메뉴 건너뛰기




Volumn 41, Issue 6, 2013, Pages 1422-1426

Hot and crispy: CRISPR-Cas systems in the hyperthermophile Sulfolobus solfataricus

Author keywords

Cas6; Clustered regularly interspaced short palindromic repeats (CRISPR) CRISPRassociated (Cas) system; CRISPR RNA (crRNA); CRISPR associated complex for antiviral defence (Cascade); CRISPRmodule repeat associated mysterious protein (CMR); Sulfolobus solfataricus

Indexed keywords

ARCHAEAL RNA; CAS6 PROTEIN; CELLULAR APOPTOSIS SUSCEPTIBILITY PROTEIN; PALINDROMIC DNA; RIBONUCLEASE; RNA; UNCLASSIFIED DRUG;

EID: 84887868612     PISSN: 03005127     EISSN: 14708752     Source Type: Journal    
DOI: 10.1042/BST20130031     Document Type: Conference Paper
Times cited : (15)

References (30)
  • 1
    • 34250662138 scopus 로고    scopus 로고
    • The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
    • Grissa, I., Vergnaud, G. and Pourcel, C. (2007) The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats. BMC Bioinf. 8, 172
    • (2007) BMC Bioinf. , vol.8 , pp. 172
    • Grissa, I.1    Vergnaud, G.2    Pourcel, C.3
  • 2
    • 0032213855 scopus 로고    scopus 로고
    • Genetic profile of pNOB8 from Sulfolobus: The first conjugative plasmid from an archaeon
    • She, Q., Phan, H., Garrett, R.A., Albers, S.V., Stedman, K.M. and Zillig, W. (1998) Genetic profile of pNOB8 from Sulfolobus: the first conjugative plasmid from an archaeon. Extremophiles 2, 417-425
    • (1998) Extremophiles , vol.2 , pp. 417-425
    • She, Q.1    Phan, H.2    Garrett, R.A.3    Albers, S.V.4    Stedman, K.M.5    Zillig, W.6
  • 3
    • 0037385757 scopus 로고    scopus 로고
    • Genus-specific protein binding to the large clusters of DNA repeats (short regularly spaced repeats) present in Sulfolobus genomes
    • Peng, X., Brügger, K., Shen, B., Chen, L., She, Q. and Garrett, R.A. (2003) Genus-specific protein binding to the large clusters of DNA repeats (short regularly spaced repeats) present in Sulfolobus genomes. J. Bacteriol. 185, 2410-2417
    • (2003) J. Bacteriol. , vol.185 , pp. 2410-2417
    • Peng, X.1    Brügger, K.2    Shen, B.3    Chen, L.4    She, Q.5    Garrett, R.A.6
  • 5
    • 0036267740 scopus 로고    scopus 로고
    • Identification of genes that are associated with DNA repeats in prokaryotes
    • Jansen, R., van Embden, J.D.A., Gaastra, W. and Schouls, L.M. (2002) Identification of genes that are associated with DNA repeats in prokaryotes. Mol. Microbiol. 43, 1565-1575
    • (2002) Mol. Microbiol. , vol.43 , pp. 1565-1575
    • Jansen, R.1    Van Embden, J.D.A.2    Gaastra, W.3    Schouls, L.M.4
  • 6
    • 0037079680 scopus 로고    scopus 로고
    • A DNA repair system specific for thermophilic archaea and bacteria predicted by genomic context analysis
    • Makarova, K.S., Aravind, L., Grishin, N.V., Rogozin, I.B. and Koonin, E.V. (2002) A DNA repair system specific for thermophilic archaea and bacteria predicted by genomic context analysis. Nucleic Acids Res. 30, 482-496
    • (2002) Nucleic Acids Res. , vol.30 , pp. 482-496
    • Makarova, K.S.1    Aravind, L.2    Grishin, N.V.3    Rogozin, I.B.4    Koonin, E.V.5
  • 7
    • 16444385662 scopus 로고    scopus 로고
    • Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements
    • Mojica, F.J.M., Diéez-Villasenor, C.S., Garciéa- Martiénez, J.S. and Soria, E. (2005) Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements. J. Mol. Evol. 60, 174-182
    • (2005) J. Mol. Evol. , vol.60 , pp. 174-182
    • Mojica, F.J.M.1    Diéez-Villasenor, C.S.2    Garciéa- Martiénez, J.S.3    Soria, E.4
  • 8
    • 15844390228 scopus 로고    scopus 로고
    • CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies
    • Pourcel, C., Salvignol, G. and Vergnaud, G. (2005) CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies. Microbiology 151, 653-663
