Detecting differential binding of transcription factors with chiP-seq

Bioinformatics

Volumn 28, Issue 1, 2012, Pages 121-122

  Liang, Kun ^a,b   Keles, Sündüz ^a,b  

^a University of Wisconsin Madison   (United States)

^b UNIVERSITY OF WISCONSIN SCHOOL OF MEDICINE AND PUBLIC HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR;

ANIMAL; ARTICLE; CAENORHABDITIS ELEGANS; CHROMATIN IMMUNOPRECIPITATION; DNA MICROARRAY; DNA SEQUENCE; METABOLISM; PROTEIN BINDING;

ANIMALS; CAENORHABDITIS ELEGANS; CHROMATIN IMMUNOPRECIPITATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROTEIN BINDING; SEQUENCE ANALYSIS, DNA; TRANSCRIPTION FACTORS;

EID: 84855177111     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr605     Document Type: Article

References (7)

1. Kasowski, M. et al. (2010) Variation in transcription factor binding among humans. Science, 328, 232-235.
2. Niu, W. et al. (2011) Diverse transcription factor binding features revealed by genomewide ChIP-seq in C. elegans. Genome Res., 21, 245-254.
3. Robinson, M. et al. (2010) edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics, 26, 139.
4. Wilbanks, E. and Facciotti, M. (2010) Evaluation of algorithm performance in ChIP-seq peak detection. PloS One, 5, e11471.
5. Xu, H. et al. (2010) A signal-noise model for significance analysis of ChIP-seq with negative control. Bioinformatics, 26, 1199-1204.
6. Zheng, W. et al. (2010) Genetic analysis of variation in transcription factor binding in yeast. Nature, 464, 1187-1191.
7. Zhong, M. et al. (2010) Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response. PLoS Genet., 6, e1000848.