-
1
-
-
34250662138
-
The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
-
Grissa, I., Vergnaud, G. and Pourcel, C. (2007) The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats. BMC Bioinf. 8, 172
-
(2007)
BMC Bioinf.
, vol.8
, pp. 172
-
-
Grissa, I.1
Vergnaud, G.2
Pourcel, C.3
-
2
-
-
0032213855
-
Genetic profile of pNOB8 from Sulfolobus: The first conjugative plasmid from an archaeon
-
She, Q., Phan, H., Garrett, R.A., Albers, S.V., Stedman, K.M. and Zillig, W. (1998) Genetic profile of pNOB8 from Sulfolobus: the first conjugative plasmid from an archaeon. Extremophiles 2, 417-425
-
(1998)
Extremophiles
, vol.2
, pp. 417-425
-
-
She, Q.1
Phan, H.2
Garrett, R.A.3
Albers, S.V.4
Stedman, K.M.5
Zillig, W.6
-
3
-
-
0037385757
-
Genus-specific protein binding to the large clusters of DNA repeats (short regularly spaced repeats) present in Sulfolobus genomes
-
Peng, X., Brügger, K., Shen, B., Chen, L., She, Q. and Garrett, R.A. (2003) Genus-specific protein binding to the large clusters of DNA repeats (short regularly spaced repeats) present in Sulfolobus genomes. J. Bacteriol. 185, 2410-2417
-
(2003)
J. Bacteriol.
, vol.185
, pp. 2410-2417
-
-
Peng, X.1
Brügger, K.2
Shen, B.3
Chen, L.4
She, Q.5
Garrett, R.A.6
-
4
-
-
13144269598
-
Identification of novel non-coding RNAs as potential antisense regulations in the archaeon Sulfolobus solfataricus
-
Tang, T.H., Polacek, N., Zywicki, M., Huber, H., Bru? gger, K., Garrett, R., Bachellerie, J.P. and Huttenhofer, A. (2005) Identification of novel non-coding RNAs as potential antisense regulations in the archaeon Sulfolobus solfataricus. Mol. Microbiol. 55, 469-481
-
(2005)
Mol. Microbiol.
, vol.55
, pp. 469-481
-
-
Tang, T.H.1
Polacek, N.2
Zywicki, M.3
Huber, H.4
Brügger, K.5
Garrett, R.6
Bachellerie, J.P.7
Huttenhofer, A.8
-
5
-
-
0036267740
-
Identification of genes that are associated with DNA repeats in prokaryotes
-
Jansen, R., van Embden, J.D.A., Gaastra, W. and Schouls, L.M. (2002) Identification of genes that are associated with DNA repeats in prokaryotes. Mol. Microbiol. 43, 1565-1575
-
(2002)
Mol. Microbiol.
, vol.43
, pp. 1565-1575
-
-
Jansen, R.1
Van Embden, J.D.A.2
Gaastra, W.3
Schouls, L.M.4
-
6
-
-
0037079680
-
A DNA repair system specific for thermophilic archaea and bacteria predicted by genomic context analysis
-
Makarova, K.S., Aravind, L., Grishin, N.V., Rogozin, I.B. and Koonin, E.V. (2002) A DNA repair system specific for thermophilic archaea and bacteria predicted by genomic context analysis. Nucleic Acids Res. 30, 482-496
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 482-496
-
-
Makarova, K.S.1
Aravind, L.2
Grishin, N.V.3
Rogozin, I.B.4
Koonin, E.V.5
-
7
-
-
16444385662
-
Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements
-
Mojica, F.J.M., Diéez-Villasenor, C.S., Garciéa- Martiénez, J.S. and Soria, E. (2005) Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements. J. Mol. Evol. 60, 174-182
-
(2005)
