-
1
-
-
72949117233
-
The immune response during acute HIV-1 infection: clues for vaccine development
-
doi:10.1038/nri2674
-
McMichael AJ, Borrow P, Tomaras GD, Goonetilleke N, Haynes BF. The immune response during acute HIV-1 infection: clues for vaccine development. Nat Rev Immunol (2009) 10(1):11. doi:10.1038/nri2674.
-
(2009)
Nat Rev Immunol
, vol.10
, Issue.1
, pp. 11
-
-
McMichael, A.J.1
Borrow, P.2
Tomaras, G.D.3
Goonetilleke, N.4
Haynes, B.F.5
-
2
-
-
20244386270
-
Rapid viral escape at an immunodominant simian-human immunodeficiency virus cytotoxic T-lymphocyte epitope exacts a dramatic fitness cost
-
doi:10.1128/JVI.79.9.5721-5731.2005
-
Fernandez CS, Stratov I, De Rose R, Walsh K, Dale CJ, Smith MZ, et al. Rapid viral escape at an immunodominant simian-human immunodeficiency virus cytotoxic T-lymphocyte epitope exacts a dramatic fitness cost. J Virol (2005) 79(9):5721-31. doi:10.1128/JVI.79.9.5721-5731.2005.
-
(2005)
J Virol
, vol.79
, Issue.9
, pp. 5721-5731
-
-
Fernandez, C.S.1
Stratov, I.2
De Rose, R.3
Walsh, K.4
Dale, C.J.5
Smith, M.Z.6
-
3
-
-
33845756711
-
Rapid reversion of sequence polymorphisms dominates early human immunodeficiency virus type 1 evolution
-
doi:10.1128/JVI.01231-06
-
Li B, Gladden AD, Altfeld M, Kaldor JM, Cooper DA, Kelleher AD, et al. Rapid reversion of sequence polymorphisms dominates early human immunodeficiency virus type 1 evolution. J Virol (2007) 81(1):193-201. doi:10.1128/JVI.01231-06.
-
(2007)
J Virol
, vol.81
, Issue.1
, pp. 193-201
-
-
Li, B.1
Gladden, A.D.2
Altfeld, M.3
Kaldor, J.M.4
Cooper, D.A.5
Kelleher, A.D.6
-
4
-
-
80055017715
-
Fitness costs and diversity of the cytotoxic T lymphocyte (CTL) response determine the rate of CTL escape during acute and chronic phases of HIV infection
-
doi:10.1128/JVI.00655-11
-
Ganusov VV, Goonetilleke N, Liu MKP, Ferrari G, Shaw GM, McMichael AJ, et al. Fitness costs and diversity of the cytotoxic T lymphocyte (CTL) response determine the rate of CTL escape during acute and chronic phases of HIV infection. J Virol (2011) 85(20):10518-28. doi:10.1128/JVI.00655-11.
-
(2011)
J Virol
, vol.85
, Issue.20
, pp. 10518-28
-
-
Ganusov, V.V.1
Goonetilleke, N.2
Liu, M.K.P.3
Ferrari, G.4
Shaw, G.M.5
McMichael, A.J.6
-
5
-
-
84875675627
-
CTL escape and viral fitness in HIV/SIV infection
-
doi:10.3389/fmicb.2011.00267
-
Seki S, Matano T. CTL escape and viral fitness in HIV/SIV infection. Front Microbiol (2012) 2:267. doi:10.3389/fmicb.2011.00267.
-
(2012)
Front Microbiol
, vol.2
, pp. 267
-
-
Seki, S.1
Matano, T.2
-
6
-
-
33645768069
-
Inefficient cytotoxic T lymphocyte-mediated killing of HIV-1-infected cells in vivo
-
doi:10.1371/journal.pbio.0040090
-
Asquith B, Edwards CTT, Lipsitch M, McLean AR. Inefficient cytotoxic T lymphocyte-mediated killing of HIV-1-infected cells in vivo. PLoS Biol (2006) 4(4):e90. doi:10.1371/journal.pbio.0040090.
-
(2006)
PLoS Biol
, vol.4
, Issue.4
-
-
Asquith, B.1
Edwards, C.T.T.2
Lipsitch, M.3
McLean, A.R.4
-
7
-
-
67449147145
-
The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection
-
doi:10.1084/jem.20090365
-
Goonetilleke N, Liu MKP, Salazar-Gonzalez JF, Ferrari G, Giorgi E, Ganusov VV, et al. The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection. J Exp Med (2009) 206(6):1253-72. doi:10.1084/jem.20090365.
-
(2009)
J Exp Med
, vol.206
, Issue.6
, pp. 1253-1272
-
-
Goonetilleke, N.1
Liu, M.K.P.2
Salazar-Gonzalez, J.F.3
Ferrari, G.4
Giorgi, E.5
Ganusov, V.V.6
-
8
-
-
66049139947
-
Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection
-
doi:10.1084/jem.20090378
-
Salazar-Gonzalez JF, Salazar MG, Keele BF, Learn GH, Giorgi EE, Li H, et al. Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection. J Exp Med (2009) 206(6):1273-89. doi:10.1084/jem.20090378.
