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Volumn 3, Issue 4, 2011, Pages 449-458

Compositional differences in particle-associated and free-living microbial assemblages from an extreme deep-ocean environment

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEA; BACTERIA (MICROORGANISMS); BACTEROIDETES; BASIDIOMYCOTA; BURKHOLDERIALES; CAULOBACTERALES; CHROMALVEOLATA; DIPLONEMIDA; EUKARYOTA; EXCAVATA; FUNGI; GEMMATIMONADETES; MASTIGOPHORA (FLAGELLATES); MYXOCOCCALES; PLANCTOMYCETES; RHIZARIA; RHODOBACTERALES; UNCLASSIFIED MYXOCOCCALES; XANTHOMONADALES;

EID: 80051921096     PISSN: None     EISSN: 17582229     Source Type: Journal    
DOI: 10.1111/j.1758-2229.2010.00223.x     Document Type: Article
Times cited : (149)

References (53)
  • 2
    • 67949124536 scopus 로고    scopus 로고
    • Microbial oceanography of the dark ocean's pelagic realm
    • Arístegui, J., Gasol, J.M., Duarte, C.M., and Herndl, G.J. (2009) Microbial oceanography of the dark ocean's pelagic realm. Limnol Oceanogr 54: 1501-1529.
    • (2009) Limnol Oceanogr , vol.54 , pp. 1501-1529
    • Arístegui, J.1    Gasol, J.M.2    Duarte, C.M.3    Herndl, G.J.4
  • 3
    • 76349125984 scopus 로고    scopus 로고
    • Global ecological patterns in uncultured Archaea
    • Auguet, J.C., Barberan, A., and Casamayor, E.O. (2009) Global ecological patterns in uncultured Archaea. ISME J 4: 182-190.
    • (2009) ISME J , vol.4 , pp. 182-190
    • Auguet, J.C.1    Barberan, A.2    Casamayor, E.O.3
  • 5
    • 77952418511 scopus 로고    scopus 로고
    • Role of macroscopic particles in deep-sea oxygen consumption
    • Bochdansky, A.B., van Aken, H.M., and Herndl, G.J. (2010) Role of macroscopic particles in deep-sea oxygen consumption. Proc Natl Acad Sci USA 107: 8287-8291.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 8287-8291
    • Bochdansky, A.B.1    van Aken, H.M.2    Herndl, G.J.3
  • 6
    • 24644489650 scopus 로고    scopus 로고
    • Vertical motions of the Puerto Rico Trench and Puerto Rico and their cause
    • ten Brink, U. (2005) Vertical motions of the Puerto Rico Trench and Puerto Rico and their cause. J Geophys Res 110: B06404.
    • (2005) J Geophys Res , vol.110
    • ten Brink, U.1
  • 9
    • 0032976388 scopus 로고    scopus 로고
    • Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia river, its estuary, and the adjacent coastal ocean
    • Crump, B.C., Armbrust, E.V., and Baross, J.A. (1999) Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia river, its estuary, and the adjacent coastal ocean. Appl Environ Microbiol 65: 3192-3204.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 3192-3204
    • Crump, B.C.1    Armbrust, E.V.2    Baross, J.A.3
  • 10
    • 0027801562 scopus 로고
    • Phylogenetic diversity of aggregate-attached vs. free-living marine bacterial assemblages
    • DeLong, E.F., Franks, D.G., and Alldredge, A.L. (1993) Phylogenetic diversity of aggregate-attached vs. free-living marine bacterial assemblages. Limnol Oceanogr 38: 924-934.
    • (1993) Limnol Oceanogr , vol.38 , pp. 924-934
    • DeLong, E.F.1    Franks, D.G.2    Alldredge, A.L.3
  • 11
    • 31544483932 scopus 로고    scopus 로고
    • Community genomics among stratified microbial assemblages in the ocean's interior
    • DeLong, E.F., Preston, C.M., Mincer, T., Rich, V., Hallam, S.J., Frigaard, N.U., etal. (2006) Community genomics among stratified microbial assemblages in the ocean's interior. Science 311: 496-503.
