-
1
-
-
0037393246
-
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II
-
APG (Angiosperm Phylogeny Group)
-
APG (Angiosperm Phylogeny Group), 2003. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II. Bot. J. Linn. Soc. 141, 399 436.
-
(2003)
Bot. J. Linn. Soc.
, vol.141
, pp. 399-436
-
-
-
2
-
-
3343014559
-
Relationships of endemic African mammals and their fossil relatives based on morphological and molecular evidence
-
Asher, R., Novacek, M., Geisler, J., 2003. Relationships of endemic African mammals and their fossil relatives based on morphological and molecular evidence. J. Mammal. Evol. 10, 131 194.
-
(2003)
J. Mammal. Evol.
, vol.10
, pp. 131-194
-
-
Asher, R.1
Novacek, M.2
Geisler, J.3
-
3
-
-
0034602344
-
A kingdom-level phylogeny of eukaryotes based on combined protein data
-
Baldauf, S., Roger, A., Wenk-Siefert, I., Doolittle, W., 2000. A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 290, 972 977.
-
(2000)
Science
, vol.290
, pp. 972-977
-
-
Baldauf, S.1
Roger, A.2
Wenk-Siefert, I.3
Doolittle, W.4
-
4
-
-
0037022379
-
The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba
-
Bapteste, E., Brinkmann, H., Lee, J.A., Moore, D.V., Sensen, C.W., Gordon, P., Duruflé, L., Gaasterland, T., Lopez, P., Müller, M., Philippe, H., 2002. The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba. Proc. Natl Acad. Sci. USA 99, 1414 1419.
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 1414-1419
-
-
Bapteste, E.1
Brinkmann, H.2
Lee, J.A.3
Moore, D.V.4
Sensen, C.W.5
Gordon, P.6
Duruflé, L.7
Gaasterland, T.8
Lopez, P.9
Müller, M.10
Philippe, H.11
-
5
-
-
0025287317
-
Phylogeny of the major tetrapod groups: Morphological data and divergence dates
-
Benton, M., 1990. Phylogeny of the major tetrapod groups: morphological data and divergence dates. J. Mol. Evol. 30, 409 422.
-
(1990)
J. Mol. Evol.
, vol.30
, pp. 409-422
-
-
Benton, M.1
-
6
-
-
20444491634
-
A review of long-branch attraction
-
Bergsten, J., 2005. A review of long-branch attraction. Cladistics 21, 163 193.
-
(2005)
Cladistics
, vol.21
, pp. 163-193
-
-
Bergsten, J.1
-
7
-
-
0036931408
-
The (super) tree of life: Procedures, problems, and prospects
-
Bininda-Emonds, O., Gittleman, J., Steel, M., 2002. The (super) tree of life: procedures, problems, and prospects. Annu. Rev. Ecol. Syst. 33, 265 289.
-
(2002)
Annu. Rev. Ecol. Syst.
, vol.33
, pp. 265-289
-
-
Bininda-Emonds, O.1
Gittleman, J.2
Steel, M.3
-
8
-
-
0001875826
-
The origin of fungi and pseudofungi
-
In. Rayner, A.D.M. Brasier, C.M. Moore, D. Eds. Cambridge University Press. Cambridge. pp.
-
Cavalier-Smith, T., 1987. The origin of fungi and pseudofungi. In : Rayner, A.D.M., Brasier, C.M., Moore, D. (Eds Evolutionary Biology of the Fungi. Cambridge University Press, Cambridge, pp. 339 353.
-
(1987)
Evolutionary Biology of the Fungi.
, pp. 339-353
-
-
Cavalier-Smith, T.1
-
9
-
-
0036208071
-
The phagotrophic origin of eukaryotes and phylogenetic classification of Protozoa
-
Cavalier-Smith, T., 2002. The phagotrophic origin of eukaryotes and phylogenetic classification of Protozoa. Int. J. Syst. Evol. Microbiol. 52, 297 354.
-
(2002)
Int. J. Syst. Evol. Microbiol.
