Utilization of amino acids by bacteria from the pig small intestine

Amino Acids

Volumn 39, Issue 5, 2010, Pages 1201-1215

  Dai, Zhao Lai ^a   Zhang, Jing ^a   Wu, Guoyao ^b   Zhu, Wei Yun ^a  

^a NANJING AGRICULTURAL UNIVERSITY   (China)

^b TEXAS A AND M UNIVERSITY   (United States)

Author keywords

Bacterial community; Metabolism; Pig; Small intestine

Indexed keywords

ARGININE; ASPARTIC ACID; CYSTINE; GLUTAMIC ACID; GLYCINE; HISTIDINE; ISOLEUCINE; LEUCINE; LYSINE; METHIONINE; PHENYLALANINE; PROLINE; RNA 16S; SERINE; THREONINE; TRYPTOPHAN; TYROSINE; VALINE;

ACIDAMINOCOCCUS FERMENTANS; AMINO ACID COMPOSITION; AMINO ACID METABOLISM; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; BACTERIUM CULTURE; CONTROLLED STUDY; CULTURE MEDIUM; DENATURING GRADIENT GEL ELECTROPHORESIS; DNA ISOLATION; DUODENUM; ESCHERICHIA COLI; HYDROLYSIS; ILEUM; JEJUNUM; KLEBSIELLA; MEGASPHAERA ELSDENII; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN SYNTHESIS; SMALL INTESTINE; STREPTOCOCCUS; SUCCINIVIBRIONACEAE; SWINE;

AMINO ACIDS; ANIMALS; BACTERIA; DENATURING GRADIENT GEL ELECTROPHORESIS; INTESTINE, SMALL; SWINE;

ANIMALIA; BACTERIA (MICROORGANISMS); KLEBSIELLA SP.; MEGASPHAERA ELSDENII; MITSUOKELLA; STREPTOCOCCUS SP.; SUIDAE;

EID: 78449294938     PISSN: 09394451     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00726-010-0556-9     Document Type: Article

References (74)

