-
1
-
-
60549087903
-
Phage evolution and ecology
-
Abedon ST (2009) Phage evolution and ecology. Adv Appl Microbiol 67:1-45
-
(2009)
Adv Appl Microbiol
, vol.67
, pp. 1-45
-
-
Abedon, S.T.1
-
2
-
-
84864596942
-
Is the genetic landscape of the deep subsurface biosphere affected by viruses?
-
Anderson RE, Brazelton WJ et al (2011a) Is the genetic landscape of the deep subsurface biosphere affected by viruses? Front Microbiol 2:219
-
(2011)
Front Microbiol
, vol.2
, pp. 219
-
-
Anderson, R.E.1
Brazelton, W.J.2
-
3
-
-
79960468271
-
Using CRISPRs as a metagenomic tool to identify microbial hosts of a diffuse flow hydrothermal vent viral assemblage
-
Anderson RE, Brazelton WJ et al. (2011b) Using CRISPRs as a metagenomic tool to identify microbial hosts of a diffuse flow hydrothermal vent viral assemblage. FEMS Microbiol Ecol 77(1):120-133
-
(2011)
FEMS Microbiol Ecol
, vol.77
, Issue.1
, pp. 120-133
-
-
Anderson, R.E.1
Brazelton, W.J.2
-
4
-
-
44449133775
-
Virus population dynamics and acquired virus resistance in natural microbial communities
-
Andersson AF, Banfield JF (2008) Virus population dynamics and acquired virus resistance in natural microbial communities. Science 320(5879):1047-1050
-
(2008)
Science
, vol.320
, Issue.5879
, pp. 1047-1050
-
-
Andersson, A.F.1
Banfield, J.F.2
-
5
-
-
74549198200
-
The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes
-
Angly FE, Willner D et al (2009) The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes. PLoS Comput Biol 5(12):e1000593
-
(2009)
Plos Comput Biol
, vol.5
, Issue.12
-
-
Angly, F.E.1
Willner, D.2
-
6
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
Barrangou R, Fremaux C et al (2007) CRISPR provides acquired resistance against viruses in prokaryotes. Science 315(5819):1709-1712
-
(2007)
Science
, vol.315
, Issue.5819
, pp. 1709-1712
-
-
Barrangou, R.1
Fremaux, C.2
-
7
-
-
84855271565
-
Phage-bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome
-
Berg Miller ME, Yeoman CJ et al. (2012) Phage-bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome. Environ Microbiol 14:207-227
-
(2012)
Environ Microbiol
, vol.14
, pp. 207-227
-
-
Berg Miller, M.E.1
Yeoman, C.J.2
-
8
-
-
80755187812
-
CRISPR-Cas systems in bacteria and archaea: Versatile small RNAs for adaptive defense and regulation
-
Bhaya D, Davison M et al (2011) CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulation. Annu Rev Genet 45:273-297
-
(2011)
Annu Rev Genet
, vol.45
, pp. 273-297
-
-
Bhaya, D.1
Davison, M.2
-
9
-
-
36849028589
-
Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses
-
Bhaya D, Grossman AR et al (2007) Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses. ISME J 1(8):703-713
-
(2007)
ISME J
, vol.1
, Issue.8
, pp. 703-713
-
-
Bhaya, D.1
Grossman, A.R.2
-
10
-
-
84857041376
-
Innate and adaptive immunity in bacteria: Mechanisms of programmed genetic variation to fight bacteriophages
-
Bikard D, Marraffini LA (2012) Innate and adaptive immunity in bacteria: mechanisms of programmed genetic variation to fight bacteriophages. Curr Opin Immunol 24:15-20
-
(2012)
Curr Opin Immunol
, vol.24
, pp. 15-20
-
-
Bikard, D.1
Marraffini, L.A.2
-
11
-
-
79952050667
-
Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis
-
Blainey PC, Mosier AC et al (2011) Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis. PLoS One 6(2):e16626
-
(2011)
Plos One
, vol.6
, Issue.2
, pp. 16626
-
-
Blainey, P.C.1
Mosier, A.C.2
-
12
-
-
20344382957
-
Here a virus, there a virus, everywhere the same virus?
