040229, 2005. (Pubitemid 41652965)
    • (2005) Aquatic Microbial Ecology , vol.40 , Issue.3 , pp. 229-240
    • Ghiglione, J.-F.1    Larcher, M.2    Lebaron, P.3
  • 28
    • 34547586997 scopus 로고    scopus 로고
    • Diel and seasonal variations in abundance, activity, and community structure of particle-attached and free-living bacteria in NW Mediterranean Sea
    • DOI 10.1007/s00248-006-9189-7
    • Ghiglione, J. F., Mevel, G., Pujo-Pay, M., Mousseau, L., Lebaron, P., and Goutx, M.: Diel and seasonal variations in abundance, activity, and community structure of particle-attached and free-living bacteria in NW Mediterranean Sea, Microb. Ecol., 54, 217-231, 2007. (Pubitemid 47197896)
    • (2007) Microbial Ecology , vol.54 , Issue.2 , pp. 217-231
    • Ghiglione, J.F.1    Mevel, G.2    Pujo-Pay, M.3    Mousseau, L.4    Lebaron, P.5    Goutx, M.6
  • 29
    • 58049142608 scopus 로고    scopus 로고
    • Role of environmental factors for the vertical distribution (0-1000 m) of marine bacterial communities in the NW mediterranean sea
    • doi:10.5194/bg-5-1751-2008
    • Ghiglione, J. F., Palacios, C., Marty, J. C., Mével, G., Labrune, C., Conan, P., Pujo-Pay, M., Garcia, N., and Goutx, M.: Role of environmental factors for the vertical distribution (0-1000 m) of marine bacterial communities in the NW Mediterranean Sea, Biogeosciences, 5, 1751-1764, doi:10.5194/bg-5- 1751-2008, 2008.
    • (2008) Biogeosciences , vol.5 , pp. 1751-1764
    • Ghiglione, J.F.1    Palacios, C.2    Marty, J.C.3    Mével, G.4    Labrune, C.5    Conan, P.6    Pujo-Pay, M.7    Garcia, N.8    Goutx, M.9
  • 30
    • 69949167070 scopus 로고    scopus 로고
    • Diversity of total and active free-living vs. Particle-attached bacteria in the euphotic zone of the NW mediterranean sea
    • doi:10.1111/j.1574-6968.2009.01694.x
    • Ghiglione, J. F., Conan, P., and Pujo-Pay, M.: Diversity of total and active free-living vs. particle-attached bacteria in the euphotic zone of the NW Mediterranean Sea, FEMS Microbiol. Lett., 299, 9-21, doi:10.1111/j.1574-6968. 2009.01694.x, 2009.
    • (2009) FEMS Microbiol. Lett. , vol.299 , pp. 9-21
    • Ghiglione, J.F.1    Conan, P.2    Pujo-Pay, M.3
  • 32
  • 33
    • 0346499634 scopus 로고    scopus 로고
    • Use of Stable-Isotope Probing, Full-Cycle rRNA Analysis, and Fluorescence In Situ Hybridization-Microautoradiography to Study a Methanol-Fed Denitrifying Microbial Community
    • DOI 10.1128/AEM.70.1.588-596.2004
    • Ginige, M. P., Hugenholtz, P., Daims, H., Wagner, M., Keller, J., and Blackall, L. L.: Use of stable-isotope probing, full-cycle rRNA analysis, and fluorescence in situ hybridization-microautoradiography to study a methanol-fed denitrifying microbial community, Appl. Environ. Microbiol., 70, 588-596, doi:10.1128/aem.70.1.588-596.2004, 2004. (Pubitemid 38090252)
    • (2004) Applied and Environmental Microbiology , vol.70 , Issue.1 , pp. 588-596
    • Ginige, M.P.1    Hugenholtz, P.2    Daims, H.3    Wagner, M.4    Keller, J.5    Blackall, L.L.6
  • 34
    • 33751036734 scopus 로고    scopus 로고
    • 15N) composition of dissolved, colloidal, and particulate phases
    • DOI 10.1029/2005GB002593
    • Guo, L. D. and Macdonald, R. W.: Source and transport of terrigenous organic matter in the upper Yukon River: Evidence from isotope (delta C-13, Delta C-14, and delta N-15) composition of dissolved, colloidal, and particulate phases, Glob. Biogeochem. Cy., 20, GB2011, doi:10.1029/2005gb002593, 2006. (Pubitemid 44755534)
    • (2006) Global Biogeochemical Cycles , vol.20 , Issue.2
