Quantification and genotyping of human sapoviruses in the Llobregat river catchment, Spain

Applied and Environmental Microbiology

Volumn 77, Issue 3, 2011, Pages 1111-1114

  Sano, Daisuke ^a,b   Pérez Sautu, Unai ^a   Guix, Susana ^a   Pintó, Rosa Maria ^a   Miura, Takayuki ^b   Okabe, Satoshi ^b   Bosch, Albert ^a  

^a UNIVERSITY OF BARCELONA   (Spain)

^b HOKKAIDO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

DRINKING WATER; GENOTYPING; LLOBREGAT RIVER; SEASONAL DISTRIBUTIONS; TREATED WASTEWATER;

CATCHMENTS; POTABLE WATER; WASTEWATER; WASTEWATER TREATMENT;

RUNOFF;

FRESH WATER; VIRUS RNA;

DRINKING WATER; GENOTYPE; NEW RECORD; QUANTITATIVE ANALYSIS; SAMPLING; SEASONAL VARIATION; VIRUS; WASTEWATER;

ARTICLE; CLASSIFICATION; DNA SEQUENCE; ENVIRONMENTAL MONITORING; GENETICS; GENOTYPE; HUMAN; ISOLATION AND PURIFICATION; METHODOLOGY; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; RIVER; SAPOVIRUS; SEASON; SEWAGE; SPAIN; VIROLOGY; WATER SUPPLY;

ENVIRONMENTAL MONITORING; FRESH WATER; GENOTYPE; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RIVERS; RNA, VIRAL; SAPOVIRUS; SEASONS; SEQUENCE ANALYSIS, DNA; SEWAGE; SPAIN; WASTE DISPOSAL, FLUID; WATER MICROBIOLOGY; WATER SUPPLY;

CATALONIA; JAPAN; LLOBREGAT BASIN; SPAIN;

EID: 79551478566     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.01721-10     Document Type: Article

References (24)

1. Akihara, S., et al. 2005. Identification of sapovirus infection among Japanese infants in a day care center. J. Med. Virol. 77:595-601. (Pubitemid 41609602)
2. Ćespedes, R., et al. 2005. Distribution of endocrine disruptors in Llobregat River basin (Catalonia, NE Spain). Chemosphere 61:1710-1719.
3. Costafreda, M. I., A. Bosch, and R. M. Pintó. 2006. Development, evaluation, and standardization of a real-time TaqMan reverse transcription-PCR assay for quantification of hepatitis A virus in clinical and shellfish samples. Appl. Environ. Microbiol. 72:3846-3855.
4. Fauquet, C. M., M. A. Mayo, J. Maniloff, U. Desselberger, and L. A. Ball (ed.). 2005. Eighth report of the International Committee on Taxonomy of Viruses, p. 843-851. Elsevier Academic Press, New York, NY.
5. Hansman, G. S., et al. 2007. Outbreak of gastroenteritis due to sapovirus. J. Clin. Microbiol. 45:1347-1349.
6. Hansman, G. S., et al. 2007. Sapovirus in water, Japan. Emerg. Infect. Dis. 13:133-135.
7. Hansman, G. S., et al. 2007. Human sapovirus in clams, Japan. Emerg. Infect. Dis. 13:620-622.
8. Harada, S., et al. 2009. Surveillance of pathogens in outpatients with gastroenteritis and characterization of sapovirus strains between 2002 and 2007 in Kumamoto Prefecture, Japan. J. Med. Virol. 81:1117-1127.
9. Haramoto, E., H. Katayama, K. Oguma, and S. Ohgaki. 2005. Application of cation-coated filter method to detection of noroviruses, enteroviruses, ad-enoviruses, and torque teno viruses in the Tamagawa River in Japan. Appl. Environ. Microbiol. 71:2403-2411.
10. Haramoto, E., H. Katayama, C. Phanuwan, and S. Ohgaki. 2008. Quantitative detection of sapoviruses in wastewater and river water in Japan. Lett. Appl. Microbiol. 46:408-413.
11. Haramoto, E., et al.. 2006. Seasonal profiles of human noroviruses and indicator bacteria in a wastewater treatment plant in Tokyo, Japan. Water Sci. Technol. 54:301-308.
12. Kitajima, M., et al. 2010. Detection and genetic analysis of human sapovirus in river water in Japan. Appl. Environ. Microbiol. 76:2461-2467.
13. Kiulia, N. M., et al. 2010. The detection of enteric viruses in selected urban and rural river water and sewage in Kenya, with special reference to rotavi-rus. J. Appl. Microbiol. 109:818-828.
14. Lucena, F., A. Bosch, J. Ripoll, and J. Jofre. 1988. Fecal pollution in Llobregat river: interrelationships of viral, bacterial, and physico-chemical parameters. Water Air Soil Pollut. 39:15-25.
15. Nakata, S., et al. 1983. Microtiter solid-phase radioimmunoassay for detection of human calicivirus in stools. J. Clin. Microbiol. 17:198-201.
16. Nordgren, J., A. Matussek, A. Mattsson, L. Svensson, and P.-E. Lindgren. 2009. Prevalence of norovirus and factors influencing virus concentrations during one year in a full-scale wastewater treatment plant. Water Res. 43:1117-1125.
17. Oka, T., et al. 2006. Detection of human sapovirus by real-time reverse transcription-polymerase chain reaction. J. Med. Virol. 78:1347-1353.
18. Phan, T. G., et al. 2006. Outbreak of sapovirus infection among infants and children with acute gastroenteritis in Osaka City, Japan during 2004-2005. J. Med. Virol. 78:839-846.
19. Pintó, R. M., M. I. Costafreda, and A. Bosch. 2009. Risk assessment in shellfish-borne outbreaks of hepatitis A. Appl. Environ. Microbiol. 75:7350- 7355.
20. Pusch, D., et al. 2005. Detection of enteric viruses and bacterial indicators in German environmental waters. Arch. Virol. 150:929-947.
21. Svraka, S., et al. 2010. Epidemiology and genotype analysis of emerging sapovirus-associated infections across Europe. J. Clin. Microbiol. 48:2191- 2198.
22. Ueki, Y., et al. 2010. Detection of sapovirus in oysters. Microbiol. Immunol. 54:483-486.
23. Ueki, Y., D. Sano, T. Watanabe, K. Akiyama, and T. Omura. 2005. Norovirus pathway in water environment estimated by genetic analysis of strains from patients of gastroenteritis, sewage, treated wastewater, river water and oysters. Water Res. 39:4271-4280.
24. Wu, F.-T., et al. 2008. Acute gastroenteritis caused by GI/2 sapovirus, Taiwan, 2007. Emerg. Infect. Dis. 14:1169-1171.