Human caliciviruses detected in HIV-seropositive children in Kenya

Journal of Medical Virology

Volumn 86, Issue 1, 2014, Pages 75-81

  Mans, Janet ^a   Murray, Tanya Y ^a   Kiulia, Nicholas M ^b   Mwenda, Jason M ^b   Musoke, Rachel N ^c   Taylor, Maureen B ^a,d  

^a UNIVERSITY OF PRETORIA   (South Africa)

^b INSTITUTE OF PRIMATE RESEARCH   (Kenya)

^c UNIVERSITY OF NAIROBI   (Kenya)

^d NATIONAL HEALTH LABORATORY SERVICE   (South Africa)

Author keywords

Africa; Diarrhea; Norovirus; Pediatric; Sapovirus

Indexed keywords

ARTICLE; CALICIVIRUS; DIARRHEA; ENTERIC VIRUS; GENETIC VARIABILITY; GENOTYPE; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; MIXED INFECTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PREVALENCE; SYMPTOM; VIRUS DETECTION; VIRUS STRAIN;

NOROVIRUS; SAPOVIRUS;

AFRICA; DIARRHEA; NOROVIRUS; PEDIATRIC; SAPOVIRUS;

ADOLESCENT; CALICIVIRIDAE; CALICIVIRIDAE INFECTIONS; CHILD; CHILD, PRESCHOOL; COINFECTION; FEMALE; GENETIC VARIATION; GENOTYPE; HIV INFECTIONS; HUMANS; INFANT; KENYA; MALE; MOLECULAR SEQUENCE DATA; PREVALENCE; RNA, VIRAL; SEQUENCE ANALYSIS, DNA;

EID: 84887815783     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.23784     Document Type: Article

References (50)