    • Guo, L.1    Macdonald, R.W.2
  • 35
    • 27844531604 scopus 로고    scopus 로고
    • Illustrating the importance of particulate organic matter to pelagic microbial abundance and community structure - An Arctic case study
    • Hodges, L. R., Bano, N., Hollibaugh, J. T., and Yager, P. L.: Illustrating the importance of particulate organic matter to pelagic microbial abundance and community structure - an Arctic case study, Aquat. Microb. Ecol., 40, 217-227, doi:10.3354/ame040217, 2005. (Pubitemid 41652964)
    • (2005) Aquatic Microbial Ecology , vol.40 , Issue.3 , pp. 217-227
    • Hodges, L.R.1    Bano, N.2    Hollibaugh, J.T.3    Yager, P.L.4
  • 36
    • 0034737224 scopus 로고    scopus 로고
    • Similarity of particle-associated and free-living bacterial communities in northern San Francisco Bay, California
    • Hollibaugh, J. T., and Wong, P. S., and Murrell, M. C.: Similarity of particle-associated and free-living bacterial communities in northern San Francisco Bay, California, Aquat. Microb. Ecol., 21, 103-114, doi:10.3354/ame021103, 2000. (Pubitemid 34235196)
    • (2000) Aquatic Microbial Ecology , vol.21 , Issue.2 , pp. 103-114
    • Hollibaugh, J.T.1    Wong, P.S.2    Murrell, M.C.3
  • 37
    • 68249111208 scopus 로고    scopus 로고
    • Diversity and abundance of freshwater actinobacteria along environmental gradients in the brackish northern baltic sea
    • doi:10.1111/j.1462-2920.2009.01925.x
    • Holmfeldt, K., Dziallas, C., Titelman, J., Pohlmann, K., and Grossart, H. P., and Riemann, L.: Diversity and abundance of freshwater Actinobacteria along environmental gradients in the brackish northern Baltic Sea, Environ. Microbiol., 11, 2042-2054, doi:10.1111/j.1462-2920.2009.01925.x, 2009.
    • (2009) Environ. Microbiol. , vol.11 , pp. 2042-2054
    • Holmfeldt, K.1    Dziallas, C.2    Titelman, J.3    Pohlmann, K.4    Grossart, H.P.5    Riemann, L.6
  • 38
    • 77955251092 scopus 로고    scopus 로고
    • Ironing out the wrinkles in the rare biosphere through improved OTU clustering
    • doi:10.1111/j.1462-2920.2010.02193.x
    • Huse, S. M., and Welch, D. M., Morrison, H. G., and Sogin, M. L.: Ironing out the wrinkles in the rare biosphere through improved OTU clustering, Environ. Microbiol., 12, 1889-1898, doi:10.1111/j.1462-2920.2010.02193.x, 2010.
    • (2010) Environ. Microbiol. , vol.12 , pp. 1889-1898
    • Huse, S.M.1    Welch, D.M.2    Morrison, H.G.3    Sogin, M.L.4
  • 39
    • 70449510744 scopus 로고    scopus 로고
    • Microbial populations responsive to denitrification-inducing conditions in rice paddy soil, as revealed by comparative 16S rRNA gene analysis
    • doi:10.1128/aem.01481-09
    • Ishii, S., Yamamoto, M., Kikuchi, M., Oshima, K., Hattori, M., Otsuka, S., and Senoo, K.: Microbial populations responsive to denitrification-inducing conditions in rice paddy soil, as revealed by comparative 16S rRNA gene analysis, Appl. Environ. Microbiol., 75, 7070-7078, doi:10.1128/aem.01481-09, 2009.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 7070-7078
    • Ishii, S.1    Yamamoto, M.2    Kikuchi, M.3    Oshima, K.4    Hattori, M.5    Otsuka, S.6    Senoo, K.7
  • 40
    • 70349459451 scopus 로고    scopus 로고
    • Comparison of free-living, suspended particle, and aggregate-associated bacterial and archaeal communities in the laptev sea
    • doi:10.3354/ame01317
    • Kellogg, C. T. E. and Deming, J. W.: Comparison of free-living, suspended particle, and aggregate-associated bacterial and archaeal communities in the Laptev Sea, Aquat. Microb. Ecol., 57, 1-18, doi:10.3354/ame01317, 2009.
