Probing the orientation of electrostatically immobilized cytochrome C by time of flight secondary ion mass spectrometry and sum frequency generation spectroscopy

Biointerphases

Volumn 8, Issue 1, 2013, Pages 1-8

  Baio, Joe E ^a,c   Weidner, Tobias ^a,d   Ramey, Dennis ^a   Pruzinsky, Leah ^a,b   Castner, David G ^a  

^a UNIVERSITY OF WASHINGTON   (United States)

^b University of Connecticut   (United States)

^c Oregon State University   (United States)

^d MAX PLANCK INSTITUTE FOR POLYMER RESEARCH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; AMMONIA; ELECTRODES; ELECTRON TRANSPORT PROPERTIES; INTERFEROMETRY; IONS; PORPHYRINS; PROTEINS; SECONDARY EMISSION; X RAY PHOTOELECTRON SPECTROSCOPY;

AMINO ACID RESIDUES; ELECTRODE SURFACES; ELECTRON TRANSFER RATES; INTENSITY DIFFERENCE; NEGATIVELY CHARGED SURFACES; SUM FREQUENCY GENERATION; SUM-FREQUENCY GENERATION SPECTROSCOPY; TIME OF FLIGHT SECONDARY ION MASS SPECTROMETRY;

SECONDARY ION MASS SPECTROMETRY;

CYTOCHROME C; IMMOBILIZED ENZYME;

CHEMISTRY; PROCEDURES; SECONDARY ION MASS SPECTROMETRY; SPECTROSCOPY; SURFACE PROPERTY;

CYTOCHROMES C; ENZYMES, IMMOBILIZED; SPECTROMETRY, MASS, SECONDARY ION; SPECTRUM ANALYSIS; SURFACE PROPERTIES;

EID: 84887206442     PISSN: 19348630     EISSN: 15594106     Source Type: Journal    
DOI: 10.1186/1559-4106-8-18     Document Type: Article

References (46)