    • (2005) Microbiology , vol.151 , pp. 653-663
    • Pourcel, C.1    Salvignol, G.2    Vergnaud, G.3
  • 9
    • 23844505202 scopus 로고    scopus 로고
    • Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin
    • Bolotin, A., Quinquis, B., Sorokin, A. and Ehrlich, S.D. (2005) Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin. Microbiology 151, 2551-2561
    • (2005) Microbiology , vol.151 , pp. 2551-2561
    • Bolotin, A.1    Quinquis, B.2    Sorokin, A.3    Ehrlich, S.D.4
  • 10
    • 34248374277 scopus 로고    scopus 로고
    • A putative RNA-interference-based immune system in prokaryotes: Computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action
    • Makarova, K.S., Grishin, N.V., Shabalina, S.A., Wolf, Y.I. and Koonin, E.V. (2006) A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action. Biol. Direct 1, 7
    • (2006) Biol. Direct , vol.1 , pp. 7
    • Makarova, K.S.1    Grishin, N.V.2    Shabalina, S.A.3    Wolf, Y.I.4    Koonin, E.V.5
  • 11
    • 77249170201 scopus 로고    scopus 로고
    • CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea
    • Marraffini, L.A. and Sontheimer, E.J. (2010) CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea. Nat. Rev. Genet. 11, 181-190
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 181-190
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 12
    • 84876440888 scopus 로고    scopus 로고
    • CRISPR-Cas systems and RNA-guided interference
    • Barrangou, R. (2013) CRISPR-Cas systems and RNA-guided interference. Wiley Interdiscip. Rev.: RNA 4, 267-278
    • (2013) Wiley Interdiscip. Rev.: RNA , vol.4 , pp. 267-278
    • Barrangou, R.1
  • 13
    • 74249095519 scopus 로고    scopus 로고
    • CRISPR/Cas, the immune system of bacteria and archaea
    • Horvath, P. and Barrangou, R. (2010) CRISPR/Cas, the immune system of bacteria and archaea. Science 327, 167-170
    • (2010) Science , vol.327 , pp. 167-170
    • Horvath, P.1    Barrangou, R.2
  • 14
    • 84857097177 scopus 로고    scopus 로고
    • RNA-guided genetic silencing systems in bacteria and archaea
    • Wiedenheft, B.B., Sternberg, S.H.S. and Doudna, J.A.J. (2012) RNA-guided genetic silencing systems in bacteria and archaea. Nature 482, 331-338
    • (2012) Nature , vol.482 , pp. 331-338
    • Wiedenheft, B.B.1    Sternberg, S.H.S.2    Doudna, J.A.J.3
  • 16
    • 66349134987 scopus 로고    scopus 로고
    • Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defense
    • Wiedenheft, B., Zhou, K., Jinek, M., Coyle, S.M., Ma, W. and Doudna, J.A. (2009) Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defense. Structure 17, 904-912
    • (2009) Structure , vol.17 , pp. 904-912
    • Wiedenheft, B.1    Zhou, K.2    Jinek, M.3    Coyle, S.M.4    Ma, W.5    Doudna, J.A.6
  • 18
  • 19
    • 79958754524 scopus 로고    scopus 로고
    • Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE)
    • Lintner, N.G., Kerou, M., Brumfield, S.K., Graham, S., Liu, H., Naismith, J.H., Sdano, M., Peng, N., She, Q., Copie, V. et al. (2011) Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE). J. Biol. Chem. 286, 21643-21656
    • (2011) J. Biol. Chem. , vol.286 , pp. 21643-21656
    • Lintner, N.G.1    Kerou, M.2    Brumfield, S.K.3    Graham, S.4    Liu, H.5    Naismith, J.H.6    Sdano, M.7    Peng, N.8    She, Q.9    Copie, V.10
  • 21
    • 84877757610 scopus 로고    scopus 로고
    • Structure of a dimeric crenarchaeal Cas6 enzyme with an atypical active site for CRISPR RNA processing
    • Reeks, J., Sokolowski, R.D., Graham, S., Liu, H., Naismith, J.H. and White, M.F. (2013) Structure of a dimeric crenarchaeal Cas6 enzyme with an atypical active site for CRISPR RNA processing. Biochem. J. 452, 223-230
    • (2013) Biochem. J. , vol.452 , pp. 223-230