    • (2009) Aquat. Microb. Ecol. , vol.57 , pp. 1-18
    • Kellogg, C.T.E.1    Deming, J.W.2
  • 41
    • 81255138048 scopus 로고    scopus 로고
    • Evidence for microbial attenuation of particle flux in the amundsen gulf and beaufort sea: Elevated hydrolytic enzyme activity on sinking aggregates
    • Kellogg, C. T. E., Carpenter, S., Renfro, A., Sallon, A., Michel, C., Cochran, J., and Deming, J.: Evidence for microbial attenuation of particle flux in the Amundsen Gulf and Beaufort Sea: elevated hydrolytic enzyme activity on sinking aggregates, Polar Biol., 34, 2007-2023, 2011.
    • (2011) Polar Biol. , vol.34 , pp. 2007-2023
    • Kellogg, C.T.E.1    Carpenter, S.2    Renfro, A.3    Sallon, A.4    Michel, C.5    Cochran, J.6    Deming, J.7
  • 42
    • 0027338308 scopus 로고
    • Estimating the growth rate of slowly-growing marine bacteria from RNA content
    • Kemp, P. F., Lee, S., and Laroche, J.: Estimating the growth rate of slowly-growing marine bacteria from RNA content, Appl. Environ. Microbiol., 59, 2594-2601, 1993.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 2594-2601
    • Kemp, P.F.1    Lee, S.2    Laroche, J.3
  • 43
    • 70350191411 scopus 로고    scopus 로고
    • Effects of suspended matter quality and virus abundance on microbial parameters: Experimental evidence from a large european river
    • doi:10.3354/ame01341
    • Kernegger, L., Zweimuller, I., and Peduzzi, P.: Effects of suspended matter quality and virus abundance on microbial parameters: experimental evidence from a large European river, Aquat. Microb. Ecol., 57, 161-173, doi:10.3354/ame01341, 2009.
    • (2009) Aquat. Microb. Ecol. , vol.57 , pp. 161-173
    • Kernegger, L.1    Zweimuller, I.2    Peduzzi, P.3
  • 44
    • 79961017025 scopus 로고    scopus 로고
    • Role of free-living and particle-attached bacteria in the recycling and export of organic material in the hudson bay system
    • Lapoussiere, A., Michel, C., Starr, M., Gosselin, M., and Poulin, M.: Role of free-living and particle-attached bacteria in the recycling and export of organic material in the Hudson Bay system, J. Mar. Syst., 88, 434-445, 2011.
    • (2011) J. Mar. Syst. , vol.88 , pp. 434-445
    • Lapoussiere, A.1    Michel, C.2    Starr, M.3    Gosselin, M.4    Poulin, M.5
  • 45
    • 77953595562 scopus 로고    scopus 로고
    • Effects of future climate change on primary productivity and export fluxes in the beaufort sea
    • doi:10.1029/2009jc005493
    • Lavoie, D., Denman, K.L., and Macdonald, R. W.: Effects of future climate change on primary productivity and export fluxes in the Beaufort Sea, J. Geophys. Res.-Oceans, 115, C04018, doi:10.1029/2009jc005493, 2010.