1. SF Altschul W Gish W Miller EW Myers DJ Lipman 1990 Basic local alignment search tool J Mol Biol 215 403 410 1:CAS:528:DyaK3MXitVGmsA%3D%3D 2231712
2. DH Baker 2009 Advances in protein-amino acid nutrition of poultry Amino Acids 37 29 41 1:CAS:528:DC%2BD1MXltlemtLk%3D 10.1007/s00726-008-0198-3 19009229
3. WG Bergen G Wu 2009 Intestinal nitrogen recycling and utilization in health and disease J Nutr 139 821 825 1:CAS:528:DC%2BD1MXhtlCltr%2FJ 10.3945/jn.109.104497 19282369
4. F Blachier F Mariotti JF Huneau D Tomé 2007 Effects of amino acid-derived luminal metabolites on the colonic epithelium and physiopathological consequences Amino Acids 33 547 562 1:CAS:528: DC%2BD2sXhtlSlsrnO 10.1007/s00726-006-0477-9 17146590
5. F Blachier AH Lancha Jr C Boutry D Tomé 2010 Alimentary proteins, amino acids and cholesterolemia Amino Acids 38 15 22 1:CAS:528: DC%2BC3cXhtVeht74%3D 10.1007/s00726-009-0239-6 19184342
6. Booijink CCGM (2009) Analysis of diversity and function of the human small intestinal microbiota. Thesis, Wageningen University Press, The Netherlands
7. CCGM Booijink EG Zoetendal M Kleerebezem WM de Vos 2007 Microbial community in the human small intestine: coupling diversity to metagenomics Future Microbiol 2 285 295 1:CAS:528:DC%2BD2sXntlOisbo%3D 10.2217/17460913.2.3. 285 17661703
8. DG Burrin PJ Reeds 1997 Alternative fuels in the gastrointestinal tract Curr Opin Gastroenterol 13 165 170 10.1097/00001574-199703000-00015
9. C Chassard KP Scott P Marquet JC Martin C Del'homme M Dapoigny HJ Flint A Bernalier-Donadille 2008 Assessment of metabolic diversity within the intestinal microbiota from healthy humans using combined molecular and cultural approaches FEMS Microbiol Ecol 66 496 504 1:CAS:528:DC%2BD1cXhsVyqu7nP 10.1111/j.1574-6941.2008.00595.x 18811647
10. LX Chen YL Yin WS Jobgen SC Jobgen DA Knabe W Hu G Wu 2007 In vitro oxidation of essential amino acids by jejunal mucosal cells of growing pigs Livest Sci 109 19 23 10.1016/j.livsci.2007.01.027
11. LX Chen P Li JJ Wang XL Li HJ Gao YL Yin YQ Hou G Wu 2009 Catabolism of nutritionally essential amino acids in developing porcine enterocytes Amino Acids 37 143 152 1:CAS:528:DC%2BD1MXltlemtb8%3D 10.1007/s00726-009-0268-1 19291365
12. S Duncan P Louis HJ Flint 2004 Lactate-utilizing bacteria, isolated from human feces, that produce butyrate as a major fermentation product Appl Environ Microbiol 70 5810 5817 1:CAS:528:DC%2BD2cXosl2itb8%3D 10.1128/AEM.70.10.5810- 5817.2004 15466518
13. M Dy E Schneider 2004 Histamine-cytokine connection in immunity and hematopoiesis Cytokine Growth Factor Rev 15 393 410 1:CAS:528: DC%2BD2cXmvFelsbo%3D 10.1016/j.cytogfr.2004.06.003 15450254
14. M Eklou-Lawson F Bernard N Neveux C Chaumontet C Bos AM Davila-Gay D Tome L Cynober F Blachier 2009 Colonic luminal ammonia and portal blood l-glutamine and l-arginine concentrations: a possible link between colon mucosa and liver ureagenesis Amino Acids 37 751 760 1:CAS:528:DC%2BD1MXhtFyqt7jF 10.1007/s00726-008-0218-3 19082688
15. R Elango RO Ball PB Pencharz 2009 Amino acid requirements in humans: with a special emphasis on the metabolic availability of amino acids Amino Acids 37 19 27 1:CAS:528:DC%2BD1MXltlemtbw%3D 10.1007/s00726-009-0234-y 19156481