-
Breitbart M, Rohwer F (2005) Here a virus, there a virus, everywhere the same virus? Trends Microbiol 13(6):278-284
-
(2005)
Trends Microbiol
, vol.13
, Issue.6
, pp. 278-284
-
-
Breitbart, M.1
Rohwer, F.2
-
13
-
-
1642299836
-
Phage community dynamics in hot springs
-
Breitbart M, Wegley L et al (2004) Phage community dynamics in hot springs. Appl Environ Microbiol 70(3):1633-1640
-
(2004)
Appl Environ Microbiol
, vol.70
, Issue.3
, pp. 1633-1640
-
-
Breitbart, M.1
Wegley, L.2
-
14
-
-
49649114086
-
Small CRISPR RNAs guide antiviral defense in prokaryotes
-
Brouns SJ, Jore MM et al (2008) Small CRISPR RNAs guide antiviral defense in prokaryotes. Science 321(5891):960-964
-
(2008)
Science
, vol.321
, Issue.5891
, pp. 960-964
-
-
Brouns, S.J.1
Jore, M.M.2
-
15
-
-
79951505084
-
Prevalence, conservation and functional analysis of Yersinia and Escherichia CRISPR regions in clinical pseudomonas aeruginosa isolates
-
Cady KC, White AS et al (2011) Prevalence, conservation and functional analysis of Yersinia and Escherichia CRISPR regions in clinical pseudomonas aeruginosa isolates. Microbiology 157(Pt 2):430-437
-
(2011)
Microbiology
, vol.157
, pp. 430-437
-
-
Cady, K.C.1
White, A.S.2
-
16
-
-
77954423847
-
Comparative network clustering of direct repeats (DRs) and cas genes confirms the possibility of the horizontal transfer of CRISPR locus among bacteria
-
Chakraborty S, Snijders AP et al (2010) Comparative network clustering of direct repeats (DRs) and cas genes confirms the possibility of the horizontal transfer of CRISPR locus among bacteria. Mol Phylogenet Evol 56(3):878-887
-
(2010)
Mol Phylogenet Evol
, vol.56
, Issue.3
, pp. 878-887
-
-
Chakraborty, S.1
Snijders, A.P.2
-
17
-
-
84863491748
-
Multi-scale model of CRISPR-induced coevolutionary dynamics: Diversification at the interface of Lamarck and Darwin
-
Childs LM, Held NL et al. (2012) Multi-scale model of CRISPR-induced coevolutionary dynamics: diversification at the interface of Lamarck and Darwin. Evolution 66(7):2015-2029
-
(2012)
Evolution
, vol.66
, Issue.7
, pp. 2015-2029
-
-
Childs, L.M.1
Held, N.L.2
-
18
-
-
50349083723
-
Insight into microevolution of Yersinia pestis by clustered regularly interspaced short palindromic repeats
-
Cui Y, Li Y et al (2008) Insight into microevolution of Yersinia pestis by clustered regularly interspaced short palindromic repeats. PLoS One 3(7):e2652
-
(2008)
Plos One
, vol.3
, Issue.7
-
-
Cui, Y.1
Li, Y.2
-
20
-
-
84859192030
-
Ultrafast evolution and loss of CRISPRs following a host shift in a novel wildlife pathogen, Mycoplasma gallisepticum
-
Delaney NF, Balenger S et al (2012) Ultrafast evolution and loss of CRISPRs following a host shift in a novel wildlife pathogen, Mycoplasma gallisepticum. PLoS Genet 8(2):e1002511
-
(2012)
Plos Genet
, vol.8
, Issue.2
-
-
Delaney, N.F.1
Balenger, S.2
-
21
-
-
38949123143
-
Phage response to CRISPR-encoded resistance in Streptococcus thermophilus
-
Deveau H, Barrangou R et al (2008) Phage response to CRISPR-encoded resistance in Streptococcus thermophilus. J Bacteriol 190(4):1390-1400
-
(2008)
J Bacteriol
, vol.190
, Issue.4
, pp. 1390-1400
-
-
Deveau, H.1
Barrangou, R.2
-
22
-
-
77957935381
-
CRISPR/Cas system and its role in phage-bacteria interactions
-
Deveau H, Garneau JE et al (2010) CRISPR/Cas system and its role in phage-bacteria interactions. Annu Rev Microbiol 64:475-493
-
(2010)
Annu Rev Microbiol
, vol.64
, pp. 475-493
-
-
Deveau, H.1
Garneau, J.E.2
-
23
-
-
77952398183
-
Diversity of CRISPR loci in Escherichia coli
-
Diez-Villasenor C, Almendros C et al (2010) Diversity of CRISPR loci in Escherichia coli. Microbiology 156(Pt 5):1351-1361
-
(2010)
Microbiology