    • (2010) J. Geophys. Res.-Oceans , vol.115
    • Lavoie, D.1    Denman, K.L.2    Macdonald, R.W.3
  • 46
    • 84901062071 scopus 로고    scopus 로고
    • The fate of riverine nutrients on arctic shelves
    • doi:10.5194/bgd-9-13397-2012
    • Le Fouest, V., Babin, M., and Tremblay, J.-É.: The fate of riverine nutrients on Arctic shelves, Biogeosciences Discuss., 9, 13397-13437, doi:10.5194/bgd-9-13397-2012, 2012.
    • (2012) Biogeosciences Discuss. , vol.9 , pp. 13397-13437
    • Le Fouest, V.1    Babin, M.2    Tremblay, J.-E.3
  • 47
    • 0030623250 scopus 로고    scopus 로고
    • A sediment and organic carbon budget for the Canadian beaufort shelf
    • DOI 10.1016/S0025-3227(97)00106-0, PII S0025322797001060
    • Macdonald, R. W., and Solomon, S. M., Cranston, R. E., Welch, H. E., and Yunker, M. B., and Gobeil, C.: A sediment and organic carbon budget for the Canadian Beaufort shelf, Mar. Geol., 144, 255-273, doi:10.1016/s0025-3227(97) 00106-0, 1998. (Pubitemid 28107058)
    • (1998) Marine Geology , vol.144 , Issue.4 , pp. 255-273
    • Macdonald, R.W.1    Solomon, S.M.2    Cranston, R.E.3    Welch, H.E.4    Yunker, M.B.5    Gobeil, C.6
  • 49
    • 84865723419 scopus 로고    scopus 로고
    • Tracing the transport of colored dissolved organic matter in water masses of the southern beaufort sea: Relationship with hydrographic characteristics
    • doi:10.5194/bg-9-925-2012
    • Matsuoka, A., Bricaud, A., Benner, R., Para, J., Sempéré, R., Prieur, L., Bélanger, S., and Babin, M.: Tracing the transport of colored dissolved organic matter in water masses of the Southern Beaufort Sea: relationship with hydrographic characteristics, Biogeosciences, 9, 925-940, doi:10.5194/bg-9-925-2012, 2012.
    • (2012) Biogeosciences , vol.9 , pp. 925-940
    • Matsuoka, A.1    Bricaud, A.2    Benner, R.3    Para, J.4    Sempéré, R.5    Prieur, L.6    Bélanger, S.7    Babin, M.8
  • 50
    • 57049164165 scopus 로고    scopus 로고
    • Seasonal to hour variation scales in abundance and production of total and particle-attached bacteria in the open NW mediterranean sea (0-1000 m)
    • doi:10.5194/bg-5-1573-2008
    • Mével, G., Vernet, M., Goutx, M., and Ghiglione, J. F.: Seasonal to hour variation scales in abundance and production of total and particle-attached bacteria in the open NW Mediterranean Sea (0-1000 m), Biogeosciences, 5, 1573-1586, doi:10.5194/bg-5-1573-2008, 2008.
    • (2008) Biogeosciences , vol.5 , pp. 1573-1586
    • Mével, G.1    Vernet, M.2    Goutx, M.3    Ghiglione, J.F.4
  • 51
    • 0032991215 scopus 로고    scopus 로고
    • Bacterioplankton dynamics in northern San Francisco Bay: Role of particle association and seasonal freshwater flow
    • Murrell, M. C., and Hollibaugh, J. T., Silver, M. W., and Wong, P. S.: Bacterioplankton dynamics in northern San Francisco Bay: Role of particle association and seasonal freshwater flow, Limnol. Oceanogr., 44, 295-308, 1999. (Pubitemid 29150779)
    • (1999) Limnology and Oceanography , vol.44 , Issue.2 , pp. 295-308
    • Murrell, M.C.1    Hollibaugh, J.T.2    Silver, M.W.3    Wong, P.S.4
  • 52
    • 77952531778 scopus 로고    scopus 로고
    • Linkage between bacterial carbon processing and the structure of the active bacterial community at a coastal site in the NW mediterranean sea
    • doi:10.1007/s00248-009-9588-7
    • Obernosterer, I., Lami, R., Larcher, M., Batailler, N., Catala, P., and Lebaron, P.: Linkage between bacterial carbon processing and the structure of the active bacterial community at a coastal site in the NW Mediterranean Sea, Microb. Ecol., 59, 428-435, doi:10.1007/s00248-009-9588-7, 2010.