    • (2006) Science , vol.311 , pp. 496-503
    • DeLong, E.F.1    Preston, C.M.2    Mincer, T.3    Rich, V.4    Hallam, S.J.5    Frigaard, N.U.6
  • 13
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 14
    • 0003437299 scopus 로고    scopus 로고
    • Distributed by the author. Seattle, WA, USA: Department of Genome Sciences, University of Washington
    • Felsenstein, J. (2005) PHYLIP (Phylogeny Inference Package) Version 3.6. Distributed by the author. Seattle, WA, USA: Department of Genome Sciences, University of Washington.
    • (2005) PHYLIP (Phylogeny Inference Package) Version 3.6
    • Felsenstein, J.1
  • 16
    • 0842282075 scopus 로고    scopus 로고
    • Spatio-temporal variability and diversity of water column prokaryotic communities in the eastern North Atlantic
    • Gallagher, J.M., Carton, M.W., Eardly, D.F., and Patching, J.W. (2004) Spatio-temporal variability and diversity of water column prokaryotic communities in the eastern North Atlantic. FEMS Microbiol Ecol 47: 249-262.
    • (2004) FEMS Microbiol Ecol , vol.47 , pp. 249-262
    • Gallagher, J.M.1    Carton, M.W.2    Eardly, D.F.3    Patching, J.W.4
  • 17
    • 34547586997 scopus 로고    scopus 로고
    • Diel and seasonal variations in abundance, activity, and community structure of particle-attached and free-living bacteria in NW Mediterranean Sea
    • Ghiglione, J.F., Mevel, G., Pujo-Pay, M., Mousseau, L., Lebaron, P., and Goutx, M. (2007) Diel and seasonal variations in abundance, activity, and community structure of particle-attached and free-living bacteria in NW Mediterranean Sea. Microb Ecol 54: 217-231.
    • (2007) Microb Ecol , vol.54 , pp. 217-231
    • Ghiglione, J.F.1    Mevel, G.2    Pujo-Pay, M.3    Mousseau, L.4    Lebaron, P.5    Goutx, M.6
  • 18
    • 0029667158 scopus 로고    scopus 로고
    • Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific Oceans
    • Gordon, D.A., and Giovannoni, S.J. (1996) Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific Oceans. Appl Environ Microbiol 62: 1171-1177.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 1171-1177
    • Gordon, D.A.1    Giovannoni, S.J.2
  • 19
    • 70349559205 scopus 로고    scopus 로고
    • Hydrostatic pressure affects physiology and community structure of marine bacteria during settling to 4000 m: an experimental approach
    • Grossart, H.P., and Gust, G. (2009) Hydrostatic pressure affects physiology and community structure of marine bacteria during settling to 4000 m: an experimental approach. Mar Ecol Prog Ser 390: 97-104.
    • (2009) Mar Ecol Prog Ser , vol.390 , pp. 97-104
    • Grossart, H.P.1    Gust, G.2
  • 20
    • 55849101172 scopus 로고    scopus 로고
    • Widespread occurrence and genetic diversity of marine parasitoids belonging to Syndiniales (Alveolata)
    • Guillou, L., Viprey, M., Chambouvet, A., Welsh, R.M., Kirkham, A.R., Massana, R., etal. (2008) Widespread occurrence and genetic diversity of marine parasitoids belonging to Syndiniales (Alveolata). Environ Microbiol 10: 3349-3365.
    • (2008) Environ Microbiol , vol.10 , pp. 3349-3365
    • Guillou, L.1    Viprey, M.2    Chambouvet, A.3    Welsh, R.M.4    Kirkham, A.R.5    Massana, R.6
  • 21
    • 77949849861 scopus 로고    scopus 로고
    • Dissolved organic matter in the ocean: a controversy stimulates new insights
    • Hansell, D.A., Carlson, C.A., Repeta, D.J., and Schlitzer, R. (2009) Dissolved organic matter in the ocean: a controversy stimulates new insights. Oceanography 22: 202-211.