, vol.156
, pp. 1351-1361
-
-
Diez-Villasenor, C.1
Almendros, C.2
-
24
-
-
41649109613
-
Functional metagenomic profiling of nine biomes
-
Dinsdale EA, Edwards RA et al (2008) Functional metagenomic profiling of nine biomes. Nature 452(7187):629-632
-
(2008)
Nature
, vol.452
, Issue.7187
, pp. 629-632
-
-
Dinsdale, E.A.1
Edwards, R.A.2
-
25
-
-
78649342032
-
The Escherichia coli CRISPR system protects from lambda lysogenization, lysogens, and prophage induction
-
Edgar R, Qimron U (2010) The Escherichia coli CRISPR system protects from lambda lysogenization, lysogens, and prophage induction. J Bacteriol 192(23):6291-6294
-
(2010)
J Bacteriol
, vol.192
, Issue.23
, pp. 6291-6294
-
-
Edgar, R.1
Qimron, U.2
-
26
-
-
51649093471
-
Understanding the limits to generalizability of experimental evolutionary models
-
Forde SE, Beardmore RE et al (2008) Understanding the limits to generalizability of experimental evolutionary models. Nature 455(7210):220-223
-
(2008)
Nature
, vol.455
, Issue.7210
, pp. 220-223
-
-
Forde, S.E.1
Beardmore, R.E.2
-
27
-
-
79960418330
-
Comparative genomics of 28 Salmonella enterica isolates: Evidence for CRISPR-mediated adaptive sublineage evolution
-
Fricke WF, Mammel MK et al (2011) Comparative genomics of 28 Salmonella enterica isolates: evidence for CRISPR-mediated adaptive sublineage evolution. J Bacteriol 193(14):3556-3568
-
(2011)
J Bacteriol
, vol.193
, Issue.14
, pp. 3556-3568
-
-
Fricke, W.F.1
Mammel, M.K.2
-
28
-
-
84859149175
-
Reconstructing viral genomes from the environment using fosmid clones: The case of haloviruses
-
Garcia-Heredia I, Martin-Cuadrado AB et al (2012) Reconstructing viral genomes from the environment using fosmid clones: the case of haloviruses. PLoS One 7(3):e33802
-
(2012)
Plos One
, vol.7
, Issue.3
, pp. 33802
-
-
Garcia-Heredia, I.1
Martin-Cuadrado, A.B.2
-
29
-
-
78149261827
-
The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA
-
Garneau JE, Dupuis ME et al (2010) The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA. Nature 468(7320):67-71
-
(2010)
Nature
, vol.468
, Issue.7320
, pp. 67-71
-
-
Garneau, J.E.1
Dupuis, M.E.2
-
30
-
-
79953007909
-
Microbial metagenomics: Beyond the genome
-
Gilbert JA, Dupont CL (2011) Microbial metagenomics: beyond the genome. Ann Rev Mar Sci 3(1):347-371
-
(2011)
Ann Rev Mar Sci
, vol.3
, Issue.1
, pp. 347-371
-
-
Gilbert, J.A.1
Dupont, C.L.2
-
31
-
-
33744941078
-
The repetitive DNA elements called CRISPRs and their associated genes: Evidence of horizontal transfer among prokaryotes
-
Godde JS, Bickerton A (2006) The repetitive DNA elements called CRISPRs and their associated genes: evidence of horizontal transfer among prokaryotes. J Mol Evol 62(6):718-729
-
(2006)
J Mol Evol
, vol.62
, Issue.6
, pp. 718-729
-
-
Godde, J.S.1
Bickerton, A.2
-
32
-
-
41349115471
-
On-line resources for bacterial micro-evolution studies using MLVA or CRISPR typing
-
Grissa I, Bouchon P et al (2008) On-line resources for bacterial micro-evolution studies using MLVA or CRISPR typing. Biochimie 90(4):660-668
-
(2008)
Biochimie
, vol.90
, Issue.4
, pp. 660-668
-
-
Grissa, I.1
Bouchon, P.2
-
33
-
-
34547579396
-
CRISPRFinder: A web tool to identify clustered regularly interspaced short palindromic repeats
-
Grissa I, Vergnaud G et al. (2007) CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats. Nucleic Acids Res 35(Web Server issue): W52-57
-
(2007)
Nucleic Acids Res
, vol.35
, Issue.Web Server issue
, pp. W52-W57
-
-
Grissa, I.1
Vergnaud, G.2
-
34
-
-
84865798438
-
Spatial Structure and lamarckian adaptation explain extreme genetic diversity at CRISPR locus
-
