-
1
-
-
0016355478
-
A new look at the statistical model identification
-
Akaike, H. 1974. A new look at the statistical model identification. IEEE Trans. Autom. Contr. 19:716-723.
-
(1974)
IEEE Trans. Autom. Contr.
, vol.19
, pp. 716-723
-
-
Akaike, H.1
-
2
-
-
69449089577
-
Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates
-
Alfaro, M. E., F. Santini, C. Brock, H. Alamillo, A. Dornburg, D. L. Rabosky, G. Carnevale, and L. J. Harmon 2009. Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates. Proc. Natl. Acad. Sci. USA 106:13410-13414.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 13410-13414
-
-
Alfaro, M.E.1
Santini, F.2
Brock, C.3
Alamillo, H.4
Dornburg, A.5
Rabosky, D.L.6
Carnevale, G.7
Harmon, L.J.8
-
3
-
-
70350218974
-
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III
-
Angiosperm Phylogeny Group
-
Angiosperm Phylogeny Group. 2009. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. Bot. J. Linnean Soc. 161:105-121.
-
(2009)
Bot. J. Linnean Soc.
, vol.161
, pp. 105-121
-
-
-
4
-
-
68049124779
-
Nuclear and chloroplast DNA-based phylogenies of Chrysanthemoides Tourn. ex Medik. (Calenduleae; Asteraceae) reveal extensive incongruence and generic paraphyly, but support the recognition of infraspecific taxa in C. monilifera
-
Barker, N. P., S. Howis, B. Nordenstam, M. Källersjö, P. Eldenäs, C. Griffion, and H. P. Linder 2009. Nuclear and chloroplast DNA-based phylogenies of Chrysanthemoides Tourn. ex Medik. (Calenduleae; Asteraceae) reveal extensive incongruence and generic paraphyly, but support the recognition of infraspecific taxa in C. monilifera. South Afr. J. Bot. 75:560-572.
-
(2009)
South Afr. J. Bot.
, vol.75
, pp. 560-572
-
-
Barker, N.P.1
Howis, S.2
Nordenstam, B.3
Källersjö, M.4
Eldenäs, P.5
Griffion, C.6
Linder, H.P.7
-
5
-
-
84874401849
-
Synthesizing phylogenetic knowledge for ecological research
-
Beaulieu, J. M., R. H. Ree, J. Cavender-Bares, G. D. Weiblen, and M. J. Donoghue 2012a. Synthesizing phylogenetic knowledge for ecological research. Ecology 93:S4-S13.
-
(2012)
Ecology
, vol.93
-
-
Beaulieu, J.M.1
Ree, R.H.2
Cavender-Bares, J.3
Weiblen, G.D.4
Donoghue, M.J.5
-
6
-
-
84864320749
-
Modeling stabilizing selection: expanding the Ornstein-Uhlenbeck model of adaptive evolution
-
Beaulieu, J. M., D.-C. Jhwueng, C. Boettiger, B. C. O'Meara 2012b. Modeling stabilizing selection: expanding the Ornstein-Uhlenbeck model of adaptive evolution. Evolution 66:2369-2383.
-
(2012)
Evolution
, vol.66
, pp. 2369-2383
-
-
Beaulieu, J.M.1
Jhwueng, D.-C.2
Boettiger, C.3
O'Meara, B.C.4
-
7
-
-
84882742839
-
Identifying hidden rate changes in the evolution of a binary morphological character: the evolution of plant habit in campanulid angiosperms
-
doi:10.1093/sysbio/syt034
-
Beaulieu, J. M., B. C. O'Meara, and M. J. Donoghue 2013a. Identifying hidden rate changes in the evolution of a binary morphological character: the evolution of plant habit in campanulid angiosperms. Syst. Biol. doi:10.1093/sysbio/syt034.
-
(2013)
Syst. Biol
-
-
Beaulieu, J.M.1
O'Meara, B.C.2
Donoghue, M.J.3
-
8
-
-
84875845687
-
A Southern Hemisphere origin for campanulid angiosperms, with traces of the break-up of Gondwana
-
Beaulieu, J. M., D. C. Tank, and M. J. Donoghue 2013b. A Southern Hemisphere origin for campanulid angiosperms, with traces of the break-up of Gondwana. BMC Evol. Biol. 13:80
-
(2013)
BMC Evol. Biol
, vol.13
, pp. 80
-
-
Beaulieu, J.M.1
Tank, D.C.2
Donoghue, M.J.3
-
9
-
-
0027011759
-
Evolution of fruit characters and dispersal modes in the tropical family Rubiaceae
-
Bremer, B., and O. Eriksson 1992. Evolution of fruit characters and dispersal modes in the tropical family Rubiaceae. Biological Journal of the Linnean Society 47:79-95.