    • (2009) Oceanography , vol.22 , pp. 202-211
    • Hansell, D.A.1    Carlson, C.A.2    Repeta, D.J.3    Schlitzer, R.4
  • 24
    • 0032962550 scopus 로고    scopus 로고
    • Long-term hydrographic changes at 52 and 66 degrees W in the North Atlantic Subtropical Gyre & Caribbean
    • Joyce, T.M., Pickart, R.S., and Millard, R.C. (1999) Long-term hydrographic changes at 52 and 66 degrees W in the North Atlantic Subtropical Gyre & Caribbean. Deep Sea Res Part II Top Stud Oceanogr 46: 245-278.
    • (1999) Deep Sea Res Part II Top Stud Oceanogr , vol.46 , pp. 245-278
    • Joyce, T.M.1    Pickart, R.S.2    Millard, R.C.3
  • 25
    • 53849115701 scopus 로고    scopus 로고
    • Genomic patterns of recombination, clonal divergence and environment in marine microbial populations
    • Konstantinidis, K.T., and DeLong, E.F. (2008) Genomic patterns of recombination, clonal divergence and environment in marine microbial populations. ISME J 2: 1052-1065.
    • (2008) ISME J , vol.2 , pp. 1052-1065
    • Konstantinidis, K.T.1    DeLong, E.F.2
  • 26
    • 68549085316 scopus 로고    scopus 로고
    • Comparative Metagenomic analysis of a microbial community residing at a depth of 4000 meters at station ALOHA in the north Pacific subtropical gyre
    • Konstantinidis, K.T., Braff, J., Karl, D.M., and DeLong, E.F. (2009) Comparative Metagenomic analysis of a microbial community residing at a depth of 4000 meters at station ALOHA in the north Pacific subtropical gyre. Appl Environ Microbiol 75: 5345-5355.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 5345-5355
    • Konstantinidis, K.T.1    Braff, J.2    Karl, D.M.3    DeLong, E.F.4
  • 27
    • 67349114821 scopus 로고    scopus 로고
    • Cultivation-independent assessment of the bathypelagic archaeal diversity of Tyrrhenian Sea: comparative study of rDNA and rRNA-derived libraries and influence of sample decompression
    • La Cono, V., Tamburini, C., Genovese, L., La Spada, G., Denaro, R., and Yakimov, M.M. (2009) Cultivation-independent assessment of the bathypelagic archaeal diversity of Tyrrhenian Sea: comparative study of rDNA and rRNA-derived libraries and influence of sample decompression. Deep Sea Res Part II 56: 768-773.
    • (2009) Deep Sea Res Part II , vol.56 , pp. 768-773
    • La Cono, V.1    Tamburini, C.2    Genovese, L.3    La Spada, G.4    Denaro, R.5    Yakimov, M.M.6
  • 28
    • 58149232402 scopus 로고    scopus 로고
    • Pan-oceanic distribution of new highly diverse clades of deep-sea diplonemids
    • Lara, E., Moreira, D., Vereshchaka, A., and López-García, P. (2009) Pan-oceanic distribution of new highly diverse clades of deep-sea diplonemids. Environ Microbiol 11: 47-55.
    • (2009) Environ Microbiol , vol.11 , pp. 47-55
    • Lara, E.1    Moreira, D.2    Vereshchaka, A.3    López-García, P.4
  • 29
    • 38049006515 scopus 로고    scopus 로고
    • Prokaryotic lifestyles in deep sea habitats
    • Lauro, F.M., and Bartlett, D.H. (2008) Prokaryotic lifestyles in deep sea habitats. Extremophiles 12: 15-25.
    • (2008) Extremophiles , vol.12 , pp. 15-25
    • Lauro, F.M.1    Bartlett, D.H.2
  • 34
    • 0035133741 scopus 로고    scopus 로고
    • Horizontal and vertical complexity of attached and free-living bacteria of the eastern Mediterranean Sea, determined by 16S rDNA and 16S rRNA fingerprints
    • Moeseneder, M.M., Winter, C., and Herndl, G.J. (2001) Horizontal and vertical complexity of attached and free-living bacteria of the eastern Mediterranean Sea, determined by 16S rDNA and 16S rRNA fingerprints. Limnol Oceanogr 46: 95-107.