, vol.52
, pp. 297-354
-
-
Cavalier-Smith, T.1
-
10
-
-
0000031660
-
Phylogenetics of seed plants: An analysis of nucleotide sequences from the plastid gene rbcL
-
Chase, M., Soltis, D.E., Olmstead, R.G., Morgan, D., Les, D.H., Mishler, B.D., Duvall, M.R., Price, R.A., Hills, H.G., Qiu, Y.-L., Kron, K.A., Rettig, J.H., Conti, E., Palmer, J.D., Manhart, J.R., Sytsma, K.J., Michaels, H.J., Kress, W.J., Karol, K.G., Clark, W.D., Hedren, M., Gaut, B.S., Jansen, R.K., Kim, K.-J., Wimpee, C.F., Smith, J.F., Furnier, G.R., Strauss, S.H., Xiang, Q.-Y., Plunkett, G.M., Soltis, P.S., Swensen, S.M., Williams, S.E., Gadek, P.A., Quinn, C.J., Eguiarte, L.E., Golenberg, E., Learn, G.H., Graham, S.W., Barrett, S.C.H., Dayanandan, S., Albert, V., 1993. Phylogenetics of seed plants: an analysis of nucleotide sequences from the plastid gene rbcL. Ann. Mo. Bot. Gard. 80, 528 580.
-
(1993)
Ann. Mo. Bot. Gard.
, vol.80
, pp. 528-580
-
-
Chase, M.1
Soltis, D.E.2
Olmstead, R.G.3
Morgan, D.4
Les, D.H.5
Mishler, B.D.6
Duvall, M.R.7
Price, R.A.8
Hills, H.G.9
Qiu, Y.-L.10
Kron, K.A.11
Rettig, J.H.12
Conti, E.13
Palmer, J.D.14
Manhart, J.R.15
Sytsma, K.J.16
Michaels, H.J.17
Kress, W.J.18
Karol, K.G.19
Clark, W.D.20
Hedren, M.21
Gaut, B.S.22
Jansen, R.K.23
Kim, K.-J.24
Wimpee, C.F.25
Smith, J.F.26
Furnier, G.R.27
Strauss, S.H.28
Xiang, Q.-Y.29
Plunkett, G.M.30
Soltis, P.S.31
Swensen, S.M.32
Williams, S.E.33
Gadek, P.A.34
Quinn, C.J.35
Eguiarte, L.E.36
Golenberg, E.37
Learn, G.H.38
Graham, S.W.39
Barrett, S.C.H.40
Dayanandan, S.41
Albert, V.42
more..
-
11
-
-
0037331904
-
Repeatability of clades as a criterion of reliability: A case study for molecular phylogeny of Acanthomorpha (Teleostei) with larger number of taxa
-
Chen, W.-J., Bonillo, C., Lecointre, G., 2003. Repeatability of clades as a criterion of reliability: a case study for molecular phylogeny of Acanthomorpha (Teleostei) with larger number of taxa. Mol. Phylogenet. Evol. 26, 262 288.
-
(2003)
Mol. Phylogenet. Evol.
, vol.26
, pp. 262-288
-
-
Chen, W.-J.1
Bonillo, C.2
Lecointre, G.3
-
12
-
-
42149157760
-
Broad phylogenomic sampling improves resolution of the animal tree of life
-
Dunn, C., Hejnol, A., Matus, D.Q., Pang, K., Browne, W.E., Smith, S.A., Seaver, E., Rouse, G.W., Obst, M., Edgecombe, G.D., Sørensen, M.V., Haddock, S.H.D., Schmidt-Rhaesa, A., Okusu, A., Kristensen, R.M., Wheeler, W.C., Martindale, M.Q., Giribet, G., 2008. Broad phylogenomic sampling improves resolution of the animal tree of life. Nature 452, 745 749.
-
(2008)
Nature
, vol.452
, pp. 745-749
-
-
Dunn, C.1
Hejnol, A.2
Matus, D.Q.3
Pang, K.4
Browne, W.E.5
Smith, S.A.6
Seaver, E.7
Rouse, G.W.8
Obst, M.9
Edgecombe, G.D.10
Sørensen, M.V.11
Haddock, S.H.D.12
Schmidt-Rhaesa, A.13
Okusu, A.14
Kristensen, R.M.15
Wheeler, W.C.16
Martindale, M.Q.17
Giribet, G.18
-
13
-
-
13244255415
-
MUSCLE: A multiple sequence alignment method with reduced time and space complexity
-
Edgar, R.C., 2004. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5, 1 19.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 1-19
-
-
Edgar, R.C.1
-
14
-
-
84959798530
-
Cases in which parsimony or compatibility methods will be positively misleading
-
Felsenstein, J., 1978. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27, 401 410.
