Transmission of Fruit Quality Traits in Apricot (Prunus armeniaca L.) and Analysis of Linked Quantitative Trait Loci (QTLs) Using Simple Sequence Repeat (SSR) Markers

Plant Molecular Biology Reporter

Volumn 31, Issue 6, 2013, Pages 1506-1517

  Salazar, Juan Alfonso ^a   Ruiz, David ^a   Egea, José ^a   Martínez Gómez, Pedro ^a  

^a RESEARCH GROUP ON QUALITY   (Spain)

Author keywords

Apricot; Correlations; Fruit quality; Inheritance; Marker assisted selection; Microsatellites; QTL

Indexed keywords

EID: 84887949829     PISSN: 07359640     EISSN: 15729818     Source Type: Journal    
DOI: 10.1007/s11105-013-0625-9     Document Type: Article

References (59)

1. Abbott AG (2012) Retrospect and prospects. In: Kole C, Abbott AG (eds) Genetics, genomics and breeding of stone fruits. CRC, New York, pp 378-402.
2. Abbott AG, Rajapakse S, Sosinski B, Lu ZX, Sossey-Alaoui K, Gannavarapu M, Reighard G, Ballard RE, Baird WV, Callahan A (1998) Construction of saturated linkage maps of peach crosses segregating for characters controlling fruit quality, tree architecture and pest resistance. Acta Hortic 465: 41-49.
3. Arora R, Rowland LJ, Tanino K (2003) Induction and release of bud dormancy in woody perennials: a science comes of age. HortSci 38: 911-921.
4. Asma BM, Ozturk K (2005) Analysis of morphological, pomological and yield characteristics of some apricot germplasm in Turkey. Genet Res Crop Evol 52: 305-313.
5. Badenes ML, Martínez-Calvo J, Llácer G (1998) Analysis of apricot germplasm from the European ecogeographical group. Euphytica 102: 93-99.
6. Bailey CH, Hough LF (1975) Apricots. In: Janick J, Moore JN (eds) Advances in fruit breeding. Purdue University Press, West Lafayette, pp 367-383.
7. Bassi D, Selli R (1990) Evaluation of fruit quality in peach and apricot. Adv Hortic Sci 4: 107-112.
8. Boopathi NM (2013) Genetic mapping and marker assisted selection: Basics, practice and benefits. Springer, New York, 293 pp.
9. Brown GS, Walker TD (1990) Indicators of maturity in apricots using biplot multivariate analysis. J Sci Food Agric 53: 321-331.
10. Campoy JA, Martínez-Gómez P, Ruiz D, Rees J, Celton JM (2010) Developing microsatellite multiplex and megaplex PCR systems for high throughput characterization of breeding progenies and linkage maps spanning the apricot genome. Plant Mol Biol Rep 28: 560-568.
11. Campoy JA, Ruiz D, Egea J, Rees J, Celton JM, Martínez-Gómez P (2011) Inheritance of flowering time in apricot (Prunus armeniaca L.) and analysis of linked quantitative trait loci (QTLs) using simple sequence repeat (SSR) markers. Plant Mol Biol Rep 29: 404-410.
12. Cantín CM, Crisosto CH, Ogundiwin EA, Gradziel T, Torrents J, Moreno MA, Gogorcena Y (2010) Chilling injury susceptibility in an intra-specific peach [Prunus persica (L.) Batsch] progeny. Postharvest Biol Technol 58: 79-87.
13. Cipriani G, Lot G, Huang HG, Marrazzo MT, Peterlunger E, Testolin R (1999) AC/GT and AG/CT microsatellite repeats in peach (Prunus persica (L) Basch): isolation, characterization and cross-species amplification in Prunus. Theor Appl Genet 99: 65-72.
14. Collard BCY, Jahufer MZZ, Brouwer JB, Pang ECK (2005) An introduction to markers, quantitative trait loci (QTL) mapping and marker assisted selection for crop improvement. The basic concepts Euphytica 142: 169-196.
15. Couranjou J (1995) Genetic studies of 11 quantitative characters in apricot. Sci Hortic 61: 61-75.
16. Dirlewanger E, Moing A, Rothan C, Svanella L, Pronier V, Guye A, Plomion C, Monet R (1999) Mapping QTL controlling fruit quality in peach (Prunus persica (L) Batsch). Theor Appl Genet 98: 18-31.
17. Dirlewanger E, Crosson A, Tavaud P, Aranzana MJ, Poizat C, Zanetto A, Arús P, Laigret L (2002) Development of microsatellite markers in peach and their use in genetic diversity analysis in peach and sweet cherry. Theor Appl Genet 105: 127-138.
18. Dirlewanger E, Graziano E, Joobeur T, Garriga-Caldré F, Cosson P, Howad W, Arús P (2004) Comparative mapping and marker-assisted selection in Rosaceae fruit crops. Proc Natl Acad Sci USA 101: 9891-9896.