    • (2001) Limnol Oceanogr , vol.46 , pp. 95-107
    • Moeseneder, M.M.1    Winter, C.2    Herndl, G.J.3
  • 36
    • 33144484401 scopus 로고    scopus 로고
    • Characterization of bacterial communities associated with deep-sea corals on Gulf of Alaska seamounts
    • Penn, K., Wu, D.Y., Eisen, J.A., and Ward, N. (2006) Characterization of bacterial communities associated with deep-sea corals on Gulf of Alaska seamounts. Appl Environ Microbiol 72: 1680-1683.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 1680-1683
    • Penn, K.1    Wu, D.Y.2    Eisen, J.A.3    Ward, N.4
  • 37
    • 48749116908 scopus 로고    scopus 로고
    • Phylogenetic analyses of ribosomal DNA-containing bacterioplankton genome fragments from a 4000 m vertical profile in the North Pacific Subtropical Gyre
    • Pham, V.D., Konstantinidis, K.T., Palden, T., and DeLong, E.F. (2008) Phylogenetic analyses of ribosomal DNA-containing bacterioplankton genome fragments from a 4000 m vertical profile in the North Pacific Subtropical Gyre. Environ Microbiol 10: 2313-2330.
    • (2008) Environ Microbiol , vol.10 , pp. 2313-2330
    • Pham, V.D.1    Konstantinidis, K.T.2    Palden, T.3    DeLong, E.F.4
  • 38
    • 67649327176 scopus 로고    scopus 로고
    • FastTree: computing large minimum evolution trees with profiles instead of a distance matrix
    • Price, M.N., Dehal, P.S., and Arkin, A.P. (2009) FastTree: computing large minimum evolution trees with profiles instead of a distance matrix. Mol Biol Evol 26: 1641-1650.
    • (2009) Mol Biol Evol , vol.26 , pp. 1641-1650
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 39
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse, E., Quast, C., Knittel, K., Fuchs, B.M., Ludwig, W.G., Peplies, J., and Glockner, F.O. (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35: 7188-7196.
    • (2007) Nucleic Acids Res , vol.35 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3    Fuchs, B.M.4    Ludwig, W.G.5    Peplies, J.6    Glockner, F.O.7
  • 40
    • 33744901143 scopus 로고    scopus 로고
    • Prokaryotic respiration and production in the meso- and bathypelagic realm of the eastern and western North Atlantic basin
    • Reinthaler, T., van Aken, H., Veth, C., Arístegui, J., Robinson, C., Williams, P., etal. (2006) Prokaryotic respiration and production in the meso- and bathypelagic realm of the eastern and western North Atlantic basin. Limnol Oceanogr 51: 1262-1273.
    • (2006) Limnol Oceanogr , vol.51 , pp. 1262-1273
    • Reinthaler, T.1    van Aken, H.2    Veth, C.3    Arístegui, J.4    Robinson, C.5    Williams, P.6
  • 41
    • 33947238287 scopus 로고    scopus 로고
    • The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific
    • Rusch, D.B., Halpern, A.L., Sutton, G., Heidelberg, K.B., Williamson, S., Yooseph, S., etal. (2007) The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific. PLoS Biol 5: 398-431.