-
(1992)
Biological Journal of the Linnean Society
, vol.47
, pp. 79-95
-
-
Bremer, B.1
Eriksson, O.2
-
10
-
-
37849053471
-
Estimating divergence times in large phylogenetic trees
-
Britton, T., C. J. Anderson, D. Jacquet, S. Lundqvist, and K. Bremer 2007. Estimating divergence times in large phylogenetic trees. Syst. Biol. 56:741-752.
-
(2007)
Syst. Biol
, vol.56
, pp. 741-752
-
-
Britton, T.1
Anderson, C.J.2
Jacquet, D.3
Lundqvist, S.4
Bremer, K.5
-
11
-
-
79951569533
-
Genome-scale phylogenetics: Inferring the plant Tree of Life from 18,896 gene trees
-
Burleigh, J. G., M. S. Bansal, O. Eulenstein, S. Hartmann, A. Wehe, and T. J. Vision 2011. Genome-scale phylogenetics: Inferring the plant Tree of Life from 18, 896 gene trees. Syst. Biol. 60:117-125.
-
(2011)
Syst. Biol.
, vol.60
, pp. 117-125
-
-
Burleigh, J.G.1
Bansal, M.S.2
Eulenstein, O.3
Hartmann, S.4
Wehe, A.5
Vision, T.J.6
-
12
-
-
84886287086
-
Diversification of CYCLOIDEA-like genes in Dipsacaceae (Dipsacales): implications for the evolution of capitulum inflorescences
-
Carlson, S. E., D. G. Howarth, and M. J. Donoghue 2011. Diversification of CYCLOIDEA-like genes in Dipsacaceae (Dipsacales): implications for the evolution of capitulum inflorescences. BMC Evol. Biol. 6:315.
-
(2011)
BMC Evol. Biol.
, vol.6
, pp. 315
-
-
Carlson, S.E.1
Howarth, D.G.2
Donoghue, M.J.3
-
13
-
-
0036964964
-
Contingent predictability in evolution: Key traits and diversification
-
de Queiroz, A. 2002. Contingent predictability in evolution: Key traits and diversification. Syst. Biol. 51:917-929.
-
(2002)
Syst. Biol.
, vol.51
, pp. 917-929
-
-
de Queiroz, A.1
-
14
-
-
0032813080
-
Phylogenetic analysis of trait evolution and species diversity variation among angiosperm families
-
Dodd, M. E., J. Silvertown, and M. W. Chase 1999. Phylogenetic analysis of trait evolution and species diversity variation among angiosperm families. Evolution 53:732-744.
-
(1999)
Evolution
, vol.53
, pp. 732-744
-
-
Dodd, M.E.1
Silvertown, J.2
Chase, M.W.3
-
15
-
-
21344456730
-
Key innovations, convergence, and success: macroevolutionary lessons from plant phylogeny
-
Donoghue, M. J. 2005. Key innovations, convergence, and success: macroevolutionary lessons from plant phylogeny. Paleobiology 31:77-93.
-
(2005)
Paleobiology
, vol.31
, pp. 77-93
-
-
Donoghue, M.J.1
-
17
-
-
0026289973
-
Fruit characteristics, life forms, and species richness in the plant family Rubiaceae
-
Eriksson, O., and B. Bremer 1991. Fruit characteristics, life forms, and species richness in the plant family Rubiaceae. Am. Nat. 138:751-761.
-
(1991)
Am. Nat.
, vol.138
, pp. 751-761
-
-
Eriksson, O.1
Bremer, B.2
-
18
-
-
84871008957
-
Diversitree: comparative phylogenetic analyses of diversification in R
-
FitzJohn, R. G. 2012. Diversitree: comparative phylogenetic analyses of diversification in R. Methods Ecol. Evol. 3:1084-1092.
-
(2012)
Methods Ecol. Evol.
, vol.3
, pp. 1084-1092
-
-
FitzJohn, R.G.1
-
19
-
-
72849125317
-
Estimating trait-dependent speciation and extinction rates from incompletely resolved phylogenies
-
FitzJohn, R. G., W. P. Maddison, and S. P. Otto 2009. Estimating trait-dependent speciation and extinction rates from incompletely resolved phylogenies. Syst. Biol. 58:595-611.
-
(2009)
Syst. Biol.
