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Volumn 7, Issue , 2013, Pages

A novel untargeted metabolomics correlation-based network analysis incorporating human metabolic reconstructions

Author keywords

Cancer; Correlation analysis; Hypoxia; Metabolomics; Network analysis

Indexed keywords

OXYGEN;

EID: 84886083861     PISSN: None     EISSN: 17520509     Source Type: Journal    
DOI: 10.1186/1752-0509-7-107     Document Type: Article
Times cited : (61)

References (35)
  • 3
    • 33748475897 scopus 로고    scopus 로고
    • On the analysis and interpretation of correlations in metabolomic data
    • 10.1093/bib/bbl009, 16772265
    • Steuer R. On the analysis and interpretation of correlations in metabolomic data. Brief Bioinform 2006, 7:151-158. 10.1093/bib/bbl009, 16772265.
    • (2006) Brief Bioinform , vol.7 , pp. 151-158
    • Steuer, R.1
  • 4
    • 84860463899 scopus 로고    scopus 로고
    • Metabolomic analysis of rat serum in streptozotocin-induced diabetes and after treatment with oral triethylenetetramine (TETA)
    • 10.1186/gm334, 3446263, 22546713
    • Ugarte M, Brown M, Hollywood KA, Cooper GJ, Bishop PN, Dunn WB. Metabolomic analysis of rat serum in streptozotocin-induced diabetes and after treatment with oral triethylenetetramine (TETA). Genome Medicine 2012, 4:35. 10.1186/gm334, 3446263, 22546713.
    • (2012) Genome Medicine , vol.4 , pp. 35
    • Ugarte, M.1    Brown, M.2    Hollywood, K.A.3    Cooper, G.J.4    Bishop, P.N.5    Dunn, W.B.6
  • 5
    • 20344365760 scopus 로고    scopus 로고
    • The origin of correlations in metabolomics data
    • Camacho D, de la Fuente A, Mendes P. The origin of correlations in metabolomics data. Metabolomics 2005, 1:53-63.
    • (2005) Metabolomics , vol.1 , pp. 53-63
    • Camacho, D.1    de la Fuente, A.2    Mendes, P.3
  • 7
    • 33846910173 scopus 로고    scopus 로고
    • Global reconstruction of the human metabolic network based on genomic and bibliomic data
    • 10.1073/pnas.0610772104, 1794290, 17267599
    • Duarte NC, Becker SA, Jamshidi N, Thiele I, Mo ML, Vo TD, Srivas R, Palsson BO. Global reconstruction of the human metabolic network based on genomic and bibliomic data. Proc Natl Acad Sci U S A 2007, 104:1777-1782. 10.1073/pnas.0610772104, 1794290, 17267599.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 1777-1782
    • Duarte, N.C.1    Becker, S.A.2    Jamshidi, N.3    Thiele, I.4    Mo, M.L.5    Vo, T.D.6    Srivas, R.7    Palsson, B.O.8
  • 9
    • 34548860112 scopus 로고    scopus 로고
    • The Edinburgh human metabolic network reconstruction and its functional analysis
    • 2013923, 17882155
    • Ma HW, Sorokin A, Mazein A, Selkov A, Selkov E, Demin O, Goryanin I. The Edinburgh human metabolic network reconstruction and its functional analysis. Mol Syst Biol 2007, 3:135. 2013923, 17882155.
    • (2007) Mol Syst Biol , vol.3 , pp. 135
    • Ma, H.W.1    Sorokin, A.2    Mazein, A.3    Selkov, A.4    Selkov, E.5    Demin, O.6    Goryanin, I.7
  • 10
    • 77954791900 scopus 로고    scopus 로고
    • Compartmentalization of the Edinburgh human metabolic network
    • Hao T, Ma H-W, Zhao X-M, Goryanin I. Compartmentalization of the Edinburgh human metabolic network. BMC Bioinforma 2010, 11:393.
    • (2010) BMC Bioinforma , vol.11 , pp. 393
    • Hao, T.1    Ma, H.-W.2    Zhao, X.-M.3    Goryanin, I.4
  • 11
    • 1242319556 scopus 로고    scopus 로고
    • The metabolic world of Escherichia coli is not small
    • 10.1073/pnas.0306458101, 341771, 14757824
    • Arita M. The metabolic world of Escherichia coli is not small. Proc Natl Acad Sci U S A 2004, 101:1543-1547. 10.1073/pnas.0306458101, 341771, 14757824.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 1543-1547
    • Arita, M.1
  • 12
    • 78650373804 scopus 로고    scopus 로고