16. CF Favier EE Vaughan WM De Vos AD Akkermans 2002 Molecular monitoring of succession of bacterial communities in human neonates Appl Environ Microbiol 68 219 226 1:CAS:528:DC%2BD38Xjt1Wntw%3D%3D 10.1128/AEM.68.1.219-226.2002 11772630
17. HJ Flint S Duncan KP Scott P Louis 2007 Interactions and competition within the microbial community of the human colon: links between diet and health Environ Microbiol 9 1101 1111 1:CAS:528:DC%2BD2sXlsFWntb0%3D 10.1111/j.1462-2920.2007.01281.x 17472627
18. MF Fuller PJ Reeds 1998 Nitrogen cycling in the gut Annu Rev Nutr 18 385 411 1:CAS:528:DyaK1cXkvVWgt7c%3D 10.1146/annurev.nutr.18.1.385 9706230
19. TE Haynes P Li XL Li K Shimotori H Sato NE Flynn JJ Wang DA Knabe G Wu 2009 l-Glutamine or l-alanyl- l-glutamine prevents oxidant- or endotoxin- induced death of neonatal enterocytes Amino Acids 37 131 142 1:CAS:528:DC%2BD1MXltlemtb0%3D 10.1007/s00726-009-0243-x 19189199
20. QH He XF Kong G Wu PP Ren HR Tang FH Hao RL Huang TJ Li BE Tan P Li ZR Tang YL Yin YN Wu 2009 Metabolomic analysis of the response of growing pigs to dietary l-arginine supplementation Amino Acids 37 199 208 1:CAS:528: DC%2BD1MXltlemtLY%3D 10.1007/s00726-008-0192-9 18989615
21. XF Kong YL Yin QH He FG Yin HJ Liu TJ Li RL Huang MM Geng Z Ruan ZY Deng MY Xie G Wu 2009 Dietary supplementation with Chinese herbal powder enhances ileal digestibilities and serum concentrations of amino acids in young pigs Amino Acids 37 573 582 1:CAS:528:DC%2BD1MXhtFyqt7nE 10.1007/s00726-008-0176-9 18763018
22. SR Konstantinov WY Zhu BA Williams S Tamminga WM de Vos ADL Akkermans 2003 Effect of fermentable carbohydrates on piglet faecal bacterial communities as revealed by denaturing gradient gel electrophoresis analysis of 16S ribosomal DNA FEMS Microbiol Ecol 43 225 235 1:CAS:528:DC%2BD3sXht1Kmtrk%3D 10.1111/j.1574-6941.2003.tb01062.x 19719683
23. SR Konstantinov AA Awati BA Williams BG Miller P Jones CR Stokes ADL Akkermans H Smidt WM de Vos 2006 Post-natal development of the porcine microbiota composition and activities Environ Microbiol 8 1191 1199 1:CAS:528:DC%2BD28XnsVCksL0%3D 10.1111/j.1462-2920.2006.01009.x 16817927
24. TD Leser JZ Amenuvor TK Jensen RH Lindecrona M Boye K Møller 2002 Culture-independent analysis of gut bacteria: the pig gastrointestinal tract microbiota revisited Appl Environ Microbiol 68 673 690 1:CAS:528: DC%2BD38XhtV2nsrY%3D 10.1128/AEM.68.2.673-690.2002 11823207
25. RE Ley DA Peterson JI Gordon 2006 Ecological and evolutionary forces shaping microbial diversity in the human intestine Cell 124 837 848 1:CAS:528:DC%2BD28Xit1Kltbs%3D 10.1016/j.cell.2006.02.017 16497592
26. P Li YL Yin D Li SW Kim G Wu 2007 Amino acids and immune function Br J Nutr 2007 98 237 252 10.1017/S000711450769936X
27. M Li B Wang M Zhang M Rantalainen S Wang H Zhou Y Zhang J Shen X Pang M Zhang H Wei Y Chen H Lu J Zuo M Su Y Qiu W Jia C Xiao LM Smith S Yang E Holmes H Tang G Zhao JK Nicholson L Li L Zhao 2008 Symbiotic gut microbes modulate human metabolic phenotypes Proc Natl Acad Sci USA 105 2117 2122 1:CAS:528: DC%2BD1cXitl2ls78%3D 10.1073/pnas.0712038105 18252821
