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Volumn 6, Issue 9, 2011, Pages

A differential network approach to exploring differences between biological states: An application to prediabetes

Author keywords

[No Author keywords available]

Indexed keywords

GLUCOSE; LOW DENSITY LIPOPROTEIN; VERY LOW DENSITY LIPOPROTEIN;

EID: 80053202843     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0024702     Document Type: Article
Times cited : (34)

References (32)
  • 1
    • 0038483826 scopus 로고    scopus 로고
    • Emergence of scaling in random networks
    • Barabasi AL, Albert R, (1999) Emergence of scaling in random networks. Science 286 (5439): 509-512.
    • (1999) Science , vol.286 , Issue.5439 , pp. 509-512
    • Barabasi, A.L.1    Albert, R.2
  • 2
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: Understanding the cell's functional organization
    • Barabasi AL, Oltvai ZN, (2004) Network biology: Understanding the cell's functional organization. Nat Rev Genet 5 (2): 101-113.
    • (2004) Nat Rev Genet , vol.5 , Issue.2 , pp. 101-113
    • Barabasi, A.L.1    Oltvai, Z.N.2
  • 3
    • 33748475897 scopus 로고    scopus 로고
    • Review: On the analysis and interpretation of correlations in metabolomic data
    • Steuer R, (2006) Review: On the analysis and interpretation of correlations in metabolomic data. Brief Bioinform 7 (2): 151-158.
    • (2006) Brief Bioinform , vol.7 , Issue.2 , pp. 151-158
    • Steuer, R.1
  • 4
    • 20344365760 scopus 로고    scopus 로고
    • The origin of correlations in metabolomics data
    • Camacho D, de lF, Mendes P, (2005) The origin of correlations in metabolomics data. Metabolomics 1 (1): 53-63.
    • (2005) Metabolomics , vol.1 , Issue.1 , pp. 53-63
    • del Camacho, D.F.1    Mendes, P.2
  • 5
    • 70350560562 scopus 로고    scopus 로고
    • Metabolomics applied to diabetes research: Moving from information to knowledge
    • Bain JR, Stevens RD, Wenner BR, Ilkayeva O, Muoio DM, et al. (2009) Metabolomics applied to diabetes research: Moving from information to knowledge. Diabetes 58 (11): 2429-2443.
    • (2009) Diabetes , vol.58 , Issue.11 , pp. 2429-2443
    • Bain, J.R.1    Stevens, R.D.2    Wenner, B.R.3    Ilkayeva, O.4    Muoio, D.M.5
  • 6
    • 33845231723 scopus 로고    scopus 로고
    • Conservation and evolution of gene coexpression networks in human and chimpanzee brains
    • Oldham MC, Horvath S, Geschwind DH, (2006) Conservation and evolution of gene coexpression networks in human and chimpanzee brains. Proc Natl Acad Sci U S A 103 (47): 17973-17978.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , Issue.47 , pp. 17973-17978
    • Oldham, M.C.1    Horvath, S.2    Geschwind, D.H.3
  • 7
    • 34548442971 scopus 로고    scopus 로고
    • Weighted gene coexpression network analysis strategies applied to mouse weight
    • Fuller TF, Ghazalpour A, Aten JE, Drake TA, Lusis AJ, et al. (2007) Weighted gene coexpression network analysis strategies applied to mouse weight. Mamm Genome 18 (6-7): 463-472.
    • (2007) Mamm Genome , vol.18 , Issue.6-7 , pp. 463-472
    • Fuller, T.F.1    Ghazalpour, A.2    Aten, J.E.3    Drake, T.A.4    Lusis, A.J.5
  • 8
    • 55949083343 scopus 로고    scopus 로고
    • Neuroendocrine and immune network re-modeling in chronic fatigue syndrome: An exploratory analysis
    • Fuite J, Vernon SD, Broderick G, (2008) Neuroendocrine and immune network re-modeling in chronic fatigue syndrome: An exploratory analysis. Genomics 92 (6): 393-399.