, vol.58
, pp. 595-611
-
-
FitzJohn, R.G.1
Maddison, W.P.2
Otto, S.P.3
-
20
-
-
66649120526
-
Phylogenetic analysis of 73,060 taxa corroborates major eukaryotic groups
-
Goloboff, P. A., S. A. Catalano, J. M. Mirande, C. A. Szumik, J. S. Arias, M. Källersjö, and J. S. Farris 2009. Phylogenetic analysis of 73, 060 taxa corroborates major eukaryotic groups. Cladistics 25:211-230.
-
(2009)
Cladistics
, vol.25
, pp. 211-230
-
-
Goloboff, P.A.1
Catalano, S.A.2
Mirande, J.M.3
Szumik, C.A.4
Arias, J.S.5
Källersjö, M.6
Farris, J.S.7
-
21
-
-
0024921138
-
Seed dispersal by animals: a role in angiosperm diversification
-
Herrera, C. 1989. Seed dispersal by animals: a role in angiosperm diversification? Am. Nat. 133:309-322.
-
(1989)
Am. Nat.
, vol.133
, pp. 309-322
-
-
Herrera, C.1
-
22
-
-
77951158410
-
Fruits and seeds of the Valeriana clade (Dipsacales): diversity and evolution
-
Jacobs, B., C. Bell, and E. Smets 2010. Fruits and seeds of the Valeriana clade (Dipsacales): diversity and evolution. Intl. J. Plant Sci. 171:421-434.
-
(2010)
Intl. J. Plant Sci.
, vol.171
, pp. 421-434
-
-
Jacobs, B.1
Bell, C.2
Smets, E.3
-
23
-
-
37649007931
-
Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
-
Jansen, R. K., Z. Cai, L. A. Raubeson, H. Daniell, C. W. dePamphilis, J. Leebens-Mack, K. F. Müller, M. Guisinger-Bellian, R. C. Haberle, A. K. Hansen, et al. 2007. Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns. Proc. Natl. Acad. Sci. USA 104:19369-19374.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 19369-19374
-
-
Jansen, R.K.1
Cai, Z.2
Raubeson, L.A.3
Daniell, H.4
dePamphilis, C.W.5
Leebens-Mack, J.6
Müller, K.F.7
Guisinger-Bellian, M.8
Haberle, R.C.9
Hansen, A.K.10
-
24
-
-
33750588239
-
Confounding asymmetries in evolutionary diversification and character change
-
Maddison, W. P. 2006. Confounding asymmetries in evolutionary diversification and character change. Evolution 60:1743-1746.
-
(2006)
Evolution
, vol.60
, pp. 1743-1746
-
-
Maddison, W.P.1
-
25
-
-
34548657597
-
Estimating a binary character's effect on speciation and extinction
-
Maddison, W. P., P. E. Midford, and S. P. Otto 2007. Estimating a binary character's effect on speciation and extinction. Syst. Biol. 56:701-710.
-
(2007)
Syst. Biol.
, vol.56
, pp. 701-710
-
-
Maddison, W.P.1
Midford, P.E.2
Otto, S.P.3
-
26
-
-
34347373517
-
Correlates of diversification in the plant clade Dipsacales: geographic movement and evolutionary innovations
-
Moore, B. R., and M. J. Donoghue 2007. Correlates of diversification in the plant clade Dipsacales: geographic movement and evolutionary innovations. Am. Nat. 170:S28-S55.
-
(2007)
Am. Nat.
, vol.170
-
-
Moore, B.R.1
Donoghue, M.J.2
-
27
-
-
63149188584
-
A Bayesian approach for evaluating the impact of historical events on rates of diversification
-
Moore, B. R., and M. J. Donoghue 2009. A Bayesian approach for evaluating the impact of historical events on rates of diversification. Proc. Natl. Acad. Sci. USA 106:4307-4312.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 4307-4312
-
-
Moore, B.R.1
Donoghue, M.J.2
-
28
-
-
14844340332
-
Detecting diversification rate variation in supertrees
-
O. R. P. Bininda-Emonds, Kluwer Academic, Dordrecht, The Netherlands
-
Moore, B. R., K. M. A. Chan, and M. J. Donoghue 2004. Detecting diversification rate variation in supertrees. Pp. 487-533 in O. R. P. Bininda-Emonds, Phylogenetic supertrees: combining information to reveal the tree of life. Kluwer Academic, Dordrecht, The Netherlands.