28. P Li SW Kim XL Li S Datta WG Pond G Wu 2009 Dietary supplementation with cholesterol and docosahexaenoic acid affects concentrations of amino acids in tissues of young pigs Amino Acids 37 709 716 10.1007/s00726-008-0196-5 18972185
29. XL Li FW Bazer H Gao W Jobgen GA Johnson P Li JR McKnight MC Satterfield TE Spencer G Wu 2009 Amino acids and gaseous signaling Amino Acids 37 65 78 10.1007/s00726-009-0264-5 19266154
30. JR Lin IP Armstead 1995 The in vitro uptake and metabolism of peptides and amino acids by five species of rumen bacteria J Appl Bacteriol 78 116 124
31. JC MacRae LA Bruce DS Brown AG Calder 1997 Amino acid use by the gastrointestinal tract of sheep given lucerne forage Am J Physiol Gastrointest Liver Physiol 273 1200 1207
32. F-PJ Martin Y Wang N Sprenger IKS Yap T Lundstedt P Lek S Rezzi Z Ramadan PV Bladeren LB Fay S Kochhar JC Lindon E Holmes JK Nicholson 2008 Probiotic modulation of symbiotic gut microbial-host metabolic interactions in a humanized microbiome mouse model Mol Syst Biol 4 157 18197175
33. F-PJ Martin N Sprenger IKS Yap Y Wang R Bibiloni F Rochat S Rezzi C Cherbut S Kochhar JC Lindon E Holmes JK Nicholson 2009 Panorganismal gut microbiome-host metabolic crosstalk J Proteome Res 8 2090 2105 1:CAS:528:DC%2BD1MXjtFKmsLo%3D 10.1021/pr801068x 19281268
34. CC Metges 2000 Contribution of microbial amino acids to amino acid homeostasis of the host J Nutr 130 1857S 1864S 1:CAS:528:DC%2BD3cXks12iur8%3D 10867063
35. CC Metges AE El-Khoury L Henneman KJ Petzke I Grant S Bedri PP Pereira AM Ajami MF Fuller VR Young 1999 Availability of intestinal microbial lysine for whole body lysine homeostasis in human subjects Am J Physiol 277 E597 E607 1:CAS:528:DyaK1MXntFCjtrk%3D 10516118
36. LL Mikkelsen O Højberg BB Jensen 2007 Coarse structured feed stimulates members of the genera Lactobacillus and Mitsuokella as well as propionate and butyrate producers in the pig stomach Livest Sci 109 153 156 10.1016/j.livsci.2007.01.130
37. U Nübel B Engelen A Felske J Snaidr A Wieshuber RI Amann W Ludwig H Backhaus 1996 Sequence heterogeneities of genes encoding 16S rRNA in Paenibacillus polymixa detected by temperature gradient gel electrophoresis J Bacteriol 178 5636 5643 8824607
38. JM Rhoads G Wu 2009 Glutamine, arginine, and leucine signaling in the intestine Amino Acids 37 111 122 1:CAS:528:DC%2BD1MXltlemt7k%3D 10.1007/s00726-008-0225-4
39. M Rogosa 1969 Acidaminococcus gen. n., Acidaminococcus fermentans sp. n., anaerobic gram-negative diplococci using amino acids as the sole energy source for growth J Bacteriol 98 756 766 1:CAS:528:DyaF1MXktVWjurY%3D 5784223
40. M Ros M Goberna PA Pascual S Klammer H Insam 2008 16S rDNA analysis reveals low microbial diversity in community level physiological profile assays J Microbiol Methods 72 221 226 1:CAS:528:DC%2BD1cXislKntrY%3D 10.1016/j.mimet.2008.01.003 18258321
41. JB Russell JL Rychlik 2001 Factors that alter rumen microbial ecology Science 292 1119 1122 1:CAS:528:DC%2BD3MXjs1Chur8%3D 10.1126/science.1058830 11352069
42. JL Rychlik R LaVera JB Russell 2002 Amino acid deamination by ruminal Megasphaera elsdenii strains Curr Microbiol 45 340 345 1:CAS:528: DC%2BD38XntFentr4%3D 10.1007/s00284-002-3743-4 12232664