    • (2010) Microb. Ecol. , vol.59 , pp. 428-435
    • Obernosterer, I.1    Lami, R.2    Larcher, M.3    Batailler, N.4    Catala, P.5    Lebaron, P.6
  • 53
    • 84859445315 scopus 로고    scopus 로고
    • Evidence of heterotrophic prokaryotic activity limitation by nitrogen in the western arctic Ocean during summer
    • Ortega-Retuerta, E., Jeffrey, W., Ghiglione, J., and Joux, F.: Evidence of heterotrophic prokaryotic activity limitation by nitrogen in the Western Arctic Ocean during summer, Polar Biol., 35, 785-794, 2012a.
    • (2012) Polar Biol. , vol.35 , pp. 785-794
    • Ortega-Retuerta, E.1    Jeffrey, W.2    Ghiglione, J.3    Joux, F.4
  • 54
    • 84867537675 scopus 로고    scopus 로고
    • Carbon fluxes in the canadian arctic: Patterns and drivers of bacterial abundance, production and respiration on the beaufort sea margin
    • doi:10.5194/bg-9-3679-2012
    • Ortega-Retuerta, E., Jeffrey, W. H., Babin, M., Bélanger, S., Benner, R., Marie, D., Matsuoka, A., Raimbault, P., and Joux, F.: Carbon fluxes in the Canadian Arctic: patterns and drivers of bacterial abundance, production and respiration on the Beaufort Sea margin, Biogeosciences, 9, 3679-3692, doi:10.5194/bg-9-3679-2012, 2012b.
    • (2012) Biogeosciences , vol.9 , pp. 3679-3692
    • Ortega-Retuerta, E.1    Jeffrey, W.H.2    Babin, M.3    Bélanger, S.4    Benner, R.5    Marie, D.6    Matsuoka, A.7    Raimbault, P.8    Joux, F.9
  • 55
    • 80052600388 scopus 로고    scopus 로고
    • The changing arctic sea ice cover
    • Perovich, D. K.: The changing Arctic sea ice cover, Oceanography, 24, 162-173, 2011.
    • (2011) Oceanography , vol.24 , pp. 162-173
    • Perovich, D.K.1
  • 57
    • 79251565226 scopus 로고    scopus 로고
    • Removing noise from pyrosequenced amplicons
    • doi:10.1186/1471-2105-12-38
    • Quince, C., Lanzen, A., Davenport, R. J., and Turnbaugh, P. J.: Removing noise from pyrosequenced amplicons, BMC Bioinformatics, 12, 38, doi:10.1186/1471-2105-12-38, 2011.
    • (2011) BMC Bioinformatics , vol.12 , pp. 38
    • Quince, C.1    Lanzen, A.2    Davenport, R.J.3    Turnbaugh, P.J.4
  • 58
    • 0542442094 scopus 로고    scopus 로고
    • High phylogenetic diversity in a marine-snow-associated bacterial assemblage
    • Rath, J., and Wu, K. Y., Herndl, G. J., and DeLong, E. F.: High phylogenetic diversity in a marine-snow-associated bacterial assemblage, Aquat. Microb. Ecol., 14, 261-269, doi:10.3354/ame014261, 1998. (Pubitemid 128487636)
    • (1998) Aquatic Microbial Ecology , vol.14 , Issue.3 , pp. 261-269
    • Rath, J.1    Wu, K.Y.2    Herndl, G.J.3    DeLong, E.F.4
  • 59
    • 0037117809 scopus 로고    scopus 로고
    • Stability of bacterial and viral community compositions in Danish coastal waters as depicted by DNA fingerprinting techniques
    • Riemann, L. and Middelboe, M.: Stability of bacterial and viral community compositions in Danish coastal waters as depicted by DNA fingerprinting techniques, Aquat. Microb. Ecol., 27, 219-232, doi:10.3354/ame027219, 2002. (Pubitemid 34465937)
    • (2002) Aquatic Microbial Ecology , vol.27 , Issue.3 , pp. 219-232
    • Riemann, L.1    Middelboe, M.2
  • 60
    • 84869183789 scopus 로고    scopus 로고
    • Intense photooxidative degradation of planktonic and bacterial lipids in sinking particles collected with sediment traps across the canadian beaufort shelf (Arctic Ocean)
    • doi:10.5194/bg-9-4787-2012
    • Rontani, J.-F., Charriere, B., Forest, A., Heussner, S., Vaultier, F., Petit, M., Delsaut, N., Fortier, L., and Sempéré, R.: Intense photooxidative degradation of planktonic and bacterial lipids in sinking particles collected with sediment traps across the Canadian Beaufort Shelf (Arctic Ocean), Biogeosciences, 9, 4787-4802, doi:10.5194/bg-9-4787-2012, 2012.