1. Ayukekbong J, Lindh M, Nenonen N, Tah F, Nkuo-Akenji T, Bergstrom T. 2011. Enteric viruses in healthy children in Cameroon: Viral load and genotyping of norovirus strains. J Med Virol 83:2135-2142.
2. Barreira DM, Ferreira MS, Fumian TM, Checon R, de Sadovsky AD, Leite JP, Miagostovich MP, Spano LC. 2010. Viral load and genotypes of noroviruses in symptomatic and asymptomatic children in Southeastern Brazil. J Clin Virol 47:60-64.
3. Bok K, Green KY. 2012. Norovirus gastroenteritis in immunocompromised patients. N Engl J Med 367:2126-2132.
4. Chan MC, Sung JJ, Lam RK, Chan PK, Lai RW, Leung WK. 2006. Sapovirus detection by quantitative real-time RT-PCR in clinical stool specimens. J Virol Methods 134:146-153.
5. Cheng WX, Ye XH, Yang XM, Li YN, Jin M, Jin Y, Duan ZJ. 2010. Epidemiological study of human calicivirus infection in children with gastroenteritis in Lanzhou from 2001 to 2007. Arch Virol 155:553-555.
6. De Cock KM, Jaffe HW, Curran JW. 2012. The evolving epidemiology of HIV/AIDS. AIDS 26:1205-1213.
7. Eden JS, Bull RA, Tu E, McIver CJ, Lyon MJ, Marshall JA, Smith DW, Musto J, Rawlinson WD, White PA. 2010. Norovirus GII.4 variant 2006b caused epidemics of acute gastroenteritis in Australia during 2007 and 2008. J Clin Virol 49:265-271.
8. Farkas T, Zhong WM, Jing Y, Huang PW, Espinosa SM, Martinez N, Morrow AL, Ruiz-Palacios GM, Pickering LK, Jiang X. 2004. Genetic diversity among sapoviruses. Arch Virol 149:1309-1323.
9. Ferreira MS, Xavier Mda P, Tinga AC, Rose TL, Fumian TM, Fialho AM, de Assis RM, Carvalho Costa FA, de Oliveira SA, Leite JP, Miagostovich MP. 2012. Assessment of gastroenteric viruses frequency in a children's day care center in Rio De Janeiro, Brazil: A fifteen year study (1994-2008). PLoS ONE 7:e33754.
10. Gonzalez GG, Pujol FH, Liprandi F, Deibis L, Ludert JE. 1998. Prevalence of enteric viruses in human immunodeficiency virus seropositive patients in Venezuela. J Med Virol 55:288-292.
11. Green K. 2007. Caliciviridae: The noroviruses. In: Knipe DM, Howley PM, Griffin DE, Lamb RA, Martin MA, Roizman B, Straus SE, editors. Field's virology. 5th edition. Philadelphia, PA: Lippincott Williams & Wilkins. pp 949-979.
12. Greening GE, Hewitt J, Rivera-Aban M, Croucher D. 2012. Molecular epidemiology of norovirus gastroenteritis outbreaks in New Zealand from 2002 to 2009. J Med Virol 84:1449-1458.
13. Hall TA. 1999. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41:95-98.
14. Harada S, Okada M, Yahiro S, Nishimura K, Matsuo S, Miyasaka J, Nakashima R, Shimada Y, Ueno T, Ikezawa S, Shinozaki K, Katayama K, Wakita T, Takeda N, Oka T. 2009. Surveillance of pathogens in outpatients with gastroenteritis and characterization of sapovirus strains between 2002 and 2007 in Kumamoto Prefecture, Japan. J Med Virol 81:1117-1127.
15. Harada S, Oka T, Tokuoka E, Kiyota N, Nishimura K, Shimada Y, Ueno T, Ikezawa S, Wakita T, Wang Q, Saif LJ, Katayama K. 2012. A confirmation of sapovirus re-infection gastroenteritis cases with different genogroups and genetic shifts in the evolving sapovirus genotypes, 2002-2011. Arch Virol 157:1999-2003.
16. Hoa Tran TN, Trainor E, Nakagomi T, Cunliffe NA, Nakagomi O. 2013. Molecular epidemiology of noroviruses associated with acute sporadic gastroenteritis in children: Global distribution of genogroups, genotypes and GII.4 variants. J Clin Virol 56:185-193.
17. Johnsen CK, Midgley S, Bottiger B. 2009. Genetic diversity of sapovirus infections in Danish children 2005-2007. J Clin Virol 46:265-269.
18. Kamel AH, Ali MA, El-Nady HG, de Rougemont A, Pothier P, Belliot G. 2009. Predominance and circulation of enteric viruses in the region of Greater Cairo, Egypt. J Clin Microbiol 47:1037-1045.
19. Kitajima M, Oka T, Haramoto E, Katayama H, Takeda N, Katayama K, Ohgaki S. 2010. Detection and genetic analysis of human sapoviruses in river water in Japan. Appl Environ Microbiol 76:2461-2467.
20. Kiulia NM, Mwenda JM, Nyachieo A, Nyaundi JK, Steele AD, Taylor MB. 2007. Astrovirus infection in young Kenyan children with diarrhoea. J Trop Pediatr 53:206-209.
21. Kiulia NM, Nyaundi JK, Peenze I, Nyachieo A, Musoke RN, Steele AD, Mwenda JM. 2009. Rotavirus infections among HIV-infected children in Nairobi, Kenya. J Trop Pediatr 55:318-323.
22. Koopmans M. 2008. Progress in understanding norovirus epidemiology. Curr Opin Infect Dis 21:544-552.
23. Kroneman A, Vennema H, Deforche K, v d Avoort H, Penaranda S, Oberste MS, Vinje J, Koopmans M. 2011. An automated genotyping tool for enteroviruses and noroviruses. J Clin Virol 51:121-125.
24. Lorrot M, Bon F, El Hajje MJ, Aho S, Wolfer M, Giraudon H, Kaplon J, Marc E, Raymond J, Lebon P, Pothier P, Gendrel D. 2011. Epidemiology and clinical features of gastroenteritis in hospitalised children: Prospective survey during a 2-year period in a Parisian hospital, France. Eur J Clin Microbiol Infect Dis 30:361-368.
25. Magwalivha M, Wolfaardt M, Kiulia NM, van Zyl WB, Mwenda JM, Taylor MB. 2010. High prevalence of species D human adenoviruses in fecal specimens from Urban Kenyan children with diarrhea. J Med Virol 82:77-84.
26. Mans J, de Villiers JC, du Plessis NM, Avenant T, Taylor MB. 2010. Emerging norovirus GII.4 2008 variant detected in hospitalised paediatric patients in South Africa. J Clin Virol 49:258-264.