-
(1978)
Syst. Zool.
, vol.27
, pp. 401-410
-
-
Felsenstein, J.1
-
15
-
-
37549054097
-
After a dozen years of progress the origin of angiosperms is still a great mystery
-
Frohlich, W., Chase, M., 2007. After a dozen years of progress the origin of angiosperms is still a great mystery. Nature 450, 1184 1189.
-
(2007)
Nature
, vol.450
, pp. 1184-1189
-
-
Frohlich, W.1
Chase, M.2
-
16
-
-
33745748862
-
The amphibian tree of life
-
Frost, D., Grant, T., Faivovich, J., Bain, R.H., Haas, A., Haddad, C.F.B., Channing, A., Wilkinson, M., de Sá, R.O., Donnellan, S.C., Raxworthy, C.J., Campbell, J.A., Blotto, B.L., Moler, P., Drewes, R.C., Nussbaum, R.A., Lynch, J.D., Green, D.M., Wheeler, W.C., 2006. The amphibian tree of life. Bull. Am. Mus. Nat. Hist. 297, 1 370.
-
(2006)
Bull. Am. Mus. Nat. Hist.
, vol.297
, pp. 1-370
-
-
Frost, D.1
Grant, T.2
Faivovich, J.3
Bain, R.H.4
Haas, A.5
Haddad, C.F.B.6
Channing, A.7
Wilkinson, M.8
De Sá, R.O.9
Donnellan, S.C.10
Raxworthy, C.J.11
Campbell, J.A.12
Blotto, B.L.13
Moler, P.14
Drewes, R.C.15
Nussbaum, R.A.16
Lynch, J.D.17
Green, D.M.18
Wheeler, W.C.19
-
17
-
-
2442449251
-
Inconsistencies in arguments for the supertree approach: Supermatrices versus supertrees of Crocodylia
-
Gatesy, J., Baker, R., Hayashi, C., 2004. Inconsistencies in arguments for the supertree approach: supermatrices versus supertrees of Crocodylia. Syst. Biol. 53, 342 355.
-
(2004)
Syst. Biol.
, vol.53
, pp. 342-355
-
-
Gatesy, J.1
Baker, R.2
Hayashi, C.3
-
18
-
-
0002045681
-
New morphological evidence for the phylogeny of Artiodactyla, Cetacea, and Mesonychidae
-
Geisler, J., 2001. New morphological evidence for the phylogeny of Artiodactyla, Cetacea, and Mesonychidae. Am. Mus. Novit. 3344, 1 53.
-
(2001)
Am. Mus. Novit.
, vol.3344
, pp. 1-53
-
-
Geisler, J.1
-
19
-
-
33646725128
-
Evidence for a clade composed of molluscs with serially repeated structures: Monoplacophorans are related to chitons
-
Giribet, G., Okusu, A., Lindgren, A.R., Huff, S.W., Schrödl, M., Nishiguchi, M.K., 2006. Evidence for a clade composed of molluscs with serially repeated structures: Monoplacophorans are related to chitons. Proc. Natl Acad. Sci. USA 103, 7723 7728.
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 7723-7728
-
-
Giribet, G.1
Okusu, A.2
Lindgren, A.R.3
Huff, S.W.4
Schrödl, M.5
Nishiguchi, M.K.6
-
20
-
-
38349086946
-
A modern look at the animal tree of life
-
Giribet, G., Dunn, C., Edgecombe, G., Rouse, G., 2007. A modern look at the animal tree of life. Zootaxa 1668, 61 79.
-
(2007)
Zootaxa
, vol.1668
, pp. 61-79
-
-
Giribet, G.1
Dunn, C.2
Edgecombe, G.3
Rouse, G.4
-
21
-
-
4544296370
-
Bayesian inference of the metazoan phylogeny: A combined molecular and morphological approach
-
Glenner, H., Hansen, A.J., Sørensen, M.V., Ronquist, F., Huelsenbeck, J.P., Willerslev, E., 2004. Bayesian inference of the metazoan phylogeny: a combined molecular and morphological approach. Curr. Biol. 14, 1644 1649.
