-
2
-
-
22144491132
-
A census of mammalian imprinting
-
DOI 10.1016/j.tig.2005.06.008, PII S0168952505001666
-
Morison IM, Ramsay JP, Spencer HG. A census of mammalian imprinting. Trends Genet 2005; 21:457-465. (Pubitemid 40981795)
-
(2005)
Trends in Genetics
, vol.21
, Issue.8
, pp. 457-465
-
-
Morison, I.M.1
Ramsay, J.P.2
Spencer, H.G.3
-
3
-
-
34848911647
-
DNA methylation: The nuts and bolts of repression
-
DOI 10.1002/jcp.21224
-
Miranda TB, Jones PA. DNA methylation: the nuts and bolts of repression. J Cell Physiol 2007; 213:384-390. (Pubitemid 47509717)
-
(2007)
Journal of Cellular Physiology
, vol.213
, Issue.2
, pp. 384-390
-
-
Miranda, T.B.1
Jones, P.A.2
-
4
-
-
43749098985
-
DNA methylation landscapes: Provocative insights from epigenomics
-
DOI 10.1038/nrg2341, PII NRG2341
-
Suzuki MM, Bird A. DNA methylation landscapes: provocative insights from epigenomics. Nat Rev Genet 2008; 9:465-476. (Pubitemid 351693975)
-
(2008)
Nature Reviews Genetics
, vol.9
, Issue.6
, pp. 465-476
-
-
Suzuki, M.M.1
Bird, A.2
-
5
-
-
22844457491
-
DNA methylation and human disease
-
DOI 10.1038/nrg1655
-
Robertson KD. DNA methylation and human disease. Nat Rev Genet 2005; 6:597-610. (Pubitemid 41044297)
-
(2005)
Nature Reviews Genetics
, vol.6
, Issue.8
, pp. 597-610
-
-
Robertson, K.D.1
-
6
-
-
39649122136
-
Cancer epigenetics: Modifications, screening, and therapy
-
DOI 10.1146/annurev.med.59.061606.095816
-
Gal-Yam EN, Saito Y, Egger G, Jones PA. Cancer epigenetics: modifcations, screening, and therapy. Annu Rev Med 2008; 59:267-280. (Pubitemid 351287937)
-
(2008)
Annual Review of Medicine
, vol.59
, pp. 267-280
-
-
Gal-Yam, E.N.1
Saito, Y.2
Egger, G.3
Jones, P.A.4
-
7
-
-
45449114804
-
The Colorful History of Active DNA Demethylation
-
DOI 10.1016/j.cell.2008.06.009, PII S0092867408007617
-
Ooi SK, Bestor TH. The colorful history of active DNA dem-ethylation. Cell 2008; 133:1145-1148. (Pubitemid 351852922)
-
(2008)
Cell
, vol.133
, Issue.7
, pp. 1145-1148
-
-
Ooi, S.K.T.1
Bestor, T.H.2
-
8
-
-
77956095231
-
Active DNA demethylation: Many roads lead to Rome
-
Wu SC, Zhang Y. Active DNA demethylation: many roads lead to Rome. Nat Rev Mol Cell Biol 2010; 11:607-620.
-
(2010)
Nat Rev Mol Cell Biol
, vol.11
, pp. 607-620
-
-
Wu, S.C.1
Zhang, Y.2
-
9
-
-
66149146320
-
Conversion of 5-methyl-cytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
-
Tahiliani M, Koh KP, Shen Y, et al. Conversion of 5-methyl-cytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science 2009; 324:930-935.
-
(2009)
Science
, vol.324
, pp. 930-935
-
-
Tahiliani, M.1
Koh, K.P.2
Shen, Y.3
-
10
-
-
77956189495
-
Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specifcation
-
Ito S, D'Alessio AC, Taranova OV, Hong K, Sowers LC, Zhang Y. Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specifcation. Nature 2010; 466:1129-1133.
-
(2010)
Nature
, vol.466
, pp. 1129-1133
-
-
Ito, S.1
D'Alessio, A.C.2
Taranova, O.V.3
Hong, K.4
Sowers, L.C.5
Zhang, Y.6
-
11
-
-
80052495940
-
Tet-mediated formation of 5-car-boxylcytosine and its excision by TDG in mammalian DNA
-
He YF, Li BZ, Li Z, et al. Tet-mediated formation of 5-car-boxylcytosine and its excision by TDG in mammalian DNA. Science 2011; 333:1303-1307.