-
(2004)
Phylogenetic supertrees: combining information to reveal the tree of life
, pp. 487-533
-
-
Moore, B.R.1
Chan, K.M.A.2
Donoghue, M.J.3
-
29
-
-
37549054628
-
Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms
-
Moore, M. J., C. D. Bell, P. S. Soltis, and D. E. Soltis 2007. Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms. Proc. Natl. Acad. Sci. USA 104:19363-19368.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 19363-19368
-
-
Moore, M.J.1
Bell, C.D.2
Soltis, P.S.3
Soltis, D.E.4
-
30
-
-
0028097770
-
Detecting correlated evolution on phylogenies: a general method for the comparative analysis of discrete characters
-
Pagel, M. 1994. Detecting correlated evolution on phylogenies: a general method for the comparative analysis of discrete characters. Proc. R. Soc. B 255:37-45.
-
(1994)
Proc. R. Soc. B
, vol.255
, pp. 37-45
-
-
Pagel, M.1
-
31
-
-
43049100301
-
The value of sampling anomalous taxa in phylogenetic studies: major clade of the Asteraceae revealed
-
Panero, J. L., and V. A. Funk 2008. The value of sampling anomalous taxa in phylogenetic studies: major clade of the Asteraceae revealed. Mol. Phylogenet. Evol. 47:757-782.
-
(2008)
Mol. Phylogenet. Evol.
, vol.47
, pp. 757-782
-
-
Panero, J.L.1
Funk, V.A.2
-
32
-
-
67649450129
-
Character combinations, convergence and diversification in ectoparasitic arthropods
-
Poulin, R. 2009. Character combinations, convergence and diversification in ectoparasitic arthropods. Intl. J. Parasitol. 39:1165-1171.
-
(2009)
Intl. J. Parasitol.
, vol.39
, pp. 1165-1171
-
-
Poulin, R.1
-
33
-
-
0034117082
-
A fast algorithm for joint reconstruction of ancestral amino-acid sequences
-
Pupko, T., I. Pe'er, R. Shamir, and D. Graur 2000. A fast algorithm for joint reconstruction of ancestral amino-acid sequences. Mol. Biol. Evol. 17:890-896.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 890-896
-
-
Pupko, T.1
Pe'er, I.2
Shamir, R.3
Graur, D.4
-
34
-
-
0036677932
-
A branch-and-bound algorithm for the inference of ancestral amino-acid sequences when the replacement rate varies among sites: application to the evolution of five gene families
-
Pupko, T., I. Pe'er, D. Graur, M. Hasegawa, and N Friedman 2002. A branch-and-bound algorithm for the inference of ancestral amino-acid sequences when the replacement rate varies among sites: application to the evolution of five gene families. Bioinformatics 18:1116-1123.
-
(2002)
Bioinformatics
, vol.18
, pp. 1116-1123
-
-
Pupko, T.1
Pe'er, I.2
Graur, D.3
Hasegawa, M.4
Friedman, N.5
-
35
-
-
77953910538
-
Extinction rates should not be estimated from molecular phylogenies
-
Rabosky, D. L. 2010. Extinction rates should not be estimated from molecular phylogenies. Evolution 64:1816-1824.
-
(2010)
Evolution
, vol.64
, pp. 1816-1824
-
-
Rabosky, D.L.1
-
36
-
-
0028590655
-
Species richness within families of flowering plants
-
Ricklefs, R. E., and S. S. Renner .1994. Species richness within families of flowering plants. Evolution 48:1619-1636.
-
(1994)
Evolution
, vol.48
, pp. 1619-1636
-
-
Ricklefs, R.E.1
Renner, S.S.2
-
37
-
-
45849099814
-
The PhyLoTA browser: processing GenBank for molecular phylogenetics research
-
Sanderson, M. J., D. Boss, D. Chen, K. A. Cranston, and A. Wehe 2008. The PhyLoTA browser: processing GenBank for molecular phylogenetics research. Syst. Biol. 57:335-346.
-
(2008)
Syst. Biol.
, vol.57
, pp. 335-346
-
-
Sanderson, M.J.1
Boss, D.2
Chen, D.3
Cranston, K.A.4
Wehe, A.5
-
38
-
-
0036793586
-
Genetic identification and genomic organization of factors affecting fruit texture
-
Seymour, G. B., K. Manning, E. M. Eriksson, A. H. Popovich, and G. J. King 2002. Genetic identification and genomic organization of factors affecting fruit texture. J. Exp. Bot. 53:2065-2071.
-
(2002)
J. Exp. Bot.
, vol.53
, pp. 2065-2071
-
-
Seymour, G.B.1
Manning, K.2
Eriksson, E.M.3
Popovich, A.H.4
King, G.J.5
-
39
-
-
0034967382
-
High species diversity in fleshy-fruited tropical understory plants
-
Smith, J. F. 2001. High species diversity in fleshy-fruited tropical understory plants. Am. Nat. 157:646-653.
-
(2001)
Am. Nat.