-
(2004)
Curr. Biol.
, vol.14
, pp. 1644-1649
-
-
Glenner, H.1
Hansen, A.J.2
Sørensen, M.V.3
Ronquist, F.4
Huelsenbeck, J.P.5
Willerslev, E.6
-
22
-
-
0033499153
-
Analyzing large data sets in reasonable times: Solutions for composite optima
-
Goloboff, P.A., 1999. Analyzing large data sets in reasonable times: solutions for composite optima. Cladistics 15, 415 428.
-
(1999)
Cladistics
, vol.15
, pp. 415-428
-
-
Goloboff, P.A.1
-
23
-
-
0038048942
-
Parsimony, likelihood, and simplicity
-
Goloboff, P.A., 2003. Parsimony, likelihood, and simplicity. Cladistics 19, 91 103.
-
(2003)
Cladistics
, vol.19
, pp. 91-103
-
-
Goloboff, P.A.1
-
24
-
-
0036821385
-
Semi-strict supertrees
-
Goloboff, P.A., Pol, D., 2002. Semi-strict supertrees. Cladistics 18, 514 525.
-
(2002)
Cladistics
, vol.18
, pp. 514-525
-
-
Goloboff, P.A.1
Pol, D.2
-
25
-
-
34548554071
-
On divide-and-conquer strategies for parsimony analysis of large data sets: Rec-I-DCM3 versus TNT
-
Goloboff, P.A., Pol, D., 2007. On divide-and-conquer strategies for parsimony analysis of large data sets: Rec-I-DCM3 versus TNT. Syst. Biol. 56, 485 495.
-
(2007)
Syst. Biol.
, vol.56
, pp. 485-495
-
-
Goloboff, P.A.1
Pol, D.2
-
26
-
-
45749124657
-
TNT, a free program for phylogenetic analysis
-
Goloboff, P.A., Farris, J.S., Nixon, K.C., 2008. TNT, a free program for phylogenetic analysis. Cladistics 24, 774 786.
-
(2008)
Cladistics
, vol.24
, pp. 774-786
-
-
Goloboff, P.A.1
Farris, J.S.2
Nixon, K.C.3
-
27
-
-
0041834716
-
Analysis of the Amborella trichopoda chloroplast genome sequence suggests that Amborella is not a basal angiosperm
-
Goremykin, V., Hirsch-Ernst, K., Wölfl, S., Hellwig, F., 2003. Analysis of the Amborella trichopoda chloroplast genome sequence suggests that Amborella is not a basal angiosperm. Mol. Biol. Evol. 20, 1499 1505.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 1499-1505
-
-
Goremykin, V.1
Hirsch-Ernst, K.2
Wölfl, S.3
Hellwig, F.4
-
28
-
-
3242690862
-
The new view of animal phylogeny
-
Halanych, K., 2004. The new view of animal phylogeny. Annu. Rev. Ecol. Evol. Syst. 35, 229 256.
-
(2004)
Annu. Rev. Ecol. Evol. Syst.
, vol.35
, pp. 229-256
-
-
Halanych, K.1
-
29
-
-
0347723872
-
Angiosperm phylogeny based on matK sequence information
-
Hilu, K.W., Borsch, T., Müller, K., Soltis, D.E., Soltis, P.S., Savolainen, V., Chase, M.W., Powell, M.P., Alice, L.A., Evans, R., Sauquet, H., Neinhuis, C., Slotta, T.A.B., Rohwer, J.G., Campbell, C.S., Chatrou, L.W., 2003. Angiosperm phylogeny based on matK sequence information. Am. J. Bot. 90, 1758 1776.
-
(2003)
Am. J. Bot.