Haerter JO, Sneppen K (2012) Spatial Structure and lamarckian adaptation explain extreme genetic diversity at CRISPR locus. MBio 3(4):e00126-e00212
-
(2012)
Mbio
, vol.3
, Issue.4
, pp. 00126-e00212
-
-
Haerter, J.O.1
Sneppen, K.2
-
35
-
-
80054971915
-
Targeted bacterial immunity buffers phage diversity
-
Haerter JO, Trusina A et al (2011) Targeted bacterial immunity buffers phage diversity. J Virol 85(20):10554-10560
-
(2011)
J Virol
, vol.85
, Issue.20
, pp. 10554-10560
-
-
Haerter, J.O.1
Trusina, A.2
-
36
-
-
34248400310
-
A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
-
Haft DH, Selengut J et al (2005) A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput Biol 1(6):e60
-
(2005)
Plos Comput Biol
, vol.1
, Issue.6
, pp. 60
-
-
Haft, D.H.1
Selengut, J.2
-
37
-
-
70449753811
-
RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex
-
Hale CR, Zhao P et al (2009) RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex. Cell 139(5):945-956
-
(2009)
Cell
, vol.139
, Issue.5
, pp. 945-956
-
-
Hale, C.R.1
Zhao, P.2
-
38
-
-
22544460255
-
The viriosphere, diversity, and genetic exchange within phage communities
-
Hambly E, Suttle CA (2005) The viriosphere, diversity, and genetic exchange within phage communities. Curr Opin Microbiol 8(4):444-450
-
(2005)
Curr Opin Microbiol
, vol.8
, Issue.4
, pp. 444-450
-
-
Hambly, E.1
Suttle, C.A.2
-
39
-
-
77957124941
-
Heterogeneous diversity of spacers within CRISPR (Clustered regularly interspaced short palindromic repeats)
-
He J, Deem MW (2010) Heterogeneous diversity of spacers within CRISPR (clustered regularly interspaced short palindromic repeats). Phys Rev Lett 105(12):128102
-
(2010)
Phys Rev Lett
, vol.105
, Issue.12
-
-
He, J.1
Deem, M.W.2
-
40
-
-
58349087246
-
Germ warfare in a microbial mat community: CRISPRs provide insights into the co-evolution of host and viral genomes
-
Heidelberg JF, Nelson WC et al (2009) Germ warfare in a microbial mat community: CRISPRs provide insights into the co-evolution of host and viral genomes. PLoS One 4(1):e4169
-
(2009)
Plos One
, vol.4
, Issue.1
-
-
Heidelberg, J.F.1
Nelson, W.C.2
-
41
-
-
77958590947
-
CRISPR associated diversity within a population of Sulfolobus islandicus
-
Held NL, Herrera A et al (2010) CRISPR associated diversity within a population of Sulfolobus islandicus. PLoS One 5(9):e12988
-
(2010)
Plos One
, vol.5
, Issue.9
-
-
Held, N.L.1
Herrera, A.2
-
42
-
-
58549120798
-
Viral biogeography revealed by signatures in Sulfolobus islandicus genomes
-
Held NL, Whitaker RJ (2009) Viral biogeography revealed by signatures in Sulfolobus islandicus genomes. Environ Microbiol 11(2):457-466
-
(2009)
Environ Microbiol
, vol.11
, Issue.2
, pp. 457-466
-
-
Held, N.L.1
Whitaker, R.J.2
-
43
-
-
64449088715
-
Comparative analysis of CRISPR loci in lactic acid bacteria genomes
-
Horvath P, Coute-Monvoisin AC et al (2009) Comparative analysis of CRISPR loci in lactic acid bacteria genomes. Int J Food Microbiol 131(1):62-70
-
(2009)
Int J Food Microbiol
, vol.131
, Issue.1
, pp. 62-70
-
-
Horvath, P.1
Coute-Monvoisin, A.C.2
-
44
-
-
38949214103
-
Diversity, activity, and evolution of CRISPR loci in Streptococcus thermophilus
-
Horvath P, Romero DA et al (2008) Diversity, activity, and evolution of CRISPR loci in Streptococcus thermophilus. J Bacteriol 190(4):1401-1412
-
(2008)
J Bacteriol
, vol.190
, Issue.4
, pp. 1401-1412
-
-
Horvath, P.1
Romero, D.A.2
-
45
-
-
77950105950
-
Bacteriophage host range and bacterial resistance
-
Hyman P, Abedon ST (2010) Bacteriophage host range and bacterial resistance. Adv Appl Microbiol 70:217-248
-
(2010)
Adv Appl Microbiol
, vol.70
, pp. 217-248
-
-
Hyman, P.1
Abedon, S.T.2
-
46
-
-
0037062936
-
Local dispersal promotes biodiversity in a real-life game of rockpaper-scissors