    • (2008) Genomics , vol.92 , Issue.6 , pp. 393-399
    • Fuite, J.1    Vernon, S.D.2    Broderick, G.3
  • 9
    • 77950544798 scopus 로고    scopus 로고
    • A statistical framework for differential network analysis from microarray data
    • Gill R, Datta S, Datta S, (2010) A statistical framework for differential network analysis from microarray data. BMC Bioinformatics 11 (1): 95.
    • (2010) BMC Bioinformatics , vol.11 , Issue.1 , pp. 95
    • Gill, R.1    Datta, S.2    Datta, S.3
  • 10
    • 21544456070 scopus 로고    scopus 로고
    • Nuclear magnetic resonance lipoprotein abnormalities in prediabetic subjects in the insulin resistance atherosclerosis study
    • Festa A, Williams K, Hanley AJ, Otvos JD, Goff DC, et al. (2005) Nuclear magnetic resonance lipoprotein abnormalities in prediabetic subjects in the insulin resistance atherosclerosis study. Circulation 111 (25): 3465-3472.
    • (2005) Circulation , vol.111 , Issue.25 , pp. 3465-3472
    • Festa, A.1    Williams, K.2    Hanley, A.J.3    Otvos, J.D.4    Goff, D.C.5
  • 11
    • 58549109632 scopus 로고    scopus 로고
    • Plasma lipoproteins: Genetic influences and clinical implications
    • Hegele RA, (2009) Plasma lipoproteins: Genetic influences and clinical implications. Nat Rev Genet 10 (2): 109-121.
    • (2009) Nat Rev Genet , vol.10 , Issue.2 , pp. 109-121
    • Hegele, R.A.1
  • 12
    • 33747150019 scopus 로고    scopus 로고
    • Complex networks and simple models in biology
    • de Silva E, Stumpf MP, (2005) Complex networks and simple models in biology. J R Soc Interface 2 (5): 419-430.
    • (2005) J R Soc Interface , vol.2 , Issue.5 , pp. 419-430
    • de Silva, E.1    Stumpf, M.P.2
  • 13
    • 78650665228 scopus 로고    scopus 로고
    • Metabonomic, transcriptomic, and genomic variation of a population cohort
    • Inouye M, Kettunen J, Soininen P, Silander K, Ripatti S, et al. (2010) Metabonomic, transcriptomic, and genomic variation of a population cohort. Mol Syst Biol 6: 441.
    • (2010) Mol Syst Biol , vol.6 , pp. 441
    • Inouye, M.1    Kettunen, J.2    Soininen, P.3    Silander, K.4    Ripatti, S.5
  • 14
    • 0035823264 scopus 로고    scopus 로고
    • The small world inside large metabolic networks
    • Wagner A, Fell DA, (2001) The small world inside large metabolic networks. Proc Biol Sci 268 (1478): 1803-1810.
    • (2001) Proc Biol Sci , vol.268 , Issue.1478 , pp. 1803-1810
    • Wagner, A.1    Fell, D.A.2
  • 15
    • 42149194929 scopus 로고    scopus 로고
    • A correlation network approach to metabolic data analysis for tomato fruits
    • Ursem R, Tikunov Y, Bovy A, van Berloo R, van Eeuwijk F, (2008) A correlation network approach to metabolic data analysis for tomato fruits. Euphytica 161 (1): 181-193.
    • (2008) Euphytica , vol.161 , Issue.1 , pp. 181-193
    • Ursem, R.1    Tikunov, Y.2    Bovy, A.3    van Berloo, R.4    van Eeuwijk, F.5
  • 16
    • 0037199968 scopus 로고    scopus 로고
    • Hierarchical organization of modularity in metabolic networks
    • Ravasz E, Somera AL, Mongru DA, Oltvai ZN, Barabasi AL, (2002) Hierarchical organization of modularity in metabolic networks. Science 297 (5586): 1551-1555.
    • (2002) Science , vol.297 , Issue.5586 , pp. 1551-1555
    • Ravasz, E.1    Somera, A.L.2    Mongru, D.A.3    Oltvai, Z.N.4    Barabasi, A.L.5
  • 17
  • 18
    • 12344321571 scopus 로고    scopus 로고