, vol.90
, pp. 1758-1776
-
-
Hilu, K.W.1
Borsch, T.2
Müller, K.3
Soltis, D.E.4
Soltis, P.S.5
Savolainen, V.6
Chase, M.W.7
Powell, M.P.8
Alice, L.A.9
Evans, R.10
Sauquet, H.11
Neinhuis, C.12
Slotta, T.A.B.13
Rohwer, J.G.14
Campbell, C.S.15
Chatrou, L.W.16
-
30
-
-
33750329972
-
Reconstructing the early evolution of Fungi using a six-gene phylogeny
-
James, T.Y., Kauff, F., Schoch, C.L., Matheny, P.B., Hofstetter, V., Cox, C.J., Celio, G., Gueidan, C., Fraker, E., Miadlikowska, J., Lumbsch, H.T., Rauhut, A., Reeb, V., Arnold, A.E., Amtoft, A., Stajich, J.E., Hosaka, K., Sung, G.-J., Johnson, D., O'Rourke, B., Crockett, M., Binder, M., Curtis, J.M., Slot, J.C., Zheng, W., Wilson, A.W., Schüssler, A., Longcore, J.E., O'Donnell, K., Mozley-Standridge, S., Porter, D., Letcher, P.M., Powell, M.J., Taylor, J.W., White, M.M., Griffith, G.W., Davies, D.R., Humber, R.A., Morton, J.B., Sugiyama, J., Rossman, A.Y., Rogers, J.D., Pfister, D.H., Hewitt, D., Hansen, K., Hambleton, S., Shoemaker, R.A., Kohlmeyer, J., Volkmann-Kohlmeyer, B., Spotts, R.A., Serdani, M., Crous, P.W., Hughes, K.W., Matsuura, K., Langer, E., Langer, G., Untereiner, W.A., Lücking, R., Büdel, B., Geiser, D.M., 2006. Reconstructing the early evolution of Fungi using a six-gene phylogeny. Nature 443, 818 822.
-
(2006)
Nature
, vol.443
, pp. 818-822
-
-
James, T.Y.1
Kauff, F.2
Schoch, C.L.3
Matheny, P.B.4
Hofstetter, V.5
Cox, C.J.6
Celio, G.7
Gueidan, C.8
Fraker, E.9
Miadlikowska, J.10
Lumbsch, H.T.11
Rauhut, A.12
Reeb, V.13
Arnold, A.E.14
Amtoft, A.15
Stajich, J.E.16
Hosaka, K.17
Sung, G.-J.18
Johnson, D.19
O'Rourke, B.20
Crockett, M.21
Binder, M.22
Curtis, J.M.23
Slot, J.C.24
Zheng, W.25
Wilson, A.W.26
Schüssler, A.27
Longcore, J.E.28
O'Donnell, K.29
Mozley-Standridge, S.30
Porter, D.31
Letcher, P.M.32
Powell, M.J.33
Taylor, J.W.34
White, M.M.35
Griffith, G.W.36
Davies, D.R.37
Humber, R.A.38
Morton, J.B.39
Sugiyama, J.40
Rossman, A.Y.41
Rogers, J.D.42
Pfister, D.H.43
Hewitt, D.44
Hansen, K.45
Hambleton, S.46
Shoemaker, R.A.47
Kohlmeyer, J.48
Volkmann-Kohlmeyer, B.49
Spotts, R.A.50
Serdani, M.51
Crous, P.W.52
Hughes, K.W.53
Matsuura, K.54
Langer, E.55
Langer, G.56
Untereiner, W.A.57
Lücking, R.58
Büdel, B.59
Geiser, D.M.60
more..
-
31
-
-
37649007931
-
Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
-
Jansen, R., Cai, Z., Raubeson, L.A., Daniell, H., dePamphilis, C.W., Leebens-Mack, J., Müller, K.F., Guisinger-Bellian, M., Haberle, R.C., Hansen, A.K., Chumley, T.W., Lee, S.-B., Peery, R., McNeal, J.R., Kuehl, J.V., Boore, J.L., 2007. Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns. Proc. Natl Acad. Sci. USA 104, 19369 19374.