J. Mol. Evol.
, vol.60
, pp. 174-182
-
-
Mojica, F.J.M.1
Diéez-Villasenor, C.S.2
Garciéa- Martiénez, J.S.3
Soria, E.4
-
8
-
-
15844390228
-
CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies
-
Pourcel, C., Salvignol, G. and Vergnaud, G. (2005) CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies. Microbiology 151, 653-663
-
(2005)
Microbiology
, vol.151
, pp. 653-663
-
-
Pourcel, C.1
Salvignol, G.2
Vergnaud, G.3
-
9
-
-
23844505202
-
Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin
-
Bolotin, A., Quinquis, B., Sorokin, A. and Ehrlich, S.D. (2005) Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin. Microbiology 151, 2551-2561
-
(2005)
Microbiology
, vol.151
, pp. 2551-2561
-
-
Bolotin, A.1
Quinquis, B.2
Sorokin, A.3
Ehrlich, S.D.4
-
10
-
-
34248374277
-
A putative RNA-interference-based immune system in prokaryotes: Computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action
-
Makarova, K.S., Grishin, N.V., Shabalina, S.A., Wolf, Y.I. and Koonin, E.V. (2006) A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action. Biol. Direct 1, 7
-
(2006)
Biol. Direct
, vol.1
, pp. 7
-
-
Makarova, K.S.1
Grishin, N.V.2
Shabalina, S.A.3
Wolf, Y.I.4
Koonin, E.V.5
-
11
-
-
77249170201
-
CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea
-
Marraffini, L.A. and Sontheimer, E.J. (2010) CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea. Nat. Rev. Genet. 11, 181-190
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 181-190
-
-
Marraffini, L.A.1
Sontheimer, E.J.2
-
12
-
-
84876440888
-
CRISPR-Cas systems and RNA-guided interference
-
Barrangou, R. (2013) CRISPR-Cas systems and RNA-guided interference. Wiley Interdiscip. Rev.: RNA 4, 267-278
-
(2013)
Wiley Interdiscip. Rev.: RNA
, vol.4
, pp. 267-278
-
-
Barrangou, R.1
-
13
-
-
74249095519
-
CRISPR/Cas, the immune system of bacteria and archaea
-
Horvath, P. and Barrangou, R. (2010) CRISPR/Cas, the immune system of bacteria and archaea. Science 327, 167-170
-
(2010)
Science
, vol.327
, pp. 167-170
-
-
Horvath, P.1
Barrangou, R.2
-
14
-
-
84857097177
-
RNA-guided genetic silencing systems in bacteria and archaea
-
Wiedenheft, B.B., Sternberg, S.H.S. and Doudna, J.A.J. (2012) RNA-guided genetic silencing systems in bacteria and archaea. Nature 482, 331-338
-
(2012)
Nature
, vol.482
, pp. 331-338
-
-
Wiedenheft, B.B.1
Sternberg, S.H.S.2
Doudna, J.A.J.3
-
15
-
-
79956157571
-
Evolution and classification of the CRISPR-Cas systems
-
Makarova, K.S., Haft, D.H., Barrangou, R., Brouns, S.J. J., Charpentier, E., Horvath, P., Moineau, S., Mojica, F.J.M., Wolf, Y.I., Yakunin, A.F. et al. (2011) Evolution and classification of the CRISPR-Cas systems. Nat. Rev. Microbiol. 9, 467-477
-
(2011)
Nat. Rev. Microbiol.
, vol.9
, pp. 467-477
-
-
Makarova, K.S.1
Haft, D.H.2
Barrangou, R.3
Brouns, S.J.J.4
Charpentier, E.5
Horvath, P.6
Moineau, S.7
Mojica, F.J.M.8
Wolf, Y.I.9
Yakunin, A.F.10
-
16
-
-
66349134987
-
Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defense
-
Wiedenheft, B., Zhou, K., Jinek, M., Coyle, S.M., Ma, W. and Doudna, J.A. (2009) Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defense. Structure 17, 904-912
-
(2009)
Structure
, vol.17
, pp. 904-912
-
-
Wiedenheft, B.1
Zhou, K.2
Jinek, M.3
Coyle, S.M.4
Ma, W.5
Doudna, J.A.6
-
17
-
-
78651083184
-
A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair
-
Babu, M., Beloglazova, N., Flick, R., Graham, C., Skarina, T., Nocek, B., Gagarinova, A., Pogoutse, O., Brown, G., Binkowski, A. et al. (2010) A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair. Mol. Microbiol. 79, 484-502
-
(2010)
Mol. Microbiol.