-
(2011)
Science
, vol.333
, pp. 1303-1307
-
-
He, Y.F.1
Li, B.Z.2
Li, Z.3
-
12
-
-
80052461558
-
Tet proteins can convert 5-methyl-cytosine to 5-formylcytosine and 5-carboxylcytosine
-
Ito S, Shen L, Dai Q, et al. Tet proteins can convert 5-methyl-cytosine to 5-formylcytosine and 5-carboxylcytosine. Science 2011; 333:1300-1303.
-
(2011)
Science
, vol.333
, pp. 1300-1303
-
-
Ito, S.1
Shen, L.2
Dai, Q.3
-
13
-
-
79960626636
-
The discovery of 5-formylcytosine in embryonic stem cell DNA
-
Pfaffeneder T, Hackner B, Truss M, et al. The discovery of 5-formylcytosine in embryonic stem cell DNA. Angew Chem Int Ed Engl 2011; 50:7008-7012.
-
(2011)
Angew Chem Int Ed Engl
, vol.50
, pp. 7008-7012
-
-
Pfaffeneder, T.1
Hackner, B.2
Truss, M.3
-
14
-
-
84862776719
-
Thymine DNA glycosylase specifically recognizes 5-carboxylcytosine- modified DNA
-
Zhang L, Lu X, Lu J, et al. Thymine DNA glycosylase specifically recognizes 5-carboxylcytosine-modified DNA. Nat Chem Biol 2012; 8:328-330.
-
(2012)
Nat Chem Biol
, vol.8
, pp. 328-330
-
-
Zhang, L.1
Lu, X.2
Lu, J.3
-
15
-
-
84862681459
-
Mechanism and stem-cell activity of 5-carboxycytosine decarboxylation determined by isotope tracing
-
Schiesser S, Hackner B, Pfaffeneder T, et al. Mechanism and stem-cell activity of 5-carboxycytosine decarboxylation determined by isotope tracing. Angew Chem Int Ed Engl 2012; 51:6516-6520.
-
(2012)
Angew Chem Int Ed Engl
, vol.51
, pp. 6516-6520
-
-
Schiesser, S.1
Hackner, B.2
Pfaffeneder, T.3
-
16
-
-
0018823799
-
Pyrimidine nucleotide biosynthesis in animals: Genes, enzymes, and regulation of UMP biosynthesis
-
Jones ME. Pyrimidine nucleotide biosynthesis in animals: genes, enzymes, and regulation of UMP biosynthesis. Annu Rev Biochem 1980; 49:253-279.
-
(1980)
Annu Rev Biochem
, vol.49
, pp. 253-279
-
-
Jones, M.E.1
-
17
-
-
33745962626
-
Pyrimidine and purine biosynthesis and degradation in plants
-
DOI 10.1146/annurev.arplant.57.032905.105421
-
Zrenner R, Stitt M, Sonnewald U, Boldt R. Pyrimidine and purine biosynthesis and degradation in plants. Annu Rev Plant Biol 2006; 57:805-836. (Pubitemid 44061046)
-
(2006)
Annual Review of Plant Biology
, vol.57
, pp. 805-836
-
-
Zrenner, R.1
Stitt, M.2
Sonnewald, U.3
Boldt, R.4
-
18
-
-
84934442460
-
Purine and pyrimidine metabolism in Leishmania
-
Carter NS, Yates P, Arendt CS, Boitz JM, Ullman B. Purine and pyrimidine metabolism in Leishmania. Adv Exp Med Biol 2008; 625:141-154.
-
(2008)
Adv Exp Med Biol
, vol.625
, pp. 141-154
-
-
Carter, N.S.1
Yates, P.2
Arendt, C.S.3
Boitz, J.M.4
Ullman, B.5
-
19
-
-
0029036377
-
The catalytic mechanism and structure of thymidylate synthase
-
Carreras CW, Santi DV. The catalytic mechanism and structure of thymidylate synthase. Annu Rev Biochem 1995; 64:721-762.
