MMDiff: Quantitative testing for shape changes in ChIP-Seq data sets

BMC Genomics

Volumn 14, Issue 1, 2013, Pages

  Schweikert, Gabriele ^a,b   Cseke, Botond ^a   Clouaire, Thomas ^b,c   Bird, Adrian ^b   Sanguinetti, Guido ^a  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

^b UNIVERSITY OF EDINBURGH   (United Kingdom)

^c UNIVERSITÉ PAUL SABATIER   (France)

Author keywords

Cfp1; Chip Seq; Differential peak detection; H3K4me3; Histone modifications; Kernel methods; Maximum mean discrepancy

Indexed keywords

HISTONE H3; TRANSCRIPTION FACTOR CTCF;

ANALYTIC METHOD; ARTICLE; BINDING SITE; CHROMATIN IMMUNOPRECIPITATION; DATA ANALYSIS; EMPIRICISM; EPIGENETICS; GENETIC MARKER; HISTONE MODIFICATION; MMDIFF METHOD; PROTEIN BINDING; QUANTITATIVE ANALYSIS; REPRODUCIBILITY; SIMULATION;

ANIMALS; CELL LINE; CHROMATIN IMMUNOPRECIPITATION; COMPUTATIONAL BIOLOGY; COMPUTER SIMULATION; EPIGENOMICS; HISTONES; HUMANS; MICE; SEQUENCE ANALYSIS, DNA; STATISTICS, NONPARAMETRIC;

EID: 84887880021     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-826     Document Type: Article

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