    • Network medicine: a network-based approach to human disease
    • 10.1038/nrg2918, 3140052, 21164525
    • Barabási A-L, Gulbahce N, Loscalzo J. Network medicine: a network-based approach to human disease. Nat Rev Genet 2011, 12:56-68. 10.1038/nrg2918, 3140052, 21164525.
    • (2011) Nat Rev Genet , vol.12 , pp. 56-68
    • Barabási, A.-L.1    Gulbahce, N.2    Loscalzo, J.3
  • 13
    • 75149148563 scopus 로고    scopus 로고
    • Q's next: the diverse functions of glutamine in metabolism, cell biology and cancer
    • 10.1038/onc.2009.358, 2809806, 19881548
    • DeBerardinis RJ, Cheng T. Q's next: the diverse functions of glutamine in metabolism, cell biology and cancer. Oncogene 2010, 29:313-324. 10.1038/onc.2009.358, 2809806, 19881548.
    • (2010) Oncogene , vol.29 , pp. 313-324
    • DeBerardinis, R.J.1    Cheng, T.2
  • 14
    • 12444279265 scopus 로고
    • Origin of cancer cells
    • 10.1126/science.123.3191.309, 13298683
    • Warburg O. Origin of cancer cells. Science 1956, 123:309-314. 10.1126/science.123.3191.309, 13298683.
    • (1956) Science , vol.123 , pp. 309-314
    • Warburg, O.1
  • 15
    • 68049105076 scopus 로고    scopus 로고
    • Role of hypoxia in the hallmarks of human cancer
    • 10.1002/jcb.22214, 19479945
    • Ruan K, Song G, Ouyang GL. Role of hypoxia in the hallmarks of human cancer. J Cell Biochem 2009, 107:1053-1062. 10.1002/jcb.22214, 19479945.
    • (2009) J Cell Biochem , vol.107 , pp. 1053-1062
    • Ruan, K.1    Song, G.2    Ouyang, G.L.3
  • 16
    • 0036468251 scopus 로고    scopus 로고
    • Metabolic changes detected by in vivo magnetic resonance studies of HEPA-1 wild-type tumors and tumors deficient in hypoxia-inducible factor-1 beta (HIF-1 beta): evidence of an anabolic role for the HIF-1 pathway
    • Griffiths JR, McSheehy PMJ, Robinson SP, Troy H, Chung YL, Leek RD, Williams KJ, Stratford IJ, Harris AL, Stubbs M. Metabolic changes detected by in vivo magnetic resonance studies of HEPA-1 wild-type tumors and tumors deficient in hypoxia-inducible factor-1 beta (HIF-1 beta): evidence of an anabolic role for the HIF-1 pathway. Cancer Res 2002, 62:688-695.
    • (2002) Cancer Res , vol.62 , pp. 688-695
    • Griffiths, J.R.1    McSheehy, P.M.J.2    Robinson, S.P.3    Troy, H.4    Chung, Y.L.5    Leek, R.D.6    Williams, K.J.7    Stratford, I.J.8    Harris, A.L.9    Stubbs, M.10
  • 19
    • 39049186612 scopus 로고    scopus 로고
    • A Gentle Guide to the Analysis of Metabolomic Data Metabolomics. In Volume 358
    • New York: Humana Press, Walker JM
    • Steuer R, Morgenthal K, Weckwerth W, Selbig J. A Gentle Guide to the Analysis of Metabolomic Data Metabolomics. In Volume 358. Methods in Molecular Biology 2007, 105-126. New York: Humana Press, Walker JM.
    • (2007) Methods in Molecular Biology , pp. 105-126
    • Steuer, R.1    Morgenthal, K.2    Weckwerth, W.3    Selbig, J.4
  • 20
    • 33749478922 scopus 로고    scopus 로고
    • Cancer's molecular sweet tooth and the Warburg effect
    • 10.1158/0008-5472.CAN-06-1501, 16982728
    • Kim JW, Dang CV. Cancer's molecular sweet tooth and the Warburg effect. Cancer Res 2006, 66:8927-8930. 10.1158/0008-5472.CAN-06-1501, 16982728.
    • (2006) Cancer Res , vol.66 , pp. 8927-8930
    • Kim, J.W.1    Dang, C.V.2
  • 21
    • 77958492734 scopus 로고    scopus 로고
    • Glutaminolysis: supplying carbon or nitrogen or both for cancer cells?
    • 10.4161/cc.9.19.13302, 20948290
    • Dang CV. Glutaminolysis: supplying carbon or nitrogen or both for cancer cells?. Cell Cycle 2010, 9:3884-3886. 10.4161/cc.9.19.13302, 20948290.
    • (2010) Cell Cycle , vol.9 , pp. 3884-3886
    • Dang, C.V.1
  • 22
    • 0032052077 scopus 로고    scopus 로고
    • Essential fatty acids: molecular and cellular basis of their anti-cancer action and clinical implications