-
(1995)
Annu Rev Biochem
, vol.64
, pp. 721-762
-
-
Carreras, C.W.1
Santi, D.V.2
-
20
-
-
23844445571
-
Thymidylate synthase structure, function and implication in drug discovery
-
DOI 10.2174/0929867054864868
-
Costi MP, Ferrari S, Venturelli A, Calo S, Tondi D, Barlocco D. Thymidylate synthase structure, function and implication in drug discovery. Curr Med Chem 2005; 12:2241-2258. (Pubitemid 41179710)
-
(2005)
Current Medicinal Chemistry
, vol.12
, Issue.19
, pp. 2241-2258
-
-
Costi, M.P.1
Ferrari, S.2
Venturelli, A.3
Calo, S.4
Tondi, D.5
Barlocco, D.6
-
21
-
-
73049152492
-
Utilization of radiocarbon from thymi-dine and other precursors of ribonucleic acid in Neurospora crassa
-
Fink RM, Fink K. Utilization of radiocarbon from thymi-dine and other precursors of ribonucleic acid in Neurospora crassa. J Biol Chem 1962; 237:2289-2290.
-
(1962)
J Biol Chem
, vol.237
, pp. 2289-2290
-
-
Fink, R.M.1
Fink, K.2
-
22
-
-
0014203680
-
Cofactor requirements of thymine 7-hydroxylase
-
Abbott MT, Schandl EK, Lee RF, Parker TS, Midgett RJ. Cofactor requirements of thymine 7-hydroxylase. Biochim Biophys Acta 1967; 132:525-528.
-
(1967)
Biochim Biophys Acta
, vol.132
, pp. 525-528
-
-
Abbott, M.T.1
Schandl, E.K.2
Lee, R.F.3
Parker, T.S.4
Midgett, R.J.5
-
23
-
-
0014961845
-
The enzymatic conversion of 5-formyluracil to uracil 5-carboxylic acid
-
Watanabe MS, McCroskey RP, Abbott MT. The enzymatic conversion of 5-formyluracil to uracil 5-carboxylic acid. J Biol Chem 1970; 245:2023-2026.
-
(1970)
J Biol Chem
, vol.245
, pp. 2023-2026
-
-
Watanabe, M.S.1
McCroskey, R.P.2
Abbott, M.T.3
-
24
-
-
0015239535
-
18-O studies of the 2-ketoglutarate-dependent sequential oxygenation of thy-mine to 5-carboxyuracil
-
Holme E, Lindstedt G, Lindstedt S, Tofft M. 18-O studies of the 2-ketoglutarate-dependent sequential oxygenation of thy-mine to 5-carboxyuracil. J Biol Chem 1971; 246:3314-3319.
-
(1971)
J Biol Chem
, vol.246
, pp. 3314-3319
-
-
Holme, E.1
Lindstedt, G.2
Lindstedt, S.3
Tofft, M.4
-
25
-
-
0015520589
-
Stoichiometry of the pyrimidine deoxyribonucleoside 2′-hydroxylase reaction and of the conversions of 5-hydroxym-ethyluracil to 5-formyluracil and of the latter to uracil-5-carboxylic acid
-
Liu CK, Shaffer PM, Slaughter RS, McCroskey RP, Abbott MT. Stoichiometry of the pyrimidine deoxyribonucleoside 2′-hydroxylase reaction and of the conversions of 5-hydroxym-ethyluracil to 5-formyluracil and of the latter to uracil-5-carboxylic acid. Biochemistry 1972; 11:2172-2176.
-
(1972)
Biochemistry
, vol.11
, pp. 2172-2176
-
-
Liu, C.K.1
Shaffer, P.M.2
Slaughter, R.S.3
McCroskey, R.P.4
Abbott, M.T.5
-
26
-
-
0015805627
-
Catalysis of three sequential dioxygenase reactions by thymine 7-hydroxylase
-
Liu CK, Hsu CA, Abbott MT. Catalysis of three sequential dioxygenase reactions by thymine 7-hydroxylase. Arch Bio-chem Biophys 1973; 159:180-187.
-
(1973)
Arch Bio-chem Biophys
, vol.159
, pp. 180-187
-
-
Liu, C.K.1
Hsu, C.A.2
Abbott, M.T.3
-
27
-
-
0014963063
-
The enzymatic conversion of uracil 5-carboxylic acid to uracil and carbon dioxide
-
Palmatier RD, McCroskey RP, Abbott MT. The enzymatic conversion of uracil 5-carboxylic acid to uracil and carbon dioxide. J Biol Chem 1970; 245:6706-6710.