1. Hardison R (1999) The evolution of hemoglobin: studies of a very ancient protein suggest that changes in gene regulation are an important part of the evolutionary story. Am Sci 87(2):126
2. Runge AF, Saavedra SS (2003) Comparison of microcontact-printed and solution-adsorbed cytochrome C films on indium tin oxide electrodes. Langmuir 19(22):9418-9424
3. Willit JL, Bowden EF (1987) Determination of unimolecular electron-transfer rate constants for strongly adsorbed cytochrome-c on tin oxide electrodes. J Electroanal Chem 221(1-2):265-274
4. Willit JL, Bowden EF (1990) Adsorption and redox thermodynamics of strongly adsorbed cytochrome-c on tin oxide electrodes. J Phys Chem 94(21):8241-8246
5. Tarlov MJ, Bowden EF (1991) Electron-transfer reaction of cytochrome-c adsorbed on carboxylic-acid terminated alkanethiol monolayer electrodes. J Am Chem Soc 113(5):1847-1849
6. Xu JS, Bowden EF (2006) Determination of the orientation of adsorbed cytochrome c on carboxyalkanethiol self-assembled monolayers by in situ differential modification. J Am Chem Soc 128(21):6813-6822
7. Chen XX, Ferrigno R, Yang J, Whitesides GA (2002) Redox properties of cytochrome c adsorbed on self-assembled monolayers: A probe for protein conformation and orientation. Langmuir 18(18):7009-7015
8. Georg S, Kabuss J, Weidinger IM, Murgida DH, Hildebrandt P, Knorr A, Richter M (2010) Distance-dependent electron transfer rate of immobilized redox proteins: A statistical physics approach. Phys. Rev. E 81(4):046101
9. Lee JE, Saavedra SS (1996) Molecular orientation in heme protein films adsorbed to hydrophilic and hydrophobic glass surfaces. Langmuir 12(16):4025-4032
10. Edmiston PL, Saavedra SS (1998) Molecular orientation distributions in protein films. 4. A multilayer composed of yeast cytochrome c bound through an intermediate streptavidin layer to a planar supported phospholipid bilayer. J Am Chem Soc 120(8):1665-1671
11. Edmiston PL, Saavedra SS (1998) Molecular orientation distributions in protein films: III. Yeast cytochrome c immobilized on pyridyl disulfide-capped phospholipid bilayers. Biophys J 74(2):999-1006
12. Wood LL, Cheng SS, Edmiston PL, Saavedra SS (1997) Molecular orientation distributions in protein films.2. Site-directed immobilization of yeast cytochrome c on thiol-capped, self-assembled monolayers. J Am Chem Soc 119(3):571-576
13. Walker DS, Hellinga HW, Saavedra SS, Reichert WM (1993) Integrated optical wave-guide attenuated total-reflection spectrometry and resonance raman-spectroscopy of adsorbed cytochrome-c. J Phys Chem 97(39):10217-10222
14. Du YZ, Saavedra SS (2003) Molecular orientation distributions in protein films. V. Cytochrome c adsorbed to a sulfonate-terminated, self-assembled monolayer. Langmuir 19(16):6443-6448
15. Edmiston PL, Lee JE, Cheng SS, Saavedra SS (1997) Molecular orientation distributions in protein films.1. Cytochrome c adsorbed to substrates of variable surface chemistry. J Am Chem Soc 119(3):560-570
16. Banci L, Bertini I, Gray HB, Luchinat C, Reddig T, Rosato A, Turano P (1997) Solution structure of oxidized horse heart cytochrome c. Biochemistry 36(32):9867-9877
17. Bushnell GW, Louie GV, Brayer GD (1990) High-resolution 3-dimensional structure of horse heart cytochrome-c. J Mol Biol 214(2):585-595
18. Baio J, Cheng F, Ratner D, Stayton P, Castner D (2011) Probing orientation of immobilized humanized anti-lysozyme variable fragment by time-of-flight secondary-ion mass spectrometry. J Biomed Mater Res A 97A(1):1-7
19. Wagner MS, Castner DG (2001) Characterization of Adsorbed Protein Films by ToF SIMS with PCA. Langmuir 17:4649-4660
20. Wagner MS, Castner DG (2004) Analysis of adsorbed proteins by static time-of-flight secondary ion mass spectrometry. Appl Surf Sci 231:366-376
21. Wagner MS, Horbett TA, Castner DG (2003) Characterizing multicomponent adsorbed protein films using electron spectroscopy for chemical analysis, time-of-flight secondary ion mass spectrometry, and radiolabeling: capabilities and limitations. Biomaterials 24(11):1897-1908
22. Baio JE, Weidner T, Samuel NT, McCrea K, Baugh L, Stayton PS, Castner DG (2010) Multi-technique Characterization of Adsorbed Peptide and Protein Orientation: LK310 and Protein G B1. J Vac Sci Technol B 28(4):C5D1-C5D8
23. Xia N, May CJ, McArthur SL, Castner DG (2002) Time-of-flight secondary ion mass spectrometry analysis of conformational changes in adsorbed protein films. Langmuir 18(10):4090-4097
24. Xia N, Castner DG (2003) Preserving the structure of adsorbed protein films for time-of-flight secondary ion mass spectrometry analysis. J Biomed Mater Res A 67A(1):179-190