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 19369-19374
-
-
Jansen, R.1
Cai, Z.2
Raubeson, L.A.3
Daniell, H.4
Depamphilis, C.W.5
Leebens-Mack, J.6
Müller, K.F.7
Guisinger-Bellian, M.8
Haberle, R.C.9
Hansen, A.K.10
Chumley, T.W.11
Lee, S.-B.12
Peery, R.13
McNeal, J.R.14
Kuehl, J.V.15
Boore, J.L.16
-
32
-
-
0032420129
-
Simultaneous parsimony jackknife analysis of 2538 rbcL DNA sequences reveals support for major clades of green plants, land plants, seed plants and flowering plants
-
Källersjö, M., Farris, J.S., Chase, M.W., Bremer, B., Fay, M.F., Humpries, C.J., Petersen, G., Seberg, O., Bremer, K., 1999. Simultaneous parsimony jackknife analysis of 2538 rbcL DNA sequences reveals support for major clades of green plants, land plants, seed plants and flowering plants. Plant. Syst. Evol. 213, 259 287.
-
(1999)
Plant. Syst. Evol.
, vol.213
, pp. 259-287
-
-
Källersjö, M.1
Farris, J.S.2
Chase, M.W.3
Bremer, B.4
Fay, M.F.5
Humpries, C.J.6
Petersen, G.7
Seberg, O.8
Bremer, K.9
-
33
-
-
45949107473
-
Recent developments in the MAFFT multiple sequence alignment program
-
Katoh, T., 2008. Recent developments in the MAFFT multiple sequence alignment program. Brief. Bioinf. 9, 286 298.
-
(2008)
Brief. Bioinf.
, vol.9
, pp. 286-298
-
-
Katoh, T.1
-
34
-
-
13744252890
-
MAFFT version 5: Improvement in accuracy of multiple sequence alignment
-
Katoh, K., Kuma, K., Toh, H., Miyata, T., 2005. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res. 33 (2 511 518.
-
(2005)
Nucleic Acids Res.
, vol.33
, Issue.2
, pp. 511-518
-
-
Katoh, K.1
Kuma, K.2
Toh, H.3
Miyata, T.4
-
35
-
-
7244221755
-
Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous
-
Kolaczkowski, B., Thornton, J., 2004. Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous. Nature 431, 980 984.
-
(2004)
Nature
, vol.431
, pp. 980-984
-
-
Kolaczkowski, B.1
Thornton, J.2
-
36
-
-
34547803149
-
Phylogenetic supermatrix analysis of GenBank sequences from 2228 papilionoid legumes
-
McMahon, M.M., Sanderson, M.J., 2006. Phylogenetic supermatrix analysis of GenBank sequences from 2228 papilionoid legumes. Syst. Biol. 55, 818 836.
-
(2006)
Syst. Biol.
, vol.55
, pp. 818-836
-
-
McMahon, M.M.1
Sanderson, M.J.2
-
37
-
-
37549054628
-
Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms
-
Moore, M., Bell, C., Soltis, P., Soltis, D.E., 2007. Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms. Proc. Natl Acad. Sci. USA 104, 19363 19368.
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 19363-19368
-
-
Moore, M.1
Bell, C.2
Soltis, P.3
Soltis, D.E.4
-
38
-
-
34249698083
-
Global eukaryote phylogeny: Combined small- and large-subunit ribosomal DNA trees support monophyly of Rhizaria, Retaria and Excavata
-
Moreira, D., von der Heyden, S., Bass, D., López-García, P., Chao, E., Cavalier-Smith, T., 2007. Global eukaryote phylogeny: combined small- and large-subunit ribosomal DNA trees support monophyly of Rhizaria, Retaria and Excavata. Mol. Phylogenet. Evol. 44, 255 266.
-
(2007)
Mol. Phylogenet. Evol.
, vol.44
, pp. 255-266
-
-
Moreira, D.1
Von Der Heyden, S.2
Bass, D.3
López-García, P.4
Chao, E.5
Cavalier-Smith, T.6
-
39
-
-
32144453325
-
-
Moret, B.M. Computational challenges from the Tree of Life. Proceedings of the 7th Workshop on Algorithm Engineering and Experiments (ALENEX'05). SIAM Press. Philadelphia. pp.
-
Moret, B.M., 2005. Computational challenges from the Tree of Life. Proceedings of the 7th Workshop on Algorithm Engineering and Experiments (ALENEX'05). SIAM Press, Philadelphia, pp. 3 16.
-
(2005)
, pp. 3-16
-
-
-
40
-
-
0035252080
-
Molecular phylogenetics and the origin of placental mammals
-
Murphy, W., Eizirk, E., Johnson, W., Zhang, Y., Ryder, O., O'Brien, S., 2001. Molecular phylogenetics and the origin of placental mammals. Nature 409, 614 618.