19. Doyle JJ, Doyle JL (1987) A rapid isolation procedure for small quantities of fresh leaf tissue. Phytoch Bull 19: 11-15.
20. Drogoudi PD, Vemmos S, Pantelidis G, Petri E, Tzoutzoukou C, Karayiannis I (2008) Physical characters and antioxidant, sugar, and mineral nutrient contents in fruit from 29 apricot (Prunus armeniaca L.) cultivars and hybrids. J Agric Food Chem 56: 10754-10760.
21. Eduardo I, Pacheco I, Chietera G, Bassi D, Pozzi C, Vecchietti A, Rossini L (2011) QTL analysis of fruit quality traits in two peach intraspecific populations and importance of maturity date pleiotropic effect. Tree Genet Gen 7: 323-335.
22. Etienne C, Rothan C, Moing A, Plomion C, Bodnes C, Svanella-Dumas L, Cosson P, Pronier V, Monet R, Dirlewanger E (2002) Candidate gene and QTLs for sugar and organic acid content in peach. Theor Appl Genet 105: 145-159.
23. Fan S, Bielenberg DG, Zhebentyayeva TN, Reighard GL, Okie WR, Holland D, Abbott AG (2010) Mapping quantitative trait loci associated with chilling requirement, heat requirement and bloom date in peach (Prunus persica). New Phytol 185: 917-930.
24. Gurrieri F, Audergon JM, Albagnac G, Reich M (2001) Soluble sugars and carboxylic acids in ripe apricot fruit as parameters for distinguishing different cultivars. Euphytica 117: 183-189.
25. Hagen LS, Chaib J, Fad B, Decrocq V, Bouchet P, Lambert P, Audergon JM (2004) Genomic and cDNA microsatellite from apricot (Prunus armeniaca L). Mol Ecol Notes 4: 432-434.
26. Hough LF, Bailey CH (1982) 30 Years of apricot breeding in New Jersey. Acta Hortic 121: 207-210.
27. Illa I, Eduardo I, Audergon JM, Barale F, Dirlewanger E, Li X, Moing A, Lambert P, Le Dantec L, Gao Z, Poëssel JL, Pozzi C, Rossini L, Vecchietti A, Arús P, Howad W (2011) Saturating the Prunus (stone fruits) genome with candidate genes for fruit quality. Mol Breed 28: 667-682.
28. Infante R, Martínez-Gómez P, Predieri S (2011) Breeding for fruit quality in Prunus. In: Jenks MA, Bebeli PJ (eds) Breeding for fruit quality. Wiley & Blackwell, New York, pp 201-229.
29. Jung S, Jiwan D, Cho I, Abbott A, Tomkins J, Main D (2009) Synteny of Prunus and other model plant species. BMC Genomics 10: 76.
30. Krska B, Pramukova J, Vachun M (2009) Inheritance of some pomological traits in minaret × betinka apricot progeny. Hortic Sci 36: 85-91.
31. Ledbetter CA, Gómez E, Burgos L, Peterson S (1996) Evaluation of fruit quality of apricot cultivars and selections. J Tree Fruit Prod 1: 73-86.
32. Madesis P, Ganopoulos I, Tsaftaris A (2013) Microsatellite: evolution and contribution. Method Mol Biol 1006: 1-16.
33. Martínez-García PJ, Parfitt DE, Ogundiwin EA, Fass J, Chan HM, Ahmad R, Lurie S, Dandekar A, Gradziel TM, Crisosto CH (2013) High density SNP mapping and QTL analysis for fruit quality characteristics in peach (P. persica). Tree Genet Gen 9: 19-36.
34. Martínez-Gómez P, Crisosto C, Bonghi C, Rubio M (2011) New approaches to Prunus transcriptome analysis. Genetica 139: 755-769.
35. Messina R, Lain O, Marrazo T, Cipriano G, Testolin R (2004) New set of microsatellite loci isolated in apricot. Mol Ecol Notes 4: 432-434.
36. Peace C, Bassil N, Main D, Ficklin S, Rosyara UR, Stegmeir T, Sebolt A, Gilmore B, Mockler TC, Bryant DW, Whilelm L, Iezzoni A (2012) Development and evaluation of a genome-wide 6K SNP array for diploid sweet cherry and tetraploid sour cherry. PLoS ONE 7: e48305.
37. Quarta R, Dettori MT, Sartori A, Verde I (2000) Genetic linkage map and QTL analysis in peach. Acta Hortic 521: 233-241.
38. Quilot B, Wu BH, Kervella J, Génard M, Foulongne M, Moreau K (2004) QTL analysis of quality traits in an advanced backcross between Prunus persica cultivars and the wild relative species P. davidiana. Theor Appl Genet 109: 884-897.
39. Ruiz D, Egea J (2008) Phenotypic diversity and relationships of fruit quality traits in apricot (Prunus armeniaca L.) germplasm. Euphytica 163: 143-158.