    • (2012) Biogeosciences , vol.9 , pp. 4787-4802
    • Rontani, J.-F.1    Charriere, B.2    Forest, A.3    Heussner, S.4    Vaultier, F.5    Petit, M.6    Delsaut, N.7    Fortier, L.8    Sempéré, R.9
  • 61
    • 84867550404 scopus 로고    scopus 로고
    • Dissolved organic matter composition and bioavailability reflect ecosystem productivity in the western arctic Ocean
    • doi:10.5194/bg-9-4993-2012
    • Shen, Y., and Fichot, C. G., and Benner, R.: Dissolved organic matter composition and bioavailability reflect ecosystem productivity in the Western Arctic Ocean, Biogeosciences, 9, 4993-5005, doi:10.5194/bg-9-4993-2012, 2012.
    • (2012) Biogeosciences , vol.9 , pp. 4993-5005
    • Shen, Y.1    Fichot, C.G.2    Benner, R.3
  • 62
    • 0001123060 scopus 로고
    • A simple, economical method for measuring bacterial protein synthesis rates in seawater using 3H-leucine
    • Smith, D. C. and Azam, F.: A simple, economical method for measuring bacterial protein synthesis rates in seawater using 3H-leucine, Mar. Microb. Food Webs, 6, 107-114, 1992.
    • (1992) Mar. Microb. Food Webs , vol.6 , pp. 107-114
    • Smith, D.C.1    Azam, F.2
  • 63
    • 0026616183 scopus 로고
    • Intense hydrolytic enzyme activity on marine aggregates and implications for rapid particle dissolution
    • DOI 10.1038/359139a0
    • Smith, D. C., Simon, M., Alldredge, A.L., and Azam, F.: Intense hydrolytic enzyme-activity on marine aggregates and implications for rapid particle dissolution, Nature, 359, 139-142, doi:10.1038/359139a0, 1992. (Pubitemid 23374905)
    • (1992) Nature , vol.359 , Issue.6391 , pp. 139-142
    • Smith, D.C.1    Simon, M.2    Alldredge, A.L.3    Azam, F.4
  • 65
    • 79960039272 scopus 로고    scopus 로고
    • Tag-encoded FLX amplicon pyrosequencing for the elucidation of microbial and functional gene diversity in any environment
    • Sun, Y., and Wolcott, R. D., and Dowd, S. E.: Tag-encoded FLX amplicon pyrosequencing for the elucidation of microbial and functional gene diversity in any environment, Methods Mol. Biol., 733, 129-141, 2011.
    • (2011) Methods Mol. Biol. , vol.733 , pp. 129-141
    • Sun, Y.1    Wolcott, R.D.2    Dowd, S.E.3
  • 66
    • 77954835298 scopus 로고    scopus 로고
    • The effects of irradiance and nutrient supply on the productivity of arctic waters: A perspective on climate change
    • edited by: Nihoul, J. C. J. and Kostianoy, A. G., Springer, Dordrecht, Netherlands
    • Tremblay, J. E. and Gagnon, J.: The effects of irradiance and nutrient supply on the productivity of Arctic waters: A perspective on climate change, in: Influence of Climate Change on the Changing Arctic and SubArctic Conditions, edited by: Nihoul, J. C. J. and Kostianoy, A. G., Springer, Dordrecht, Netherlands, 73-93, 2009.