-
(2001)
Nature
, vol.409
, pp. 614-618
-
-
Murphy, W.1
Eizirk, E.2
Johnson, W.3
Zhang, Y.4
Ryder, O.5
O'Brien, S.6
-
41
-
-
0003728605
-
-
John Wiley & Sons. Hoboken, NJ, USA.
-
Nelson, J.S., 2006. Fishes of the World, 4th edn. John Wiley & Sons, Hoboken, NJ, USA.
-
(2006)
Fishes of the World, 4th Edn.
-
-
Nelson, J.S.1
-
42
-
-
66649127977
-
Impact of increased character sampling on the phylogeny of Cetartiodactyla (Mammalia): Combined analysis including fossils
-
O'Leary, M., Gatesy, J., 2007. Impact of increased character sampling on the phylogeny of Cetartiodactyla (Mammalia): combined analysis including fossils. Cladistics 23, 1 46.
-
(2007)
Cladistics
, vol.23
, pp. 1-46
-
-
O'Leary, M.1
Gatesy, J.2
-
43
-
-
33745145518
-
Parsimony overcomes statistical inconsistency with the addition of more data from the same gene
-
Pickett, K., Tolman, G., Wheeler, W., Wenzel, J., 2005. Parsimony overcomes statistical inconsistency with the addition of more data from the same gene. Cladistics 21, 438 445.
-
(2005)
Cladistics
, vol.21
, pp. 438-445
-
-
Pickett, K.1
Tolman, G.2
Wheeler, W.3
Wenzel, J.4
-
44
-
-
0033583163
-
Acoel flatworms: Earliest extant bilaterian Metazoans, not members of Platyhelminthes
-
Ruiz-Trillo, I., Riutort, M., Littlewood, D., Herniou, E., Baguñà, J., 1999. Acoel flatworms: earliest extant bilaterian Metazoans, not members of Platyhelminthes. Science 283, 1919 1923.
-
(1999)
Science
, vol.283
, pp. 1919-1923
-
-
Ruiz-Trillo, I.1
Riutort, M.2
Littlewood, D.3
Herniou, E.4
Baguñà, J.5
-
45
-
-
33947248069
-
Hydatellaceae identified as a new branch near the base of the angiosperm phylogenetic tree
-
Saarela, J., 2007. Hydatellaceae identified as a new branch near the base of the angiosperm phylogenetic tree. Nature 446, 312 315.
-
(2007)
Nature
, vol.446
, pp. 312-315
-
-
Saarela, J.1
-
46
-
-
34548403121
-
Construction and annotation of large phylogenetic trees
-
Sanderson, M.J., 2007. Construction and annotation of large phylogenetic trees. Aust. Syst. Bot. 20, 287 301.
-
(2007)
Aust. Syst. Bot.
, vol.20
, pp. 287-301
-
-
Sanderson, M.J.1
-
47
-
-
60849123934
-
Mega-phylogeny approach for comparative biology: An alternative to supertree and supermatrix approaches
-
Smith, S.A., Beaulieu, J.M., Donoghue, M.J., 2009. Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches. BMC Evol. Biol. 2009, 9:37.
-
(2009)
BMC Evol. Biol.
, vol.2009
, pp. 937
-
-
Smith, S.A.1
Beaulieu, J.M.2
Donoghue, M.J.3
-
48
-
-
4644250777
-
Amborella not a basal angiosperm? Not so fast
-
Soltis, D.E., Soltis, P.S., 2004. Amborella not a basal angiosperm? Not so fast. Am. J. Bot. 91, 997 1001.
-
(2004)
Am. J. Bot.
, vol.91
, pp. 997-1001
-
-
Soltis, D.E.1
Soltis, P.S.2
-
49
-
-
0033838109
-
Angiosperm phylogeny inferred from 18S rDNA, rbcL, and atpB sequences
-
Soltis, D.E., Soltis, P.S., Chase, M.W., Mort, M.E., Albach, D.C., Zanis, M., Savolainen, V., Hahn, W.H., Hoop, S.B., Fay, M.F., Axtell, M., Swensen, S.M., Prince, L.M., Kress, W.J., Nixon, K.C., Farris, J.S., 2000. Angiosperm phylogeny inferred from 18S rDNA, rbcL, and atpB sequences. Bot. J. Linn. Soc. 133, 381 461.