-
(1970)
J Biol Chem
, vol.245
, pp. 6706-6710
-
-
Palmatier, R.D.1
McCroskey, R.P.2
Abbott, M.T.3
-
28
-
-
0032903934
-
Radioactivity-based and spectrophotometric assays for isoorotate decarboxylase: Identification of the thymidine salvage pathway in lower eukaryotes
-
DOI 10.1006/abio.1998.2935
-
Smiley JA, Angelot JM, Cannon RC, Marshall EM, Asch DK. Radioactivity-based and spectrophotometric assays for isooro-tate decarboxylase: identification of the thymidine salvage pathway in lower eukaryotes. Anal Biochem 1999; 266:85-92. (Pubitemid 29024611)
-
(1999)
Analytical Biochemistry
, vol.266
, Issue.1
, pp. 85-92
-
-
Smiley, J.A.1
Angelot, J.M.2
Cannon, R.C.3
Marshall, E.M.4
Asch, D.K.5
-
29
-
-
19744376088
-
Genes of the thymidine salvage pathway: Thymine-7-hydroxylase from a Rhodotorula glutinis cDNA library and iso-orotate decarboxylase from Neurospora crassa
-
DOI 10.1016/j.bbagen.2005.02.001, PII S0304416505000322
-
Smiley JA, Kundracik M, Landfried DA, Barnes Sr VR, Ax-hemi AA. Genes of the thymidine salvage pathway: thymine-7-hydroxylase from a Rhodotorula glutinis cDNA library and iso-orotate decarboxylase from Neurospora crassa. Biochim Biophys Acta 2005; 1723:256-264. (Pubitemid 40744694)
-
(2005)
Biochimica et Biophysica Acta - General Subjects
, vol.1723
, Issue.1-3
, pp. 256-264
-
-
Smiley, J.A.1
Kundracik, M.2
Landfried, D.A.3
Barnes Sr., V.R.4
Axhemi, A.A.5
-
30
-
-
70350439290
-
The crystal structure of human alpha-amino-beta-carboxy-muconate-epsilon- semialdehyde decarboxylase in complex with 1, 3-dihydroxyacetonephosphate suggests a regulatory link between NAD synthesis and glycolysis
-
Garavaglia S, Perozzi S, Galeazzi L, Raffaelli N, Rizzi M. The crystal structure of human alpha-amino-beta-carboxy-muconate-epsilon-semialdehyde decarboxylase in complex with 1, 3-dihydroxyacetonephosphate suggests a regulatory link between NAD synthesis and glycolysis. FEBS J 2009; 276:6615-6623.
-
(2009)
FEBS J
, vol.276
, pp. 6615-6623
-
-
Garavaglia, S.1
Perozzi, S.2
Galeazzi, L.3
Raffaelli, N.4
Rizzi, M.5
-
31
-
-
33748250307
-
Crystal structure of α-amino-β-carboxymuconate-ε- semialdeliyde decarboxylase: Insight into the active site and catalytic mechanism of a novel decarboxylation reaction
-
DOI 10.1021/bi060903q
-
Martynowski D, Eyobo Y, Li T, Yang K, Liu A, Zhang H. Crystal structure of alpha-amino-beta-carboxymuconate-ep-silon-semialdehyde decarboxylase: insight into the active site and catalytic mechanism of a novel decarboxylation reaction. Biochemistry 2006; 45:10412-10421. (Pubitemid 44320458)
-
(2006)
Biochemistry
, vol.45
, Issue.35
, pp. 10412-10421
-
-
Martynowski, D.1
Eyobo, Y.2
Li, T.3
Yang, K.4
Liu, A.5
Zhang, H.6
-
32
-
-
0026434561
-
Atomic structure of adenosine deaminase complexed with a transition-state analog: Understanding catalysis and immunodeficiency mutations
-
Wilson DK, Rudolph FB, Quiocho FA. Atomic structure of adenosine deaminase complexed with a transition-state analog: understanding catalysis and immunodefciency mutations. Science 1991; 252:1278-1284. (Pubitemid 21917036)
-
(1991)
Science
, vol.252
, Issue.5010
, pp. 1278-1284
-
-
Wilson, D.K.1
Rudolph, F.B.2
Quiocho, F.A.3
-
33
-
-
23244457010
-
Structural basis of compound recognition by adenosine deaminase
-
DOI 10.1021/bi050529e
-
Kinoshita T, Nakanishi I, Terasaka T, et al. Structural basis of compound recognition by adenosine deaminase. Biochemistry 2005; 44:10562-10569. (Pubitemid 41098233)
-
(2005)
Biochemistry
, vol.44
, Issue.31
, pp. 10562-10569
-
-
Kinoshita, T.1
Nakanishi, I.2
Terasaka, T.3
Kuno, M.4
Seki, N.5