    • (2009) Influence of Climate Change on the Changing Arctic and SubArctic Conditions , pp. 73-93
    • Tremblay, J.E.1    Gagnon, J.2
  • 68
    • 55649095734 scopus 로고    scopus 로고
    • Bacterial production and microbial food web structure in a large arctic river and the coastal arctic Ocean
    • doi:10.1016/j.jmarsys.2007.12.002
    • Vallieres, C., Retamal, L., Ramlal, P., Osburn, C. L., and Vincent, W. F.: Bacterial production and microbial food web structure in a large arctic river and the coastal Arctic Ocean, J. Mar. Sys, 74, 756-773, doi:10.1016/j.jmarsys.2007.12.002, 2008.
    • (2008) J. Mar. Sys , vol.74 , pp. 756-773
    • Vallieres, C.1    Retamal, L.2    Ramlal, P.3    Osburn, C.L.4    Vincent, W.F.5
  • 69
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • DOI 10.1128/AEM.00062-07
    • Wang, Q., and Garrity, G. M., Tiedje, J. M., and Cole, J. R.: Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy, Appl. Environ. Microbiol., 73, 5261-5267, doi:10.1128/aem.00062-07, 2007. (Pubitemid 47326658)
    • (2007) Applied and Environmental Microbiology , vol.73 , Issue.16 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 70
    • 78650777994 scopus 로고    scopus 로고
    • Footprints of climate change in the arctic marine ecosystem
    • doi:10.1111/j.1365-2486.2010.02311.x
    • Wassmann, P., and Duarte, C. M., Agusti, S., and Sejr, M. K.: Footprints of climate change in the Arctic marine ecosystem, Glob. Change Biol., 17, 1235-1249, doi:10.1111/j.1365-2486.2010.02311.x, 2011.
    • (2011) Glob. Change Biol. , vol.17 , pp. 1235-1249
    • Wassmann, P.1    Duarte, C.M.2    Agusti, S.3    Sejr, M.K.4
  • 71
    • 84867746722 scopus 로고    scopus 로고
    • A metaproteomic assessment of winter and summer bacterioplankton from antarctic peninsula coastal surface waters
    • doi:10.1038/ismej.2012.28
    • Williams, T. J., Long, E., Evans, F., Demaere, M. Z., and Lauro, F. M., Raftery, M. J., Ducklow, H., Grzymski, J. J., and Murray, A. E., and Cavicchioli, R.: A metaproteomic assessment of winter and summer bacterioplankton from Antarctic Peninsula coastal surface waters, ISME J., 6, 1883-1900, doi:10.1038/ismej.2012.28, 2012.
    • (2012) ISME J. , vol.6 , pp. 1883-1900
    • Williams, T.J.1    Long, E.2    Evans, F.3    Demaere, M.Z.4    Lauro, F.M.5    Raftery, M.J.6    Ducklow, H.7    Grzymski, J.J.8    Murray, A.E.9    Cavicchioli, R.10
  • 72
    • 77956273380 scopus 로고    scopus 로고
    • Optical variability of seawater in relation to particle concentration, composition, and size distribution in the nearshore marine environment at imperial beach, California
    • doi:10.1029/2009JC005554
    • Wozniak, S. B., Stramski, D., Stramska, M., Reynolds, R. A., and Wright, V. M., Miksic, E. Y., Cichocka, M., and Cieplak, A. M.: Optical variability of seawater in relation to particle concentration, composition, and size distribution in the nearshore marine environment at Imperial Beach, California, J. Geophys. Res.-Oceans, 115, C08027, doi:10.1029/2009JC005554, 2010.
    • (2010) J. Geophys. Res.-Oceans , vol.115
    • Wozniak, S.B.1    Stramski, D.2    Stramska, M.3    Reynolds, R.A.4    Wright, V.M.5    Miksic, E.Y.6    Cichocka, M.7    Cieplak, A.M.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.