, vol.79
, pp. 484-502
-
-
Babu, M.1
Beloglazova, N.2
Flick, R.3
Graham, C.4
Skarina, T.5
Nocek, B.6
Gagarinova, A.7
Pogoutse, O.8
Brown, G.9
Binkowski, A.10
-
18
-
-
62949197925
-
CRISPR families of the crenarchaeal genus Sulfolobus: Bidirectional transcription and dynamic properties
-
Lillestøl, R.K., Shah, S.A., Brugger, K., Redder, P., Phan, H., Christiansen, J. and Garrett, R.A. (2009) CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties. Mol. Microbiol. 72, 259-272
-
(2009)
Mol. Microbiol.
, vol.72
, pp. 259-272
-
-
Lillestøl, R.K.1
Shah, S.A.2
Brugger, K.3
Redder, P.4
Phan, H.5
Christiansen, J.6
Garrett, R.A.7
-
19
-
-
79958754524
-
Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE)
-
Lintner, N.G., Kerou, M., Brumfield, S.K., Graham, S., Liu, H., Naismith, J.H., Sdano, M., Peng, N., She, Q., Copie, V. et al. (2011) Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE). J. Biol. Chem. 286, 21643-21656
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 21643-21656
-
-
Lintner, N.G.1
Kerou, M.2
Brumfield, S.K.3
Graham, S.4
Liu, H.5
Naismith, J.H.6
Sdano, M.7
Peng, N.8
She, Q.9
Copie, V.10
-
20
-
-
84856778250
-
Structure and mechanism of the CMR complex for CRISPR-mediated antiviral immunity
-
Zhang, J., Rouillon, C., Kerou, M., Reeks, J., Brugger, K., Graham, S., Reimann, J., Cannone, G., Liu, H., Albers, S.-V. et al. (2012) Structure and mechanism of the CMR complex for CRISPR-mediated antiviral immunity. Mol. Cell 45, 303-313
-
(2012)
Mol. Cell
, vol.45
, pp. 303-313
-
-
Zhang, J.1
Rouillon, C.2
Kerou, M.3
Reeks, J.4
Brugger, K.5
Graham, S.6
Reimann, J.7
Cannone, G.8
Liu, H.9
Albers, S.-V.10
-
21
-
-
84877757610
-
Structure of a dimeric crenarchaeal Cas6 enzyme with an atypical active site for CRISPR RNA processing
-
Reeks, J., Sokolowski, R.D., Graham, S., Liu, H., Naismith, J.H. and White, M.F. (2013) Structure of a dimeric crenarchaeal Cas6 enzyme with an atypical active site for CRISPR RNA processing. Biochem. J. 452, 223-230
-
(2013)
Biochem. J.
, vol.452
, pp. 223-230
-
-
Reeks, J.1
Sokolowski, R.D.2
Graham, S.3
Liu, H.4
Naismith, J.H.5
White, M.F.6
-
22
-
-
84874930818
-
Recognition and cleavage of a nonstructured CRISPR RNA by its processing endoribonuclease Cas6
-
Shao, Y. and Li, H. (2013) Recognition and cleavage of a nonstructured CRISPR RNA by its processing endoribonuclease Cas6. Structure 21, 385-393
-
(2013)
Structure
, vol.21
, pp. 385-393
-
-
Shao, Y.1
Li, H.2
-
23
-
-
79551694059
-
Interaction of the Cas6 riboendonuclease with CRISPR RNAs: Recognition and cleavage
-
Wang, R., Preamplume, G., Terns, M.P., Terns, R.M. and Li, H. (2011) Interaction of the Cas6 riboendonuclease with CRISPR RNAs: recognition and cleavage. Structure 19, 257-264
-
(2011)
Structure
, vol.19
, pp. 257-264
-
-
Wang, R.1
Preamplume, G.2
Terns, M.P.3
Terns, R.M.4
Li, H.5
-
24
-
-
84879584456
-
CRISPR interference: A structural perspective
-
Reeks, J., Naismith, J.H. and White, M.F. (2013) CRISPR interference: a structural perspective. Biochem. J. 453, 155-166
-
(2013)
Biochem. J.