40. Ruiz D, Lambert P, Audergon JM, Dondini L, Tartarini S, Adami M, Gennari F, Cervellati C, De Franceschi P, Sansavini S, Bureau S, Gouble B, Reich M, Renard CMGC, Bassi D, Testolin R (2010) Identification of QTLs for fruit quality traits in apricot. Acta Hortic 862: 587-592.
41. Ruiz D, Salazar JA, Nortes MD, Martínez-Gómez P, Egea J, Audergon JM, Clauzel G, Blanc A, Lambert P, Bureau S, Gouble B, Reich M, Reling P, Renard CMGC, Dondini L, Tartarini S (2012) Inheritance of fruit quality traits in apricot progenies. Acta Hortic 966: 93-99.
42. Sánchez-Pérez R, Ballester J, Dicenta F, Arús P, Martínez-Gómez P (2006) Comparison of SSR polymorphisms using automated capillary sequencers, and polyacrylamide and agarose gel electrophoresis: implications for the assessment of genetic diversity and relatedness in almond. Sci Hortic 108: 310-316.
43. Sánchez-Pérez R, Howad D, Dicenta F, Arús P, Martínez-Gómez P (2007) Mapping major genes and quantitative trait loci controlling agronomic traits in almond. Plant Breed 126: 310-318.
44. Sánchez-Pérez R, Dicenta F, Martínez-Gómez P (2012) Inheritance of chilling and heat requirements for flowering in almond and QTL analysis. Tree Genet Gen 8: 379-389.
45. Shulaev V, Korban SS, Sosinski B, Abbott AG, Aldwinckle HS, Folta KM, Iezzoni A, Main D, Arús P, Dandekar AM, Lewers K, Gardiner SE, Potter D, Veilleux E (2008) Multiple models for Rosaceae genomics. Plant Physiol 147: 985-1003.
46. Sims ET, Comin D (1963) Evaluation of objective maturity indices for Halehaven peaches. Proc Am Soc Hortic Sci 82: 125-130.
47. Socquet-Juglard D, Christen D, Devènes G, Gessler C, Duffy B, Patocchi A (2013) Mapping architectural, phenological, and fruit quality QTLs in apricot. Plant Mol Biol Rep 31: 387-397.
48. Sooriyapathirana SS, Khan A, Sebolt AM, Wang D, Bushakra JM, Wang KL, Allan AC, Gardiner SE, Chagné D, Iezzoni AF (2010) QTL analysis and candidate gene mapping for skin and flesh color in sweet cherry fruit (Prunus avium L.). Tree Genet Gen 6: 821-832.
49. Sosinski B, Gannavarapu M, Hager LE, Beck LE, King GJ, Ryder CD, Rajapakse S, Baird WV, Ballard RE, Abbott AG (2000) Characterization of microsatellite markers in peach (Prunus persica (L) Basch). Theor Appl Genet 101: 421-428.
50. Souty M, Audergon JM, Chambroy Y (1990) Abricot: Les critères de qualité. Arboric Fruit 430: 16-24.
51. Testolin R, Marrazo T, Cipriani G, Quarta R, Verde I, Dettori T, Pancaldi M, Sansavini S (2000) Microsatellite DNA in peach (Prunus persica L. Batsch) and it use in fingerprinting and testing the genetic origin of cultivars. Genome 43: 512-520.
52. Tricon D, Bourguiba H, Ruiz D, Bureau S, Gouble B, Grotte M, Blanc A, Audergon JM, Riech M, Renard C, Clauzel G, Brand R, Semon S (2009) Evolution of apricot fruit quality attributes in the new released cultivars. Acta Hortic 814: 571-576.
53. van Ooijen JW (2006) JoinMap 4, Software for the calculation of genetic linkage maps in experimental populations. Kyazma, Wageningen.
54. Verde I, Quarta R, Cerdrola C, Dettori MT (2002) QTL analysis of agronomic traits in a BC1 peach population. Acta Hortic 592: 291-297.
55. Verde I, Bassil N, Scalabrin S, Gilmore B, Lawley CT, Gasic K, Micheleti D, Rosyara UR, Cattonaro F, Vendramin E, Main D, Aramini V, Blas AL, Mockler TC, Bryant DW, Whilelm L, Troggio M, Sosinski B, Aranzana MJ, Arús P, Iezzoni A, Morgante N, Peace C (2012) Development and evaluation of a 9K SNP array for peach by internationally coordinated SNP detection and validation in breeding germplasm. PLoS ONE 7: e35668.
56. Voorrips RE (2002) MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered 93: 77-78.
57. Wang D, Karle R, Iezzoni AF (2000) QTL analysis of flower and fruit traits in sour cherry. Theor Appl Genet 100: 535-544.
58. Würschum T (2012) Mapping QTL for agronomic traits in breeding populations. Theor Apple Genet 125: 201-210.
59. Yamamoto T, Shimada T, Imai T, Yaegaki H, Haji T, Matsuta N, Yamaguchi M, Hayashi T (2001) Characterization of morphological traits based on a genetic linkage map in peach. Breed Sci 51: 271-278.