-
Kerr B, Riley MA et al (2002) Local dispersal promotes biodiversity in a real-life game of rockpaper-scissors. Nature 418(6894):171-174
-
(2002)
Nature
, vol.418
, Issue.6894
, pp. 171-174
-
-
Kerr, B.1
Riley, M.A.2
-
47
-
-
84455173447
-
Genomics of bacterial and archaeal viruses: Dynamics within the prokaryotic virosphere
-
Krupovic M, Prangishvili D et al (2011) Genomics of bacterial and archaeal viruses: dynamics within the prokaryotic virosphere. Microbiol Mol Biol Rev 75(4):610-635
-
(2011)
Microbiol Mol Biol Rev
, vol.75
, Issue.4
, pp. 610-635
-
-
Krupovic, M.1
Prangishvili, D.2
-
48
-
-
39049150896
-
A bacterial metapopulation adapts locally to phage predation despite global dispersal
-
Kunin V, He S et al (2008) A bacterial metapopulation adapts locally to phage predation despite global dispersal. Genome Res 18(2):293-297
-
(2008)
Genome Res
, vol.18
, Issue.2
, pp. 293-297
-
-
Kunin, V.1
He, S.2
-
49
-
-
35748974534
-
Evolutionary conservation of sequence and secondary structures in CRISPR repeats
-
Kunin V, Sorek R et al (2007) Evolutionary conservation of sequence and secondary structures in CRISPR repeats. Genome Biol 8(4):R61
-
(2007)
Genome Biol
, vol.8
, Issue.4
, pp. R61
-
-
Kunin, V.1
Sorek, R.2
-
50
-
-
77951104433
-
Bacteriophage resistance mechanisms
-
Labrie SJ, Samson JE et al (2010) Bacteriophage resistance mechanisms. Nat Rev Microbiol 8(5):317-327
-
(2010)
Nat Rev Microbiol
, vol.8
, Issue.5
, pp. 317-327
-
-
Labrie, S.J.1
Samson, J.E.2
-
51
-
-
78449240715
-
Nasty viruses, costly plasmids, population dynamics, and the conditions for establishing and maintaining CRISPR-mediated adaptive immunity in bacteria
-
Levin BR (2010) Nasty viruses, costly plasmids, population dynamics, and the conditions for establishing and maintaining CRISPR-mediated adaptive immunity in bacteria. PLoS Genet 6(10):e1001171
-
(2010)
Plos Genet
, vol.6
, Issue.10
-
-
Levin, B.R.1
-
52
-
-
0000313246
-
Resource-limited growth, competition and predation: A model and experimental studies with bacteria and bacteriophage
-
Levin BR, Stewart FM et al (1977) Resource-limited growth, competition and predation: a model and experimental studies with bacteria and bacteriophage. Am Nat 111:3-24
-
(1977)
Am Nat
, vol.111
, pp. 3-24
-
-
Levin, B.R.1
Stewart, F.M.2
-
53
-
-
79953205601
-
Novel virulence gene and clustered regularly interspaced short palindromic repeat (CRISPR) multilocus sequence typing scheme for subtyping of the major serovars of Salmonella enterica subsp. Enterica
-
Liu F, Barrangou R et al (2011) Novel virulence gene and clustered regularly interspaced short palindromic repeat (CRISPR) multilocus sequence typing scheme for subtyping of the major serovars of Salmonella enterica subsp. enterica. Appl Environ Microbiol 77(6):1946-1956
-
(2011)
Appl Environ Microbiol
, vol.77
, Issue.6
, pp. 1946-1956
-
-
Liu, F.1
Barrangou, R.2
-
54
-
-
70449376998
-
High diversity of the viral community from an Antarctic lake
-
Lopez-Bueno A, Tamames J et al (2009) High diversity of the viral community from an Antarctic lake. Science 326(5954):858-861
-
(2009)
Science
, vol.326
, Issue.5954
, pp. 858-861
-
-
Lopez-Bueno, A.1
Tamames, J.2
-
55
-
-
79956157571
-
Evolution and classification of the CRISPR-Cas systems
-
Makarova KS, Haft DH et al (2011) Evolution and classification of the CRISPR-Cas systems. Nat Rev Microbiol 9(6):467-477
-
(2011)
Nat Rev Microbiol
, vol.9
, Issue.6
, pp. 467-477
-
-
Makarova, K.S.1
Haft, D.H.2
-
56
-
-
57849137502
-
CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA
-
Marraffini LA, Sontheimer EJ (2008) CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA. Science 322(5909):1843-1845