43. CJ Sanguinetti E Dias Neto AJG Simpson 1994 Rapid silver staining and recovery of PCR products separated on polyacrylamide gels BioTechniques 17 915 919
44. UE Schaible SHE Kaufmann 2005 A nutritive view on the host-pathogen interplay Trends Microbiol 13 373 380 1:CAS:528:DC%2BD2MXmvFSisLc%3D 10.1016/j.tim.2005.06.009 15993074
45. C Scheifinger N Russell W Chalupa 1976 Degradation of amino acids by pure cultures of rumen bacteria J Anim Sci 43 821 827 1:CAS:528:DyaE28XlslCjtLs%3D 977499
46. EA Smith GT Macfarlane 1996 Studies on amine production in the human colon: enumeration of amine-forming bacteria and physiological effects of carbohydrate and pH Anaerobe 2 285 297 1:CAS:528:DyaK2sXisFOhuw%3D%3D 10.1006/anae.1996.0037
47. EA Smith GT Macfarlane 1997 Dissimilatory amino acid metabolism in human colonic bacteria Anaerobe 3 327 337 1:CAS:528:DyaK1cXkvFOquw%3D%3D 10.1006/anae.1997.0121 16887608
48. EA Smith GT Macfarlane 1998 Enumeration of amino acid fermenting bacteria in the human large intestine: effects of pH and starch on peptide metabolism and dissimilation of amino acids FEMS Microbiol Ecol 25 355 368 1:CAS:528:DyaK1cXitlSrsrk%3D 10.1111/j.1574-6941.1998.tb00487.x
49. B Stoll DG Burrin 2006 Measuring splanchnic amino acid metabolism in vivo using stable isotopic tracers J Anim Sci 84 E60 E72 16582093
50. B Stoll J Henry PJ Reeds H Yu F Jahoor DG Burrin 1998 Catabolism dominates the first-pass intestinal metabolism of dietary essential amino acids in milk protein-fed piglets J Nutr 128 606 614 1:CAS:528:DyaK1cXhs1Wls7s%3D 9482771
51. B Tan Y Yin Z Liu X Li H Xu X Kong R Huang W Tang I Shinzato SB Smith G Wu 2009 Dietary l-arginine supplementation increases muscle gain and reduces body fat mass in growing-finishing pigs Amino Acids 37 169 175 1:CAS:528:DC%2BD1MXltlemt7Y%3D 10.1007/s00726-008-0148-0 18683021
52. B Tan XG Li XF Kong RL Huang Z Ruan K Yao ZY Deng MY Xie I Shinzato YL Yin G Wu 2009 Dietary l-arginine supplementation enhances the immune status in early-weaned piglets Amino Acids 37 323 331 1:CAS:528:DC%2BD1MXotVKisrg%3D 10.1007/s00726-008-0155-1 18712273
53. Tan BE, Yin YL, Kong XF, Li P, Li XL, Gao HJ, Li XG, Huang RL, Wu G (2009c) l-Arginine stimulates proliferation and prevents endotoxin-induced death of intestinal cells. Amino Acids. doi: 10.1007/s00726-009-0334-8
54. D Torrallardona CI Harris MF Fuller 2003 Pigs' gastrointestinal microflora provide them with essential amino acids J Nutr 133 1127 1131 1:CAS:528:DC%2BD3sXivVeku7Y%3D 12672930
55. D Torrallardona CI Harris MF Fuller 2003 Lysine synthesized by the gastrointestinal microflora of pigs is absorbed, mostly in the small intestine Am J Physiol Endocrinol Metab 284 E1177 E1180 1:CAS:528:DC%2BD3sXltVegt7Y%3D 12569087
56. T Tsukahara H Koyama M Okada K Ushida 2002 Stimulation of butyrate production by gluconic acid in batch culture of pig cecal digesta and identification of butyrate-producing bacteria J Nutr 132 2229 2234 1:CAS:528:DC%2BD38XmtF2qtr8%3D 12163667
57. SRD van der Schoor PJ Reeds B Stoll JF Henry JR Rosenberg DG Burrin JB van Goudoever 2002 The high metabolic cost of a functional gut Gastroenterology 123 1931 1940 10.1053/gast.2002.37062