    • Reeks, J.1    Sokolowski, R.D.2    Graham, S.3    Liu, H.4    Naismith, J.H.5    White, M.F.6
  • 22
    • 84874930818 scopus 로고    scopus 로고
    • Recognition and cleavage of a nonstructured CRISPR RNA by its processing endoribonuclease Cas6
    • Shao, Y. and Li, H. (2013) Recognition and cleavage of a nonstructured CRISPR RNA by its processing endoribonuclease Cas6. Structure 21, 385-393
    • (2013) Structure , vol.21 , pp. 385-393
    • Shao, Y.1    Li, H.2
  • 23
    • 79551694059 scopus 로고    scopus 로고
    • Interaction of the Cas6 riboendonuclease with CRISPR RNAs: Recognition and cleavage
    • Wang, R., Preamplume, G., Terns, M.P., Terns, R.M. and Li, H. (2011) Interaction of the Cas6 riboendonuclease with CRISPR RNAs: recognition and cleavage. Structure 19, 257-264
    • (2011) Structure , vol.19 , pp. 257-264
    • Wang, R.1    Preamplume, G.2    Terns, M.P.3    Terns, R.M.4    Li, H.5
  • 24
    • 84879584456 scopus 로고    scopus 로고
    • CRISPR interference: A structural perspective
    • Reeks, J., Naismith, J.H. and White, M.F. (2013) CRISPR interference: a structural perspective. Biochem. J. 453, 155-166
    • (2013) Biochem. J. , vol.453 , pp. 155-166
    • Reeks, J.1    Naismith, J.H.2    White, M.F.3
  • 25
    • 77956498326 scopus 로고    scopus 로고
    • Sequence-and structure-specific RNA processing by a CRISPR endonuclease
    • Haurwitz, R.E., Jinek, M., Wiedenheft, B., Zhou, K. and Doudna, J.A. (2010) Sequence- and structure-specific RNA processing by a CRISPR endonuclease. Science 329, 1355-1358
    • (2010) Science , vol.329 , pp. 1355-1358
    • Haurwitz, R.E.1    Jinek, M.2    Wiedenheft, B.3    Zhou, K.4    Doudna, J.A.5
  • 26
    • 79958825675 scopus 로고    scopus 로고
    • An RNA-induced conformational change required for CRISPR RNA cleavage by the endoribonuclease Cse3
    • Sashital, D.G., Jinek, M. and Doudna, J.A. (2011) An RNA-induced conformational change required for CRISPR RNA cleavage by the endoribonuclease Cse3. Nat. Struct. Mol. Biol. 18, 680-687
    • (2011) Nat. Struct. Mol. Biol. , vol.18 , pp. 680-687
    • Sashital, D.G.1    Jinek, M.2    Doudna, J.A.3
  • 27
    • 84879011920 scopus 로고    scopus 로고
    • Structure of the archaeal Cascade subunit Csa5: Relating the small subunits of CRISPR effector complexes
    • Reeks, J., Graham, S., Anderson, L., Liu, H., White, M.F. and Naismith, J.H. (2013) Structure of the archaeal Cascade subunit Csa5: relating the small subunits of CRISPR effector complexes. RNA Biol. 10, 13-12
    • (2013) RNA Biol. , vol.10 , pp. 13-12
    • Reeks, J.1    Graham, S.2    Anderson, L.3    Liu, H.4    White, M.F.5    Naismith, J.H.6
  • 29
    • 84855475577 scopus 로고    scopus 로고
    • Mature clustered, regularly interspaced, short palindromic repeats RNA (crRNA) length is measured by a ruler mechanism anchored at the precursor processing site
    • Hatoum-Aslan, A., Maniv, I. and Marraffini, L.A. (2011) Mature clustered, regularly interspaced, short palindromic repeats RNA (crRNA) length is measured by a ruler mechanism anchored at the precursor processing site. Proc. Natl. Acad. Sci. U.S.A. 108, 21218-21222
    • (2011) Proc. Natl. Acad. Sci. U.S.A. , vol.108 , pp. 21218-21222
    • Hatoum-Aslan, A.1    Maniv, I.2    Marraffini, L.A.3
  • 30
    • 84887876790 scopus 로고    scopus 로고
    • Crystal structure of the Cmr2-Cmr3 subcomplex in the CRISPR-Cas RNA silencing effector complex
    • Osawa, T., Inanaga, H. and Numata, T. (2013) Crystal structure of the Cmr2-Cmr3 subcomplex in the CRISPR-Cas RNA silencing effector complex. J. Mol. Biol. 482, 331-338
    • (2013) J. Mol. Biol. , vol.482 , pp. 331-338
    • Osawa, T.1    Inanaga, H.2    Numata, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.