-
(2008)
Science
, vol.322
, Issue.5909
, pp. 1843-1845
-
-
Marraffini, L.A.1
Sontheimer, E.J.2
-
57
-
-
64049118040
-
Short motif sequences determine the targets of the prokaryotic CRISPR defence system
-
Mojica FJ, Diez-Villasenor C et al (2009) Short motif sequences determine the targets of the prokaryotic CRISPR defence system. Microbiology 155(Pt 3):733-740
-
(2009)
Microbiology
, vol.155
, pp. 733-740
-
-
Mojica, F.J.1
Diez-Villasenor, C.2
-
58
-
-
84857371051
-
Metagenomics and future perspectives in virus discovery
-
Mokili JL, Rohwer F et al (2012) Metagenomics and future perspectives in virus discovery. Curr Opin Virol 2(1):63-77
-
(2012)
Curr Opin Virol
, vol.2
, Issue.1
, pp. 63-77
-
-
Mokili, J.L.1
Rohwer, F.2
-
60
-
-
79955795335
-
CRISPR inhibition of prophage acquisition in Streptococcus pyogenes
-
Nozawa T, Furukawa N et al (2011) CRISPR inhibition of prophage acquisition in Streptococcus pyogenes. PLoS ONE 6(5):e19543
-
(2011)
Plos ONE
, vol.6
, Issue.5
-
-
Nozawa, T.1
Furukawa, N.2
-
61
-
-
51749122921
-
Metagenomics reveals our incomplete knowledge of global diversity
-
Pignatelli M, Aparicio G et al (2008) Metagenomics reveals our incomplete knowledge of global diversity. Bioinformatics 24(18):2124-2125
-
(2008)
Bioinformatics
, vol.24
, Issue.18
, pp. 2124-2125
-
-
Pignatelli, M.1
Aparicio, G.2
-
62
-
-
70350646816
-
CRISPR elements in the thermococcales: Evidence for associated horizontal gene transfer in Pyrococcus furiosus
-
Portillo MC, Gonzalez JM (2009) CRISPR elements in the thermococcales: evidence for associated horizontal gene transfer in Pyrococcus furiosus. J Appl Genet 50(4):421-430
-
(2009)
J Appl Genet
, vol.50
, Issue.4
, pp. 421-430
-
-
Portillo, M.C.1
Gonzalez, J.M.2
-
63
-
-
78651482834
-
Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time
-
Pride DT, Sun CL et al (2011) Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time. Genome Res 21(1):126-136
-
(2011)
Genome Res
, vol.21
, Issue.1
, pp. 126-136
-
-
Pride, D.T.1
Sun, C.L.2
-
64
-
-
77954627922
-
Viruses in the faecal microbiota of monozygotic twins and their mothers
-
Reyes A, Haynes M et al (2010) Viruses in the faecal microbiota of monozygotic twins and their mothers. Nature 466(7304):334-338
-
(2010)
Nature
, vol.466
, Issue.7304
, pp. 334-338
-
-
Reyes, A.1
Haynes, M.2
-
65
-
-
79958285933
-
Diversity, evolution, and functionality of clustered regularly interspaced short palindromic repeat (CRISPR) regions in the fire blight pathogen Erwinia amylovora
-
Rezzonico F, Smits Th et al (2011) Diversity, evolution, and functionality of clustered regularly interspaced short palindromic repeat (CRISPR) regions in the fire blight pathogen Erwinia amylovora. Appl Environ Microbiol 77(11):3819-3829
-
(2011)
Appl Environ Microbiol
, vol.77
, Issue.11
, pp. 3819-3829
-
-
Rezzonico, F.1
Smits, T.2
-
66
-
-
84864042533
-
Diverse CRISPRs evolving in human microbiomes
-
Rho M, Wu YW et al (2012) Diverse CRISPRs evolving in human microbiomes. PLoS Genet 8(6):e1002441
-
(2012)
Plos Genet
, vol.8
, Issue.6
-
-
Rho, M.1
Wu, Y.W.2
-
67
-
-
10944226351
-
Metagenomics: Genomic analysis of microbial communities
-
Riesenfeld CS, Schloss PD et al (2004) Metagenomics: genomic analysis of microbial communities. Annu Rev Genet 38(1):525-552
-
(2004)
Annu Rev Genet
, vol.38
, Issue.1
, pp. 525-552
-
-
Riesenfeld, C.S.1
Schloss, P.D.2
-
68
-
-
77952670727
-
Viral and microbial community dynamics in four aquatic environments
-
Rodriguez-Brito B, Li L et al (2010) Viral and microbial community dynamics in four aquatic environments. ISME J 4(6):739-751
-
(2010)
ISME J
, vol.4
, Issue.6
, pp. 739-751
-
-
Rodriguez-Brito, B.1
