Development of microsatellite markers in peach [Prunus persica (L.) Batsch] and their use in genetic diversity analysis in peach and sweet cherry (Prunus avium L.)

Theoretical and Applied Genetics

Volumn 105, Issue 1, 2002, Pages 127-138

  Dirlewanger, E ^a   Cosson, P ^a   Tavaud, M ^a   Aranzana, M J ^b   Poizat, C ^a   Zanetto, A ^a   Arus P ^b   Laigret, F ^a  

^a CEMAGREF   (France)

^b IRTA   (Spain)

Author keywords

Cherry; Fingerprinting; Genetic diversity; Microsatellites; Peach; Prunus; Rosaceae; SSR; Synteny

Indexed keywords

BIODIVERSITY; CLONING; PLANTS (BOTANY); PROTEINS;

MICROSATELLITE MARKERS;

GENETIC ENGINEERING;

ARMENIACA; CASTANEA; EMBRYOPHYTA; FRAGARIA; FRAGARIA X ANANASSA; JUGLANS; MALUS X DOMESTICA; PRUNUS; PRUNUS ARMENIACA; PRUNUS AVIUM; PRUNUS CERASIFERA; PRUNUS CERASUS; PRUNUS DOMESTICA; PRUNUS DULCIS; PRUNUS PERSICA; ROSACEAE; TERMINALIA CATAPPA; VITIS;

EID: 0036927474     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-002-0867-7     Document Type: Article

References (33)

1. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
2. Aranzana MJ, Garcia-Mas J, Carbo J, Arùs P (2002) Development and variation analysis of microsatellite markers in peach. Plant Breeding 121:87-92
3. Arumuganathan K, Earle E (1991) Nuclear DNA content of some important plant species. Plant Mol Biol Rep 9:208-218
4. Arús P, Messeguer R, Viruel M, Tobutt K, Dirlewanger E, Santi F, Quarta R, Ritter E (1994) The european Prunus mapping project. Euphytica 77:97-100
5. Billote N, Lagoda PJL, Risterucci AM, Baurens FC (1999) Microsatellite-enriched libraries: Applied methodology for the development of SSR markers in tropical crops. Fruits 54:277-288
6. Byrne DH (1990) Isozyme variability in four diploid stone fruits compared with other woody perennial plants. J Hered 81:68-71
7. Cipriani G, Lot G, Huang W-G, Marrazzo MT, Peterlunger E, Testolin R (1999) AC/GT and AG/CT microsatellite repeats in peach [Prunus persica (L) Batsch]: Isolation, characterization and cross-species amplification in Prunus. Theor Appl Genet 99:65-72
8. Cho YG, Panaud O, McCouch S (1996) Cloning and mapping of variety-specific rice genomic DNA sequences: Amplified fragment length polymorphism (AFLP) from silver-stained polyacrylamide gels. Genome 32:203-207
9. Coen ES, Meyerowitz EM (1991) The war of the whorls: Genetic interactions controlling flower development. Nature 353:31-37
10. Dirlewanger E, Duha S, Viruel MA, Saunier R (1998a) Identification of peach varieties using molecular markers. Acta Hort 465:69-77
11. Dirlewanger E, Pronier V, Parvery C, Rothan C, Guy A, Monet R (1998b) Genetic linkage map of peach. Theor Appl Genet 97:888-895
12. Granger AR, Clarke GR, Jackson JF (1993) Sweet cherry cultivar identification by leaf isozyme polymorphism. Theor Appl Genet 86:458-464
13. Guilford P, Prakash S, Zhu JM, Rikkerink E, Gardiner S, Bassett H, Forster R (1997) Microsatellites in Malus xdomestica (apple): Abundance, polymorphism and cultivar identification. Theor Appl Genet 94:249-254
14. Hesse CO (1975) Peaches. In: Janick J, Moore JN (eds) Advances in Fruit Breeding. Purdue University Press, West Lafayette, Indiana, USA, pp 285-335
15. Huang W-G, Cipriani G, Morgante M, Testolin R (1998) Microsatellites DNA in Actinidia chinensis: Isolation, characterisation, and homology in related species. Theor Appl Genet 97:1269-1278
16. 2 progeny. Theor Appl Genet 97:1034-1041
17. Kloosterman AD, Budowle B, Daselaar P (1993) PCR-amplification and detection of the human D1S80 VNTR locus. Amplification conditions, population genetics and application in forensic analysis. Int J Leg Med 105:257-264
18. Li CD, Rossnagel BG, Scoles GJ (2000) The development of oat microsatellite markers and their use in identifying relationships among Avena species and oat cultivars. Theor Appl Genet 101:1259-1268
19. Loridon K, Cournoyer B, Goubely C, Depeiges A, Picard G (1998) Length polymorphism and allele structure of trinucleotide microsatellites in natural accessions of Arabidopsis thaliana. Theor Appl Genet 97:591-604
20. Maliepaard C, Alston FH, van Arkel G, Brown LM, Chevreau E, Dunemann F, Evans KM, Gardiner S, Guilford P, van Heusden AW, J. Janse, Laurens F, Lynn JR, Manganaris AG, den Nijs APM, Periam N, Rikkerink E, Roche P, Ryder C, Sansavini S, Schmidt H, Tartarini S, Verhaegh JJ, Vrielink-van Ginkel M, King GJ (1998) Aligning male and female linkage maps of apple (Malus pumila Mill.) using multi-allelic markers. Theor Appl Genet 97:60-73
21. Peakall R, Gilmore S, Keys W, Morgante M, Rafalski A (1998) Cross-species amplification of soybean (Glycine max) simple-sequence-repeats (SSRs) within the genus and other legume genera. Mol Biol Evol 15:1275-1287
22. Rafalski JA, Vogel JM, Morgante M, Powell W, Andre C, Tingey SV (1996) Generating and using DNA markers in plants. In Birren B, Lai E (eds) Nonmammalian Genomic Analysis. A practical guide. Academic Press, San Diego, pp 75-134
23. Reynders S, Monet R (1987) Evolution, au cours du temps, de la consanguinitédes variétés de pêcher. Etude des distances génétiques entre quelques géniteurs. Fruits 42:529-535
24. Rogers JS (1972) Measures of genetic similarity and genetic distance. Studies in Genetics VII. Univ Texas Publ 7213:145-153
25. Rohlf FJ (1997) NTSY-PC: Numerical Taxonomy and Multivariate Analysis System. Exeter software, New York
26. Scorza R, Mehlenbacher SA, Lighner GW (1985) Inbreeding and coancestry of freestone peach cultivars of the eastern United States and implications for peach germplasm improvement. J Am Soc Hortic Sci 110:547-552
27. Smulders MJM, Bredemeijer G, Rus-Kortekaas W (1997) Use of short microsatellites from database sequences to generate polymorphisms among Lycopersicon esculentum cultivars and accessions of other Lycopersicon species. Theor Appl Genet 97:264-272
28. Shore P, Sharrocks AD (1995) The MADS-box family of transcription factors. Eur J Biochem 229:1-13
29. Sun GL, Salomon B, Bothmer RV (1998) Characterization and analysis of microsatellite loci in Elymus caninus (Tricicea: Poaceae). Theor Appl Genet 96:676-682
30. Sosinski B, Gannavarapu M, Hager LD, Beck LE, King GJ, Ryder CD, Rajapakse S, Baird WV, Ballard RE, Abbott AG (2000) Characterization of microsatellite markers in peach [Prunus persica (L.) Batsch]. Theor Appl Genet 97:1034-1041
31. Testolin R, Marrazzo T, Cipriani G, Quarta R, Verde I, Dettori MT, Pancaldi M, Sansavini S (2000) Microsatellite DNA in peach (Prunus persica L. Batch) and its use in fingerprinting and testing the genetic origin of cultivars. Genome 43:512-520
32. Weising K, Fung RWM, Keeling DJ, Atkinson RG, Gardner R (1996) Characterisation of microsatellites from Actinidia chinensis. Mol Breed 2:117-131
33. Yao J-L, Dong Y-H, Kvarnheden A, Morris B (1999) Seven MADS-box genes in apple are expressed in different part of the fruit. J Am Soc Hort Sci 124:8-13