58. JB van Goudoever B Stoll JF Henry DG Burrin PJ Reeds 2000 Adaptive regulation of intestinal lysine metabolism Proc Natl Acad Sci USA 97 11620 11625 10.1073/pnas.200371497 11016965
59. RJ Wallace 1986 Catabolism of amino acids by Megasphaera elsdenii LC1 Appl Environ Microbiol 51 1141 1143 1:CAS:528:DyaL28XktVeht7c%3D 16347061
60. RJ Wallace 1996 Ruminal microbial metabolism of peptides and amino acids J Nutr 126 1326S 1334S 1:CAS:528:DyaK28XhvFant7k%3D 8642480
61. WW Wang SY Qiao DF Li 2009 Amino acids and gut function Amino Acids 37 105 110 1:CAS:528:DC%2BD1MXltlemtLo%3D 10.1007/s00726-008-0152-4 18670730
62. X Wang D Ou J Yin G Wu J Wang 2009 Proteomic analysis reveals altered expression of proteins related to glutathione metabolism and apoptosis in the small intestine of zinc oxide-supplemented piglets Amino Acids 37 209 218 10.1007/s00726-009-0242-y 19184341
63. K Westlake RI Mackie 1990 Peptide and amino acid transport in Streptococcus bovis Appl Microbiol Biotechnol 34 97 102 1:CAS:528: DyaK3MXhtFyhtb8%3D 10.1007/BF00170931 1366976
64. DD Whitt RD DeMoss 1975 Effect of microflora on the free amino acid distribution in various regions of the mouse gastrointestinal tract Appl Microbiol 30 609 615 1:CAS:528:DyaE28XivFWi 1190761
65. BA Williams MWA Verstegen S Tamminga 2001 Fermentation in the large intestine of single-stomached animals and its relationship to animal health Nutr Res Rev 14 207 227 1:STN:280:DC%2BD1M%2FjsF2ntg%3D%3D 10.1079/NRR200127 19087424
66. BA Williams MW Bosch H Boer MWA Verstegen S Tamminga 2005 An in vitro batch culture method to assess potential fermentability of feed ingredients for monogastric diets Anim Feed Sci Technol 123-124 445 462 10.1016/j.anifeedsci. 2005.04.031
67. G Wu 1998 Intestinal mucosal amino acid catabolism J Nutr 128 1249 1252 1:CAS:528:DyaK1cXltVWlsr8%3D 9687539
68. G Wu 2009 Amino acids: metabolism, functions, and nutrition Amino Acids 37 1 17 10.1007/s00726-009-0269-0 19301095
69. G Wu AG Borbolla DA Knabe 1994 The uptake of glutamine and release of arginine, citrulline and proline by the small intestine of developing pigs J Nutr 124 2437 2444 1:CAS:528:DyaK2MXis1Khtr4%3D 16856325
70. G Wu TL Ott DA Knabe FW Bazer 1999 Amino acid composition of the fetal pig J Nutr 129 1031 1038 1:CAS:528:DyaK1MXivVynsr8%3D 10222396
71. G Wu FW Bazer TA Davis SW Kim P Li JM Rhoads MC Satterfield SB Smith TE Spencer YL Yin 2009 Arginine metabolism and nutrition in growth, health and disease Amino Acids 37 153 168 1:CAS:528:DC%2BD1MXltlemtL0%3D 10.1007/s00726-008-0210-y 19030957
72. FG Yin YL Liu YL Yin XF Kong RL Huang TJ Li GY Wu YQ Hou 2009 Dietary supplementation with Astragalus polysaccharide enhances ileal digestibilities and serum concentrations of amino acids in early weaned piglets Amino Acids 37 263 270 1:CAS:528:DC%2BD1MXotVKis7g%3D 10.1007/s00726-008-0142-6 18622730
73. Zhang J (2009) Isolation and identification of amino acid utilizing bacteria from the porcine small intestine. Thesis, Nanjing Agricultural University, Nanjing, China
74. EG Zoetendal HGHJ Heilig ES Klaassens CCGM Booijink M Kleerebezem H Smidt WM de Vos 2006 Isolation of DNA from bacterial samples of the human gastrointestinal tract Nat Protoc 1 870 873 1:CAS:528:DC%2BD28XhtFOitb7M 10.1038/nprot.2006.142 17406319