Li, L.2
-
69
-
-
70350180460
-
Explaining microbial population genomics through phage predation
-
Rodriguez-Valera F, Martin-Cuadrado AB et al (2009) Explaining microbial population genomics through phage predation. Nat Rev Microbiol 7(11):828-836
-
(2009)
Nat Rev Microbiol
, vol.7
, Issue.11
, pp. 828-836
-
-
Rodriguez-Valera, F.1
Martin-Cuadrado, A.B.2
-
70
-
-
0037453721
-
Global phage diversity
-
Rohwer F (2003) Global phage diversity. Cell 113(2):141
-
(2003)
Cell
, vol.113
, Issue.2
, pp. 141
-
-
Rohwer, F.1
-
71
-
-
66149151286
-
Viruses manipulate the marine environment
-
Rohwer F, Thurber RV (2009) Viruses manipulate the marine environment. Nature 459(7244):207-212
-
(2009)
Nature
, vol.459
, Issue.7244
, pp. 207-212
-
-
Rohwer, F.1
Thurber, R.V.2
-
72
-
-
79956305695
-
Dragonfly cyclovirus, a novel single-stranded DNA virus discovered in dragonflies (Odonata: Anisoptera)
-
Rosario K, Marinov M et al (2011) Dragonfly cyclovirus, a novel single-stranded DNA virus discovered in dragonflies (Odonata: Anisoptera). J Gen Virol 92(Pt 6):1302-1308
-
(2011)
J Gen Virol
, vol.92
, pp. 1302-1308
-
-
Rosario, K.1
Marinov, M.2
-
73
-
-
75849154794
-
CRISPI: A CRISPR interactive database
-
Rousseau C, Gonnet M et al (2009) CRISPI: a CRISPR interactive database. Bioinformatics 25(24):3317-3318
-
(2009)
Bioinformatics
, vol.25
, Issue.24
, pp. 3317-3318
-
-
Rousseau, C.1
Gonnet, M.2
-
74
-
-
46949106154
-
Assembly of viral metagenomes from yellowstone hot springs
-
Schoenfeld T, Patterson M et al (2008) Assembly of viral metagenomes from yellowstone hot springs. Appl Environ Microbiol 74(13):4164-4174
-
(2008)
Appl Environ Microbiol
, vol.74
, Issue.13
, pp. 4164-4174
-
-
Schoenfeld, T.1
Patterson, M.2
-
75
-
-
78650254130
-
CRISPR/Cas and Cmr modules, mobility and evolution of adaptive immune systems
-
Shah SA, Garrett RA (2011) CRISPR/Cas and Cmr modules, mobility and evolution of adaptive immune systems. Res Microbiol 162(1):27-38
-
(2011)
Res Microbiol
, vol.162
, Issue.1
, pp. 27-38
-
-
Shah, S.A.1
Garrett, R.A.2
-
76
-
-
65549113872
-
Metagenomics: Concept, methodology, ecological inference and recent advances
-
Singh J, Behal A et al (2009) Metagenomics: concept, methodology, ecological inference and recent advances. Biotechnol J 4(4):480-494
-
(2009)
Biotechnol J
, vol.4
, Issue.4
, pp. 480-494
-
-
Singh, J.1
Behal, A.2
-
77
-
-
79953779608
-
Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system
-
Sinkunas T, Gasiunas G et al (2011) Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system. EMBO J 30:1335-1342
-
(2011)
EMBO J
, vol.30
, pp. 1335-1342
-
-
Sinkunas, T.1
Gasiunas, G.2
-
78
-
-
78149449833
-
Use of cellular CRISPR (Clusters of regularly interspaced short palindromic repeats) spacer-based microarrays for detection of viruses in environmental samples
-
Snyder JC, Bateson MM et al (2010) Use of cellular CRISPR (clusters of regularly interspaced short palindromic repeats) spacer-based microarrays for detection of viruses in environmental samples. Appl Environ Microbiol 76(21):7251-7258
-
(2010)
Appl Environ Microbiol
, vol.76
, Issue.21
, pp. 7251-7258
-
-
Snyder, J.C.1
Bateson, M.M.2
-
79
-
-
77950273399
-
Evolutionary dynamics of clustered irregularly interspaced short palindromic repeat systems in the ocean metagenome
-
Sorokin VA, Gelfand MS et al (2010) Evolutionary dynamics of clustered irregularly interspaced short palindromic repeat systems in the ocean metagenome. Appl Environ Microbiol 76(7):2136-2144
-
(2010)
Appl Environ Microbiol
, vol.76
, Issue.7
, pp. 2136-2144
-
-
Sorokin, V.A.1
Gelfand, M.S.2
-
80
-
-
77955085897
-
Self-targeting by CRISPR: Gene regulation or autoimmunity?