, vol.453
, pp. 155-166
-
-
Reeks, J.1
Naismith, J.H.2
White, M.F.3
-
25
-
-
77956498326
-
Sequence-and structure-specific RNA processing by a CRISPR endonuclease
-
Haurwitz, R.E., Jinek, M., Wiedenheft, B., Zhou, K. and Doudna, J.A. (2010) Sequence- and structure-specific RNA processing by a CRISPR endonuclease. Science 329, 1355-1358
-
(2010)
Science
, vol.329
, pp. 1355-1358
-
-
Haurwitz, R.E.1
Jinek, M.2
Wiedenheft, B.3
Zhou, K.4
Doudna, J.A.5
-
26
-
-
79958825675
-
An RNA-induced conformational change required for CRISPR RNA cleavage by the endoribonuclease Cse3
-
Sashital, D.G., Jinek, M. and Doudna, J.A. (2011) An RNA-induced conformational change required for CRISPR RNA cleavage by the endoribonuclease Cse3. Nat. Struct. Mol. Biol. 18, 680-687
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 680-687
-
-
Sashital, D.G.1
Jinek, M.2
Doudna, J.A.3
-
27
-
-
84879011920
-
Structure of the archaeal Cascade subunit Csa5: Relating the small subunits of CRISPR effector complexes
-
Reeks, J., Graham, S., Anderson, L., Liu, H., White, M.F. and Naismith, J.H. (2013) Structure of the archaeal Cascade subunit Csa5: relating the small subunits of CRISPR effector complexes. RNA Biol. 10, 13-12
-
(2013)
RNA Biol.
, vol.10
, pp. 13-12
-
-
Reeks, J.1
Graham, S.2
Anderson, L.3
Liu, H.4
White, M.F.5
Naismith, J.H.6
-
28
-
-
70449753811
-
RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex
-
Hale, C.R., Zhao, P., Olson, S., Duff, M.O., Graveley, B.R., Wells, L., Terns, R.M. and Terns, M.P. (2009) RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex. Cell 139, 945-956
-
(2009)
Cell
, vol.139
, pp. 945-956
-
-
Hale, C.R.1
Zhao, P.2
Olson, S.3
Duff, M.O.4
Graveley, B.R.5
Wells, L.6
Terns, R.M.7
Terns, M.P.8
-
29
-
-
84855475577
-
Mature clustered, regularly interspaced, short palindromic repeats RNA (crRNA) length is measured by a ruler mechanism anchored at the precursor processing site
-
Hatoum-Aslan, A., Maniv, I. and Marraffini, L.A. (2011) Mature clustered, regularly interspaced, short palindromic repeats RNA (crRNA) length is measured by a ruler mechanism anchored at the precursor processing site. Proc. Natl. Acad. Sci. U.S.A. 108, 21218-21222
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 21218-21222
-
-
Hatoum-Aslan, A.1
Maniv, I.2
Marraffini, L.A.3
-
30
-
-
84887876790
-
Crystal structure of the Cmr2-Cmr3 subcomplex in the CRISPR-Cas RNA silencing effector complex
-
Osawa, T., Inanaga, H. and Numata, T. (2013) Crystal structure of the Cmr2-Cmr3 subcomplex in the CRISPR-Cas RNA silencing effector complex. J. Mol. Biol. 482, 331-338
-
(2013)
J. Mol. Biol.
, vol.482
, pp. 331-338
-
-
Osawa, T.1
Inanaga, H.2
Numata, T.3
|