Warizaya, M.6
Matsumura, H.7
Inoue, T.8
Takano, K.9
Adachi, H.10
Mori, Y.11
Fujii, T.12
-
34
-
-
0027488896
-
Cytosine deaminase. The roles of divalent metal ions in catalysis
-
Porter DJ, Austin EA. Cytosine deaminase. The roles of divalent metal ions in catalysis. J Biol Chem 1993; 268:24005-24011. (Pubitemid 23335379)
-
(1993)
Journal of Biological Chemistry
, vol.268
, Issue.32
, pp. 24005-24011
-
-
Porter, D.J.T.1
Austin, E.A.2
-
35
-
-
0036304598
-
The structure of Escherichia coli cytosine deaminase
-
DOI 10.1006/jmbi.2001.5277
-
Ireton GC, McDermott G, Black ME, Stoddard BL. The structure of Escherichia coli cytosine deaminase. J Mol Biol 2002; 315:687-697. (Pubitemid 34729319)
-
(2002)
Journal of Molecular Biology
, vol.315
, Issue.4
, pp. 687-697
-
-
Ireton, G.C.1
McDermott, G.2
Black, M.E.3
Stoddard, B.L.4
-
36
-
-
17844384785
-
Structural and catalytic diversity within the amidohydrolase superfamily
-
DOI 10.1021/bi047326v
-
Seibert CM, Raushel FM. Structural and catalytic diversity within the amidohydrolase superfamily. Biochemistry 2005; 44:6383-6391. (Pubitemid 40593789)
-
(2005)
Biochemistry
, vol.44
, Issue.17
, pp. 6383-6391
-
-
Seibert, C.M.1
Raushel, F.M.2
-
37
-
-
79951476387
-
PROPKA3: Consistent treatment of internal and surface residues in empirical pKa predictions
-
Olsson MHM, Søndergaard CR, Rostkowski M, Jensen JH. PROPKA3: consistent treatment of internal and surface residues in empirical pKa predictions. J Chem Theory Comput 2011; 7:525-537.
-
(2011)
J Chem Theory Comput
, vol.7
, pp. 525-537
-
-
Mhm, O.1
Søndergaard, C.R.2
Rostkowski, M.3
Jensen, J.H.4
-
38
-
-
0028978221
-
Reaction mechanism of L-2-haloacid dehalogenase of Pseudomonas sp. YL. Identification of Asp10 as the active site nucleo-phile by 18O incorporation experiments
-
Liu JQ, Kurihara T, Miyagi M, Esaki N, Soda K. Reaction mechanism of L-2-haloacid dehalogenase of Pseudomonas sp. YL. Identification of Asp10 as the active site nucleo-phile by 18O incorporation experiments. J Biol Chem 1995; 270:18309-18312.
-
(1995)
J Biol Chem
, vol.270
, pp. 18309-18312
-
-
Liu, J.Q.1
Kurihara, T.2
Miyagi, M.3
Esaki, N.4
Soda, K.5
-
39
-
-
0347785486
-
Heavy atom isotope effects on the reaction catalyzed by the oxalate decarboxylase from Bacillus subtilis
-
DOI 10.1021/ja0286977
-
Reinhardt LA, Svedruzic D, Chang CH, Cleland WW, Richards NGJ. Heavy atom isotope effects on the reaction catalyzed by the oxalate decarboxylase from Bacillus subtilis. J Am Chem Soc 2003; 125:1244-1252. (Pubitemid 36159835)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.5
, pp. 1244-1252
-
-
Reinhardt, L.A.1
Svedruzic, D.2
Chang, C.H.3
Cleland, W.W.4
Richards, N.G.J.5
-
40
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
DOI 10.1016/S0076-6879(97)76066-X
-
Otwinowski Z, Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 1997; 276:307-326. (Pubitemid 27085611)
-
(1997)
Methods in Enzymology
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
41
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams PD, Afonine PV, Bunkoczi G, et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr 2010; 66:213-221.
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkoczi, G.3
-
46
-
-
34548232365
-
Inference of Macromolecular Assemblies from Crystalline State
-
DOI 10.1016/j.jmb.2007.05.022, PII S0022283607006420
-
Krissinel E, Henrick K. Inference of macromolecular assemblies from crystalline state. J Mol Biol 2007; 372:774-797. (Pubitemid 47321791)
-
(2007)
Journal of Molecular Biology
, vol.372
, Issue.3
, pp. 774-797
-
-
Krissinel, E.1
Henrick, K.2
|