    • 10.1016/S1040-8428(98)00003-1, 9649932
    • Jiang WG, Bryce RP, Horrobin DF. Essential fatty acids: molecular and cellular basis of their anti-cancer action and clinical implications. Crit Rev Oncol Hematol 1998, 27:179-209. 10.1016/S1040-8428(98)00003-1, 9649932.
    • (1998) Crit Rev Oncol Hematol , vol.27 , pp. 179-209
    • Jiang, W.G.1    Bryce, R.P.2    Horrobin, D.F.3
  • 23
    • 0014117948 scopus 로고
    • Glutaminase activities in normal and neoplastic tissues of the rat
    • Knox WE, Tremblay GC, Spanier BB, Friedell GH. Glutaminase activities in normal and neoplastic tissues of the rat. Cancer Res 1967, 27:1456-1458.
    • (1967) Cancer Res , vol.27 , pp. 1456-1458
    • Knox, W.E.1    Tremblay, G.C.2    Spanier, B.B.3    Friedell, G.H.4
  • 26
    • 3342954730 scopus 로고    scopus 로고
    • Glutamine breakdown in rapidly dividing cells: waste or investment?
    • 10.1002/bies.20063, 15221859
    • Aledo JC. Glutamine breakdown in rapidly dividing cells: waste or investment?. Bioessays 2004, 26:778-785. 10.1002/bies.20063, 15221859.
    • (2004) Bioessays , vol.26 , pp. 778-785
    • Aledo, J.C.1
  • 27
    • 68849116797 scopus 로고    scopus 로고
    • Development and performance of a Gas chromatography-time-of-flight mass spectrometry analysis for large-scale nontargeted metabolomic studies of human serum
    • 10.1021/ac9011599, 19606840
    • Begley P, Francis-McIntyre S, Dunn WB, Broadhurst DI, Halsall A, Tseng A, Knowles J, Goodacre R, Kell DB, Consortium H. Development and performance of a Gas chromatography-time-of-flight mass spectrometry analysis for large-scale nontargeted metabolomic studies of human serum. Anal Chem 2009, 81:7038-7046. 10.1021/ac9011599, 19606840.
    • (2009) Anal Chem , vol.81 , pp. 7038-7046
    • Begley, P.1    Francis-McIntyre, S.2    Dunn, W.B.3    Broadhurst, D.I.4    Halsall, A.5    Tseng, A.6    Knowles, J.7    Goodacre, R.8    Kell, D.B.9    Consortium, H.10
  • 28
    • 79959913950 scopus 로고    scopus 로고
    • Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry
    • 10.1038/nprot.2011.335, 21720319
    • Dunn WB, Broadhurst D, Begley P, Zelena E, Francis-McIntyre S, Anderson N, Brown M, Knowles JD, Halsall A, Haselden JN, et al. Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry. Nat Protoc 2011, 6:1060-1083. 10.1038/nprot.2011.335, 21720319.
    • (2011) Nat Protoc , vol.6 , pp. 1060-1083
    • Dunn, W.B.1    Broadhurst, D.2    Begley, P.3    Zelena, E.4    Francis-McIntyre, S.5    Anderson, N.6    Brown, M.7    Knowles, J.D.8    Halsall, A.9    Haselden, J.N.10
  • 31
    • 84952503562 scopus 로고
    • Thirteen ways to look at the correlation coefficient
    • Rodgers JL, Nicewander WA. Thirteen ways to look at the correlation coefficient. Am Stat 1988, 42:59-66.
    • (1988) Am Stat , vol.42 , pp. 59-66
    • Rodgers, J.L.1    Nicewander, W.A.2
  • 34
    • 33646884848 scopus 로고    scopus 로고
    • SBMLToolbox: an SBML toolbox for MATLAB users
    • 10.1093/bioinformatics/btl111, 16574696
    • Keating SM, Bornstein BJ, Finney A, Hucka M. SBMLToolbox: an SBML toolbox for MATLAB users. Bioinformatics 2006, 22:1275-1277. 10.1093/bioinformatics/btl111, 16574696.
    • (2006) Bioinformatics , vol.22 , pp. 1275-1277
    • Keating, S.M.1    Bornstein, B.J.2    Finney, A.3    Hucka, M.4
  • 35
    • 0037316239 scopus 로고    scopus 로고
    • Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms
    • 10.1093/bioinformatics/19.2.270, 12538249
    • Ma H, Zeng A-P. Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms. Bioinformatics 2003, 19:270-277. 10.1093/bioinformatics/19.2.270, 12538249.
    • (2003) Bioinformatics , vol.19 , pp. 270-277
    • Ma, H.1    Zeng, A.-P.2


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