-
(2000)
Bot. J. Linn. Soc.
, vol.133
, pp. 381-461
-
-
Soltis, D.E.1
Soltis, P.S.2
Chase, M.W.3
Mort, M.E.4
Albach, D.C.5
Zanis, M.6
Savolainen, V.7
Hahn, W.H.8
Hoop, S.B.9
Fay, M.F.10
Axtell, M.11
Swensen, S.M.12
Prince, L.M.13
Kress, W.J.14
Nixon, K.C.15
Farris, J.S.16
-
50
-
-
4644350604
-
Genome-scale data, angiosperm relationships, and 'ending incongruence': A cautionary tale in phylogenetics
-
Soltis, D.E., Albert, V.A., Savolainen, V., Hilu, K., Qiu, Y.-L., Chase, M.W., Farris, J.S., Stefanović, S., Rice, D.W., Palmer, J.D., Soltis, P.S., 2004. Genome-scale data, angiosperm relationships, and 'ending incongruence': a cautionary tale in phylogenetics. Trends Plant Sci. 9, 477 483.
-
(2004)
Trends Plant Sci.
, vol.9
, pp. 477-483
-
-
Soltis, D.E.1
Albert, V.A.2
Savolainen, V.3
Hilu, K.4
Qiu, Y.-L.5
Chase, M.W.6
Farris, J.S.7
Stefanović, S.8
Rice, D.W.9
Palmer, J.D.10
Soltis, P.S.11
-
51
-
-
33750403801
-
RAxML-VI HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis, A., 2006. RAxML-VI HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22, 2688 2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
52
-
-
0034035066
-
Parsimony, likelihood, and the role of models in molecular phylogenetics
-
Steel, M., Penny, D., 2000. Parsimony, likelihood, and the role of models in molecular phylogenetics. Mol. Biol. Evol. 17, 839 850.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 839-850
-
-
Steel, M.1
Penny, D.2
-
53
-
-
42149175912
-
POY 4.0.2885
-
Varón, A., Vinh, L., Bomash, I., Wheeler, W., 2008. POY 4.0.2885. Am. Mus. Nat. Hist. http://research.amnh.org/scicomp/projects/poy.php
-
(2008)
Am. Mus. Nat. Hist.
-
-
Varón, A.1
Vinh, L.2
Bomash, I.3
Wheeler, W.4
-
54
-
-
0141795524
-
Taxonomic misidentification in public DNA databases
-
Vilgalys, R., 2003. Taxonomic misidentification in public DNA databases. New Phytol. 160, 4 5.
-
(2003)
New Phytol.
, vol.160
, pp. 4-5
-
-
Vilgalys, R.1
-
55
-
-
39749201627
-
A broadly sampled multigene trees of eukaryotes
-
Yoon, H.-S., Grant, Y.I., Tekle, M., Wu, M., Chao, B.C., Cole, J.C., Logsdon, J.M., Patterson, D.J., Bhattacharya, D., Katz, L.A., 2008. A broadly sampled multigene trees of eukaryotes. BMC Evol. Biol. 8, 14.
-
(2008)
BMC Evol. Biol.
, vol.8
, pp. 14
-
-
Yoon, H.-S.1
Grant, Y.I.2
Tekle, M.3
Wu, M.4
Chao, B.C.5
Cole, J.C.6
Logsdon, J.M.7
Patterson, D.J.8
Bhattacharya, D.9
Katz, L.A.10
-
56
-
-
0001895697
-
Evolutionary divergence and convergence in proteins
-
in. Bryson, V. Vogel, H.J. Eds. Academic Press. New York. pp.
-
Zuckerkandl, E., Pauling, L., 1965. Evolutionary divergence and convergence in proteins. in : Bryson, V., Vogel, H.J. (Eds Evolving Genes and Proteins. Academic Press, New York, pp. 97 166.
-
(1965)
Evolving Genes and Proteins.
, pp. 97-166
-
-
Zuckerkandl, E.1
Pauling, L.2
|