25. Michel R, Pasche S, Textor M, Castner DG (2005) Influence of PEG architecture on protein adsorption and conformation. Langmuir 21(26):12327-12332
26. Lhoest JB, Detrait E, van den Bosch De Aguilar P, Bertrand P (1998) Fibronectin adsorption, conformation, and orientation on polystyrene substrates studied by radiolabeling, XPS, and ToF SIMS. J Biomed Mater Res 41(1):95-103
27. Lhoest JB, Wagner MS, Tidwell CD, Castner DG (2001) Characterization of adsorbed protein films by time of flight secondary ion mass spectrometry. J Biomed Mater Res 57(3):432-440
28. Wang H, Castner DG, Ratner BD, Jiang SY (2004) Probing the orientation of surface-immobilized immunoglobulin G by time-of-flight secondary ion mass spectrometry. Langmuir 20(5):1877-1887
29. Baio JE, Weidner T, Baugh L, Gamble LJ, Stayton PS, Castner DG (2012) Probing the orientation of electrostatically immobilized protein G B1 by iime of flight secondary ion spectrometry, sum frequency generation and near-edge X-Ray absorption fine structure spectroscopy. Langmuir 28(4):2107-2112
30. Baugh L, Nguyen P-C, Baio JE, Weidner T, Gamble LJ, Castner DG, Stayton PS (2010) Probing the Orientation of Surface-Immobilized Protein G B1 using ToF-SIMS, Sum Frequency Generation, and NEXAFS Spectroscopy. Langmuir 26(21):16434-16441
31. Chen XY, Wang J, Sniadecki JJ, Even MA, Chen Z (2005) Probing alpha-helical and beta-sheet structures of peptides at solid/liquid interfaces with SFG. Langmuir 21(7):2662-2664
32. Chen XY, Clarke ML, Wang J, Chen Z (2005) Sum frequency generation vibrational spectroscopy studies on molecular conformation and orientation of biological molecules at interfaces. International Journal of Modern Physics B 19:691-713
33. Wang J, Clarke ML, Chen XY, Even MA, Johnson WC, Chen Z (2005) Molecular studies on protein conformations at polymer/liquid interfaces using sum frequency generation vibrational spectroscopy. Surf Sci 587(1-2):1-11
34. Wang J, Chen XY, Clarke ML, Chen Z (2005) Detection of chiral sum frequency generation vibrational spectra of proteins and peptides at interfaces in situ. Proc Natl Acad Sci USA 102(14):4978-4983
35. Mermut O, Phillips DC, York RL, McCrea KR, Ward RS, Somorjai GA (2006) In situ adsorption studies of a 14-amino acid leucine-lysine peptide onto hydrophobic polystyrene and hydrophilic silica surfaces using quartz crystal microbalance, atomic force microscopy, and sum frequency generation vibrational spectroscopy. J Am Chem Soc 128(11):3598-3607
36. Weidner T, Samuel NT, McCrea K, Gamble LJ, Ward RS, Castner DG (2010) Assembly and structure of α-helical peptide films on hydrophobic fluorocarbon surfaces. Biointerphases 5(9):9-16
37. Weidner T, Breen NF, Li K, Drobny GP, Castner DG (2010) Sum frequency generation and solid-state NMR study of the structure, orientation, and dynamics of polystyrene-adsorbed peptides. Proc Natl Acad Sci 107(30):13288-13293
38. Weidner T, Apte JS, Gamble LJ, Castner DG (2010) Probing orientation and conformation of α-helix and β-strand model peptides on self-assembled monolayers using sum frequency generation and NEXAFS spectroscopies. Langmuir 26(5):3433-3440
39. Nguyen K, King J, Chen Z (2010) Orientation determination of interfacial beta-sheet structures in situ. J Phys Chem B 114(25):8291-8300
40. Nguyen KT, Soong R, Im SC, Waskell L, Ramamoorthy A, Chen Z (2010) Probing the spontaneous membrane insertion of a tail-anchored membrane protein by sum frequency generation spectroscopy. J Am Chem Soc 132(43):15112-15115
41. Baio JE, Weidner T, Brison J, Graham DJ, Gamble LJ, Castner DG (2009) Amine terminated SAMs: Investigating why oxygen is present in these films. Journal of Electron Spectroscopy and Related Phenomena 172(1-3):2-8
42. Fears KP, Creager SE, Latour RA (2008) Determination of the surface pK of carboxylic- and amine-terminated alkanethiols using surface plasmon resonance spectroscopy. Langmuir 24(3):837-843
43. Van Gelder BF, Slater EC (1962) The extinction coefficient of cytochrome c. Biochim Biophys Acta 58(3):593-595
44. Moore FG, Becraft KA, Richmond GL (2002) Challenges in interpreting vibrational sum frequency spectra: Deconvoluting spectral features as demonstrated in the calcium fluoride-water-sodium dodecylsulfate system. Appl Spectrosc 56(12):1575-1578
45. Mantus DS, Ratner BD, Carlson BA, Moulder JF (1993) Static Secondary-Ion Mass-Spectrometry of Adsorbed Proteins. Anal Chem 65(10):1431-1438
46. Xia N (2003) Time-of-flight secondary ion mass spectrometry (ToF-SIMS) characterization of conformation and orientation of adsorbed protein films. University of Washington, Seattle