27. Mans J, Netshikweta R, Magwalivha M, van Zyl WB, Taylor MB. 2013. Diverse norovirus genotypes identified in sewage-polluted river water in South Africa. Epidemiol Infect 141:303-313.
28. Medici MC, Tummolo F, Albonetti V, Abelli LA, Chezzi C, Calderaro A. 2012. Molecular detection and epidemiology of astrovirus, bocavirus, and sapovirus in Italian children admitted to hospital with acute gastroenteritis, 2008-2009. J Med Virol 84:643-650.
29. Miyoshi M, Yoshizumi S, Kanda N, Karino T, Nagano H, Kudo S, Okano M, Ishida S. 2010. Different genotypic sapoviruses detected in two simultaneous outbreaks of gastroenteritis among schoolchildren in the same school district in Hokkaido, Japan. Jpn J Infect Dis 63:75-78.
30. Monica B, Ramani S, Banerjee I, Primrose B, Iturriza-Gomara M, Gallimore CI, Brown DW, Fathima M, Moses PD, Gray JJ, Kang G. 2007. Human caliciviruses in symptomatic and asymptomatic infections in children in Vellore, South India. J Med Virol 79:544-551.
31. Murata T, Katsushima N, Mizuta K, Muraki Y, Hongo S, Matsuzaki Y. 2007. Prolonged norovirus shedding in infants < or = 6 months of age with gastroenteritis. Pediatr Infect Dis J 26:46-49.
32. Murray TY, Mans J, Taylor MB. 2013a. Human calicivirus diversity in wastewater in South Africa. J Appl Microbiol 114:1843-1853.
33. Murray TY, Mans J, Taylor MB. 2013b. First detection of human sapoviruses in river water in South Africa. Water Sci Technol 67:2776-2783.
34. Nakata S, Honma S, Numata K, Kogawa K, Ukae S, Adachi N, Jiang X, Estes MK, Gatheru Z, Tukei PM, Chiba S. 1998. Prevalence of human calicivirus infections in Kenya as determined by enzyme immunoassays for three genogroups of the virus. J Clin Microbiol 36:3160-3163.
35. Okada M, Ogawa T, Yoshizumi H, Kubonoya H, Shinozaki K. 2007. Genetic variation of the norovirus GII-4 genotype associated with a large number of outbreaks in Chiba prefecture, Japan. Arch Virol 152:2249-2252.
36. Oldak E, Sulik A, Rozkiewicz D, Liwoch-Nienartowicz N. 2012. Norovirus infections in children under 5 years of age hospitalized due to the acute viral gastroenteritis in northeastern Poland. Eur J Clin Microbiol Infect Dis 31:417-422.
37. Phan TG, Trinh QD, Yagyu F, Okitsu S, Ushijima H. 2007. Emergence of rare sapovirus genotype among infants and children with acute gastroenteritis in Japan. Eur J Clin Microbiol Infect Dis 26:21-27.
38. Puustinen L, Blazevic V, Huhti L, Szakal ED, Halkosalo A, Salminen M, Vesikari T. 2012. Norovirus genotypes in endemic acute gastroenteritis of infants and children in Finland between 1994 and 2007. Epidemiol Infect 140:268-275.
39. Rockx B, De Wit M, Vennema H, Vinje J, De Bruin E, Van Duynhoven Y, Koopmans M. 2002. Natural history of human calicivirus infection: A prospective cohort study. Clin Infect Dis 35:246-253.
40. Rodriguez-Guillen L, Vizzi E, Alcala AC, Pujol FH, Liprandi F, Ludert JE. 2005. Calicivirus infection in human immunodeficiency virus seropositive children and adults. J Clin Virol 33:104-109.
41. Sano D, Pérez-Sautu U, Guix S, Pintó RM, Miura T, Okabe S, Bosch A. 2011. Quantification and genotyping of human sapoviruses in the Llobregat river catchment, Spain. Appl Environ Microbiol 77:1111-1114.
42. Schorn R, Hohne M, Meerbach A, Bossart W, Wuthrich RP, Schreier E, Muller NJ, Fehr T. 2010. Chronic norovirus infection after kidney transplantation: Molecular evidence for immune-driven viral evolution. Clin Infect Dis 51:307-314.
43. Sdiri-Loulizi K, Ambert-Balay K, Gharbi-Khelifi H, Sakly N, Hassine M, Chouchane S, Guediche MN, Pothier P, Aouni M. 2009. Molecular epidemiology of norovirus gastroenteritis investigated using samples collected from children in Tunisia during a four-year period: Detection of the norovirus variant GGII.4 Hunter as early as January 2003. J Clin Microbiol 47:421-429.
44. Siebenga JJ, Vennema H, Renckens B, de Bruin E, van der Veer B, Siezen RJ, Koopmans M. 2007. Epochal evolution of GGII.4 norovirus capsid proteins from 1995 to 2006. J Virol 81:9932-9941.
45. Svraka S, Vennema H, van der Veer B, Hedlund KO, Thorhagen M, Siebenga J, Duizer E, Koopmans M. 2010. Epidemiology and genotype analysis of emerging sapovirus-associated infections across Europe. J Clin Microbiol 48:2191-2198.
46. Teunis PF, Moe CL, Liu P, Miller SE, Lindesmith L, Baric RS, Le Pendu J, Calderon RL. 2008. Norwalk virus: How infectious is it? J Med Virol 80:1468-1476.
47. Trang NV, Luan le T, Kim-Anh le T, Hau VT, Nhung le TH, Phasuk P, Setrabutr O, Shirley H, Vinje J, Anh DD, Mason CJ. 2012. Detection and molecular characterization of noroviruses and sapoviruses in children admitted to hospital with acute gastroenteritis in Vietnam. J Med Virol 84:290-297.
48. Trujillo AA, McCaustland KA, Zheng DP, Hadley LA, Vaughn G, Adams SM, Ando T, Glass RI, Monroe SS. 2006. Use of TaqMan real-time reverse transcription-PCR for rapid detection, quantification, and typing of norovirus. J Clin Microbiol 44:1405-1412.
49. Wingfield T, Gallimore CI, Xerry J, Gray JJ, Klapper P, Guiver M, Blanchard TJ. 2010. Chronic norovirus infection in an HIV-positive patient with persistent diarrhoea: A novel cause. J Clin Virol 49:219-222.
50. Zheng DP, Ando T, Fankhauser RL, Beard RS, Glass RI, Monroe SS. 2006. Norovirus classification and proposed strain nomenclature. Virology 346:312-323.