-
Stern A, Keren L et al (2010) Self-targeting by CRISPR: gene regulation or autoimmunity? Trends Genet 26(8):335-340
-
(2010)
Trends Genet
, vol.26
, Issue.8
, pp. 335-340
-
-
Stern, A.1
Keren, L.2
-
81
-
-
84865169354
-
CRISPR targeting reveals a reservoir of common phages associated with the human gut microbiome
-
Stern A, Mick E et al. (2012) CRISPR targeting reveals a reservoir of common phages associated with the human gut microbiome. Genome Res 22(10):1985-1994
-
(2012)
Genome Res
, vol.22
, Issue.10
, pp. 1985-1994
-
-
Stern, A.1
Mick, E.2
-
82
-
-
25144506135
-
Viruses in the sea
-
Suttle CA (2005) Viruses in the sea. Nature 437(7057):356-361
-
(2005)
Nature
, vol.437
, Issue.7057
, pp. 356-361
-
-
Suttle, C.A.1
-
83
-
-
79959855149
-
Probing individual environmental bacteria for viruses by using microfluidic digital PCR
-
Tadmor AD, Ottesen EA et al (2011) Probing individual environmental bacteria for viruses by using microfluidic digital PCR. Science 333(6038):58-62
-
(2011)
Science
, vol.333
, Issue.6038
, pp. 58-62
-
-
Tadmor, A.D.1
Ottesen, E.A.2
-
84
-
-
0033826796
-
Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systems
-
Thingstad TF (2000) Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systems. Limnol Oceanogr 45(6):1320-1328
-
(2000)
Limnol Oceanogr
, vol.45
, Issue.6
, pp. 1320-1328
-
-
Thingstad, T.F.1
-
85
-
-
0002058563
-
Theoretical models for the control of bacterial growth rate, abundance, diversity and carbon demand
-
Thingstad TF, Lignell R (1997) Theoretical models for the control of bacterial growth rate, abundance, diversity and carbon demand. Aquat Microb Ecol 13(1):19-27
-
(1997)
Aquat Microb Ecol
, vol.13
, Issue.1
, pp. 19-27
-
-
Thingstad, T.F.1
Lignell, R.2
-
86
-
-
79956154321
-
CRISPR distribution within the Escherichia coli species is not suggestive of immune-associated diversifying selection
-
Touchon M, Charpentier S et al (2011) CRISPR distribution within the Escherichia coli species is not suggestive of immune-associated diversifying selection. J Bacteriol 193(10):2460-2467
-
(2011)
J Bacteriol
, vol.193
, Issue.10
, pp. 2460-2467
-
-
Touchon, M.1
Charpentier, S.2
-
87
-
-
38149061877
-
Rapidly evolving CRISPRs implicated in acquired resistance of microorganisms to viruses
-
Tyson GW, Banfield JF (2008) Rapidly evolving CRISPRs implicated in acquired resistance of microorganisms to viruses. Environ Microbiol 10(1):200-207
-
(2008)
Environ Microbiol
, vol.10
, Issue.1
, pp. 200-207
-
-
Tyson, G.W.1
Banfield, J.F.2
-
88
-
-
84861117236
-
Persisting viral sequences shape CRISPR-based immunity
-
Weinberger A, Sun C et al. (2012) Persisting viral sequences shape CRISPR-based immunity. PLoS Comput Biol 8(4):e1002475
-
(2012)
Plos Comput Biol
, vol.8
, Issue.4
-
-
Weinberger, A.1
Sun, C.2
-
89
-
-
22144446352
-
Coevolutionary arms races between bacteria and bacteriophage
-
Weitz JS, Hartman H et al (2005) Coevolutionary arms races between bacteria and bacteriophage. Proc Natl Acad Sci USA 102(27):9535-9540
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.27
, pp. 9535-9540
-
-
Weitz, J.S.1
Hartman, H.2
-
90
-
-
67649911268
-
Metagenomic signatures of 86 microbial and viral metagenomes
-
Willner D, Thurber RV et al (2009) Metagenomic signatures of 86 microbial and viral metagenomes. Environ Microbiol 11(7):1752-1766
-
(2009)
Environ Microbiol
, vol.11
, Issue.7
, pp. 1752-1766
-
-
Willner, D.1
Thurber, R.V.2
-
91
-
-
77749309301
-
Trade-offs between competition and defense specialists among unicellular planktonic organisms: The “killing the winner” hypothesis revisited
-
Winter C, Bouvier T et al (2010) Trade-offs between competition and defense specialists among unicellular planktonic organisms: the “killing the winner” hypothesis revisited. Microbiol Mol Biol Rev 74(1):42-57
-
(2010)
Microbiol Mol Biol Rev
, vol.74
, Issue.1
, pp. 42-57
-
-
Winter, C.1
Bouvier, T.2
-
92
-
-
84861962107
-
Single cell genome sequencing
-
Yilmaz S, Singh AK (2012) Single cell genome sequencing. Curr Opin Biotechnol 23(3):437-443
-
(2012)
Curr Opin Biotechnol
, vol.23
, Issue.3
, pp. 437-443
-
-
Yilmaz, S.1
Singh, A.K.2
|