    • Discovery of meaningful associations in genomic data using partial correlation coefficients
    • de la Fuente A, Bing N, Hoeschele I, Mendes P, (2004) Discovery of meaningful associations in genomic data using partial correlation coefficients. Bioinformatics 20 (18): 3565-3574.
    • (2004) Bioinformatics , vol.20 , Issue.18 , pp. 3565-3574
    • de la Fuente, A.1    Bing, N.2    Hoeschele, I.3    Mendes, P.4
  • 19
    • 77951832314 scopus 로고    scopus 로고
    • Lipoprotein particle size and concentration by nuclear magnetic resonance and incident type 2 diabetes in women
    • Mora S, Otvos JD, Rosenson RS, Pradhan A, Buring JE, et al. (2010) Lipoprotein particle size and concentration by nuclear magnetic resonance and incident type 2 diabetes in women. Diabetes 59 (5): 1153-1160.
    • (2010) Diabetes , vol.59 , Issue.5 , pp. 1153-1160
    • Mora, S.1    Otvos, J.D.2    Rosenson, R.S.3    Pradhan, A.4    Buring, J.E.5
  • 20
    • 9244242904 scopus 로고    scopus 로고
    • Screening for type 2 diabetes: report of a WHO/IDF meeting
    • Geneva. WHO/NMH/MN/03.1, World Health Organization
    • World Health Organization (2003) Screening for type 2 diabetes: report of a WHO/IDF meeting. Geneva. WHO/NMH/MN/03.1.
    • (2003)
  • 22
    • 33644827082 scopus 로고    scopus 로고
    • Overproduction of large VLDL particles is driven by increased liver fat content in man
    • Adiels M, Taskinen MR, Packard C, Caslake MJ, Soro-Paavonen A, et al. (2006) Overproduction of large VLDL particles is driven by increased liver fat content in man. Diabetologia 49 (4): 755-765.
    • (2006) Diabetologia , vol.49 , Issue.4 , pp. 755-765
    • Adiels, M.1    Taskinen, M.R.2    Packard, C.3    Caslake, M.J.4    Soro-Paavonen, A.5
  • 23
    • 58149159573 scopus 로고    scopus 로고
    • Genome-wide association analysis of metabolic traits in a birth cohort from a founder population
    • Sabatti C, Service SK, Hartikainen AL, Pouta A, Ripatti S, et al. (2009) Genome-wide association analysis of metabolic traits in a birth cohort from a founder population. Nat Genet 41 (1): 35-46.
    • (2009) Nat Genet , vol.41 , Issue.1 , pp. 35-46
    • Sabatti, C.1    Service, S.K.2    Hartikainen, A.L.3    Pouta, A.4    Ripatti, S.5
  • 24
    • 0012431804 scopus 로고    scopus 로고
    • Report of the expert committee on the diagnosis and classification of diabetes mellitus
    • Expert Committee on the Diagnosis and Classification of Diabetes Mellitus
    • Expert Committee on the Diagnosis and Classification of Diabetes Mellitus (2003) Report of the expert committee on the diagnosis and classification of diabetes mellitus. Diabetes Care 26 (Suppl 1): S5-20.
    • (2003) Diabetes Care , vol.26 , Issue.SUPPL. 1
  • 25
    • 66449135994 scopus 로고    scopus 로고
    • Nuclear magnetic resonance-based metabonomics reveals strong sex effect on plasma metabolism in 17-year-old scandinavians and correlation to retrospective infant plasma parameters
    • Bertram HC, Duus JO, Petersen BO, Hoppe C, Larnkjaer A, et al. (2009) Nuclear magnetic resonance-based metabonomics reveals strong sex effect on plasma metabolism in 17-year-old scandinavians and correlation to retrospective infant plasma parameters. Metabolism 58 (7): 1039-1045.
    • (2009) Metabolism , vol.58 , Issue.7 , pp. 1039-1045
    • Bertram, H.C.1    Duus, J.O.2    Petersen, B.O.3    Hoppe, C.4    Larnkjaer, A.5
  • 26
    • 70349324702 scopus 로고    scopus 로고