    • (2007) PLoS Biol , vol.5 , pp. 398-431
    • Rusch, D.B.1    Halpern, A.L.2    Sutton, G.3    Heidelberg, K.B.4    Williamson, S.5    Yooseph, S.6
  • 42
    • 76249134266 scopus 로고    scopus 로고
    • Large-scale patterns in biodiversity of microbial eukaryotes from the abyssal sea floor
    • Scheckenbach, F., Hausmann, K., Wylezich, C., Weitere, M., and Arndt, H. (2010) Large-scale patterns in biodiversity of microbial eukaryotes from the abyssal sea floor. Proc Natl Acad Sci USA 107: 115-120.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 115-120
    • Scheckenbach, F.1    Hausmann, K.2    Wylezich, C.3    Weitere, M.4    Arndt, H.5
  • 43
    • 0036883627 scopus 로고    scopus 로고
    • Interactive analysis and visualization of geoscience data with Ocean Data View
    • Schlitzer, R. (2002) Interactive analysis and visualization of geoscience data with Ocean Data View. Comput Geosci 28: 1211-1218.
    • (2002) Comput Geosci , vol.28 , pp. 1211-1218
    • Schlitzer, R.1
  • 44
    • 15444362001 scopus 로고    scopus 로고
    • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
    • Schloss, P.D., and Handelsman, J. (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71: 1501-1506.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 45
    • 0035463837 scopus 로고    scopus 로고
    • Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples
    • Singleton, D.R., Furlong, M.A., Rathbun, S.L., and Whitman, W.B. (2001) Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples. Appl Environ Microbiol 67: 4374-4376.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 4374-4376
    • Singleton, D.R.1    Furlong, M.A.2    Rathbun, S.L.3    Whitman, W.B.4
  • 47
    • 0037647479 scopus 로고    scopus 로고
    • Subduction zones
    • Stern, R.J. (2002) Subduction zones. Rev Geophys 40: 42.
    • (2002) Rev Geophys , vol.40 , pp. 42
    • Stern, R.J.1
  • 49
    • 20044393188 scopus 로고    scopus 로고
    • Life at depth: Photobacterium profundum genome sequence and expression analysis
    • Vezzi, A., Campanaro, S., D'Angelo, M., Simonato, F., Vitulo, N., Lauro, F.M., etal. (2005) Life at depth: Photobacterium profundum genome sequence and expression analysis. Science 307: 1459-1461.
    • (2005) Science , vol.307 , pp. 1459-1461
    • Vezzi, A.1    Campanaro, S.2    D'Angelo, M.3    Simonato, F.4    Vitulo, N.5    Lauro, F.M.6
  • 50
    • 44849097921 scopus 로고    scopus 로고
    • Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3
    • Wang, F.P., Wang, J.B., Jian, H.H., Zhang, B., Li, S.K., Wang, F., etal. (2008) Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3. PLoS ONE 3: e1937.
    • (2008) PLoS ONE , vol.3
    • Wang, F.P.1    Wang, J.B.2    Jian, H.H.3    Zhang, B.4    Li, S.K.5    Wang, F.6
  • 51
    • 66249145772 scopus 로고    scopus 로고
    • Statistical methods for detecting differentially abundant features in clinical Metagenomic samples
    • White, J.R., Nagarajan, N., and Pop, M. (2009) Statistical methods for detecting differentially abundant features in clinical Metagenomic samples. PloS Comput Biol 5: e1000352.
    • (2009) PloS Comput Biol , vol.5
    • White, J.R.1    Nagarajan, N.2    Pop, M.3
  • 52
    • 33746287146 scopus 로고    scopus 로고
    • In-depth analyses of marine microbial community genomics
    • Worden, A.Z., Cuvelier, M.L., and Bartlett, D.H. (2006) In-depth analyses of marine microbial community genomics. Trends Microbiol 14: 331-336.
    • (2006) Trends Microbiol , vol.14 , pp. 331-336
    • Worden, A.Z.1    Cuvelier, M.L.2    Bartlett, D.H.3
  • 53
    • 0030988067 scopus 로고    scopus 로고
    • A novel delta-subdivision proteobacterial lineage from the lower ocean surface layer
    • Wright, T.D., Vergin, K.L., Boyd, P.W., and Giovannoni, S.J. (1997) A novel delta-subdivision proteobacterial lineage from the lower ocean surface layer. Appl Environ Microbiol 63: 1441-1448.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 1441-1448
    • Wright, T.D.1    Vergin, K.L.2    Boyd, P.W.3    Giovannoni, S.J.4


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