, vol.157
, pp. 646-653
-
-
Smith, J.F.1
-
40
-
-
60849123934
-
Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches
-
Smith, S. A., J. M. Beaulieu, and M. J. Donoghue 2009. Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches. BMC Evol. Biol. 9:37.
-
(2009)
BMC Evol. Biol.
, vol.9
, pp. 37
-
-
Smith, S.A.1
Beaulieu, J.M.2
Donoghue, M.J.3
-
41
-
-
79952762847
-
Understanding angiosperm diversification using small and large phylogenetic trees
-
Smith, S. A., J. M. Beaulieu, A. Stamatakis, and M. J. Donoghue 2011. Understanding angiosperm diversification using small and large phylogenetic trees. Am. J. Bot. 98:404-414.
-
(2011)
Am. J. Bot.
, vol.98
, pp. 404-414
-
-
Smith, S.A.1
Beaulieu, J.M.2
Stamatakis, A.3
Donoghue, M.J.4
-
42
-
-
84863337944
-
Angiosperm phylogeny: 17 genes, 640 taxa
-
Soltis, D. E., S. A. Smith, N. Cellinese, K. J. Wurdack, D. C. Tank, S. F. Brockington, N. F. Refulio-Rodriguez, J. B. Walker, M. J. Moore, B. S. Carlsward, et al. 2011. Angiosperm phylogeny: 17 genes, 640 taxa. Am. J. Bot. 98:704-730.
-
(2011)
Am. J. Bot.
, vol.98
, pp. 704-730
-
-
Soltis, D.E.1
Smith, S.A.2
Cellinese, N.3
Wurdack, K.J.4
Tank, D.C.5
Brockington, S.F.6
Refulio-Rodriguez, N.F.7
Walker, J.B.8
Moore, M.J.9
Carlsward, B.S.10
-
44
-
-
0004098021
-
Angiosperm phylogeny website
-
Version 12, July 2012. Available via
-
Stevens, P. F. 2012. Angiosperm phylogeny website. Version 12, July 2012. Available via http://www.mobot.org/MOBOT/research/APweb/.
-
(2012)
-
-
Stevens, P.F.1
-
45
-
-
77954488234
-
Phylogeny and phylogenetic nomenclature of the Campanulidae based on an expanded sample of genes and taxa
-
Tank, D. C., and M. J. Donoghue 2010. Phylogeny and phylogenetic nomenclature of the Campanulidae based on an expanded sample of genes and taxa. Syst. Bot. 35:425-441.
-
(2010)
Syst. Bot.
, vol.35
, pp. 425-441
-
-
Tank, D.C.1
Donoghue, M.J.2
-
46
-
-
0029110497
-
Angiosperm growth habit, dispersal and diversification reconsidered
-
Tiffney, B. H., and S. J. Mazer 1995. Angiosperm growth habit, dispersal and diversification reconsidered. Evol. Ecol. 9:93-117.
-
(1995)
Evol. Ecol.
, vol.9
, pp. 93-117
-
-
Tiffney, B.H.1
Mazer, S.J.2
-
47
-
-
2342452552
-
The role of diversification in causing the correlates of dioecy
-
Vamosi, J. C., and S. M. Vamosi 2004. The role of diversification in causing the correlates of dioecy. Evolution 58:723-731.
-
(2004)
Evolution
, vol.58
, pp. 723-731
-
-
Vamosi, J.C.1
Vamosi, S.M.2
-
48
-
-
62649125150
-
Rosid radiation and the rapid rise of angiosperm-dominated forests
-
Wang H., M. J. Moore, P. S. Soltis, C. D. Bell, S. F. Brockington, R. Alexandre R ., C. C. Davis, M. Latvis, S. R. Manchester, and D. E. Soltis 2009. Rosid radiation and the rapid rise of angiosperm-dominated forests. Proc. Natl. Acad. USA 10:3853-3858.
-
(2009)
Proc. Natl. Acad. USA
, vol.10
, pp. 3853-3858
-
-
Wang, H.1
Moore, M.J.2
Soltis, P.S.3
Bell, C.D.4
Brockington, S.F.5
Alexandre, R.R.6
Davis, C.C.7
Latvis, M.8
Manchester, S.R.9
Soltis, D.E.10
-
49
-
-
79251508346
-
Estimating diversification rates: how useful are divergence times?
-
Wertheim, J. O., and M. J. Sanderson 2011. Estimating diversification rates: how useful are divergence times? Evolution 65:309-320.
-
(2011)
Evolution
, vol.65
, pp. 309-320
-
-
Wertheim, J.O.1
Sanderson, M.J.2
|