    • High-throughput serum NMR metabonomics for cost-effective holistic studies on systemic metabolism
    • Soininen P, Kangas AJ, Würtz P, Tukiainen T, Tynkkynen T, et al. (2009) High-throughput serum NMR metabonomics for cost-effective holistic studies on systemic metabolism. Analyst 134 (9): 1781-1785.
    • (2009) Analyst , vol.134 , Issue.9 , pp. 1781-1785
    • Soininen, P.1    Kangas, A.J.2    Würtz, P.3    Tukiainen, T.4    Tynkkynen, T.5
  • 27
    • 34249849281 scopus 로고    scopus 로고
    • A novel bayesian approach to quantify clinical variables and to determine their spectroscopic counterparts in 1H NMR metabonomic data
    • Vehtari A, Mäkinen VP, Soininen P, Ingman P, Mäkelä SM, et al. (2007) A novel bayesian approach to quantify clinical variables and to determine their spectroscopic counterparts in 1H NMR metabonomic data. BMC Bioinformatics 8 (Suppl 2): S8.
    • (2007) BMC Bioinformatics , vol.8 , Issue.SUPPL. 2
    • Vehtari, A.1    Mäkinen, V.P.2    Soininen, P.3    Ingman, P.4    Mäkelä, S.M.5
  • 28
    • 70350489596 scopus 로고    scopus 로고
    • Estimation of VLDL, IDL, LDL, HDL2, apoA-I, and apoB from the friedewald inputs-apoB and IDL, but not LDL, are associated with mortality in type 1 diabetes
    • Niemi J, Mäkinen VP, Heikkonen J, Tenkanen L, Hiltunen Y, et al. (2009) Estimation of VLDL, IDL, LDL, HDL2, apoA-I, and apoB from the friedewald inputs-apoB and IDL, but not LDL, are associated with mortality in type 1 diabetes. Ann Med 41 (6): 451-461.
    • (2009) Ann Med , vol.41 , Issue.6 , pp. 451-461
    • Niemi, J.1    Mäkinen, V.P.2    Heikkonen, J.3    Tenkanen, L.4    Hiltunen, Y.5
  • 29
    • 12344321571 scopus 로고    scopus 로고
    • Discovery of meaningful associations in genomic data using partial correlation coefficients
    • de la Fuente A, Bing N, Hoeschele I, Mendes P, (2004) Discovery of meaningful associations in genomic data using partial correlation coefficients. Bioinformatics 20 (18): 3565-3574.
    • (2004) Bioinformatics , vol.20 , Issue.18 , pp. 3565-3574
    • de la Fuente, A.1    Bing, N.2    Hoeschele, I.3    Mendes, P.4
  • 30
    • 27844521293 scopus 로고    scopus 로고
    • A shrinkage approach to large-scale covariance matrix estimation and implications for functional genomics
    • Schäfer J, Strimmer K, (2005) A shrinkage approach to large-scale covariance matrix estimation and implications for functional genomics. Statistical Applications in Genetics and Molecular Biology 4.
    • (2005) Statistical Applications in Genetics and Molecular Biology , vol.4
    • Schäfer, J.1    Strimmer, K.2
  • 31
    • 0041841552 scopus 로고    scopus 로고
    • Improved estimation of the covariance matrix of stock returns with an application to portfolio selection
    • Ledoit O, Wolf M, (2003) Improved estimation of the covariance matrix of stock returns with an application to portfolio selection. Journal of Empirical Finance 10 (5): 603-621.
    • (2003) Journal of Empirical Finance , vol.10 , Issue.5 , pp. 603-621
    • Ledoit, O.1    Wolf, M.2
  • 32
    • 33747150019 scopus 로고    scopus 로고
    • Complex networks and simple models in biology
    • de Silva E, Stumpf MP, (2005) Complex networks and simple models in biology. J R Soc Interface 2 (5): 419-430.
    • (2005) J R Soc Interface , vol.2 , Issue.5 , pp. 419-430
    • de Silva, E.1    Stumpf, M.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.