-
(2009)
J Exp Med
, vol.206
, Issue.6
, pp. 1273-1289
-
-
Salazar-Gonzalez, J.F.1
Salazar, M.G.2
Keele, B.F.3
Learn, G.H.4
Giorgi, E.E.5
Li, H.6
-
9
-
-
0029967721
-
HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time
-
doi:10.1126/science.271.5255.1582
-
Perelson AS, Neumann AU, Markowitz M, Leonard JM, Ho DD. HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time. Science (1996) 271(5255):1582-6. doi:10.1126/science.271.5255.1582.
-
(1996)
Science
, vol.271
, Issue.5255
, pp. 1582-1586
-
-
Perelson, A.S.1
Neumann, A.U.2
Markowitz, M.3
Leonard, J.M.4
Ho, D.D.5
-
10
-
-
0029075130
-
Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase
-
Mansky LM, Temin HM. Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase. J Virol (1995) 69(8):5087-94.
-
(1995)
J Virol
, vol.69
, Issue.8
, pp. 5087-5094
-
-
Mansky, L.M.1
Temin, H.M.2
-
11
-
-
84874499594
-
Mathematical modeling of escape of HIV from cytotoxic T lymphocyte responses
-
doi:10.1088/1742-5468/2013/01/P01010
-
Ganusov VV, Neher RA, Perelson AS. Mathematical modeling of escape of HIV from cytotoxic T lymphocyte responses. J Stat Mech (2013) 2013(1):P01010. doi:10.1088/1742-5468/2013/01/P01010.
-
(2013)
J Stat Mech
, vol.2013
, Issue.1
-
-
Ganusov, V.V.1
Neher, R.A.2
Perelson, A.S.3
-
12
-
-
84879772304
-
Computational inference methods for selective sweeps arising in acute HIV infection
-
doi:10.1534/genetics.113.150862
-
Leviyang S. Computational inference methods for selective sweeps arising in acute HIV infection. Genetics (2013) 194:737-52. doi:10.1534/genetics.113.150862.
-
(2013)
Genetics
, vol.194
, pp. 737-752
-
-
Leviyang, S.1
-
13
-
-
76749139978
-
Recombination rate and selection strength in HIV intra-patient evolution
-
doi:10.1371/journal.pcbi.1000660
-
Neher RA, Leitner T. Recombination rate and selection strength in HIV intra-patient evolution. PLoS Comput Biol (2010) 6(1):e1000660. doi:10.1371/journal.pcbi.1000660.
-
(2010)
PLoS Comput Biol
, vol.6
, Issue.1
-
-
Neher, R.A.1
Leitner, T.2
-
14
-
-
79955043851
-
Estimate of effective recombination rate and average selection coefficient for HIV in chronic infection
-
doi:10.1073/pnas.1102036108
-
Batorsky R, Kearney MF, Palmer SE, Maldarelli F, Rouzine IM, Coffin JM. Estimate of effective recombination rate and average selection coefficient for HIV in chronic infection. Proc Natl Acad Sci U S A (2011) 108(14):5661-6. doi:10.1073/pnas.1102036108.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, Issue.14
, pp. 5661-5666
-
-
Batorsky, R.1
Kearney, M.F.2
Palmer, S.E.3
Maldarelli, F.4
Rouzine, I.M.5
Coffin, J.M.6
-
15
-
-
84858212487
-
The dynamics of HIV-1 adaptation in early infection
-
doi:10.1534/genetics.111.136366
-
da Silva J. The dynamics of HIV-1 adaptation in early infection. Genetics (2012) 190(3):1087-99. doi:10.1534/genetics.111.136366.
-
(2012)
Genetics
, vol.190
, Issue.3
, pp. 1087-1099
-
-
da Silva, J.1
-
16
-
-
44649102135
-
Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection
-
doi:10.1073/pnas.0802203105
-
Keele BF, Giorgi EE, Salazar-Gonzalez JF, Decker JM, Pham KT, Salazar MG, et al. Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection. Proc Natl Acad Sci U S A (2008) 105(21):7552-7. doi:10.1073/pnas.0802203105.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, Issue.21
, pp. 7552-7557
-
-
Keele, B.F.1
Giorgi, E.E.2
Salazar-Gonzalez, J.F.3
Decker, J.M.4
Pham, K.T.5
Salazar, M.G.6
-
17
-
-
77957901912
-
Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing
-
doi:10.1371/journal.pone.0012303
-
Fischer W, Ganusov VV, Giorgi EE, Hraber PT, Keele BF, Leitner T, et al. Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing. PLoS ONE (2010) 5(8):e12303. doi:10.1371/journal.pone.0012303.
-
(2010)
PLoS ONE
, vol.5
, Issue.8
-
-
Fischer, W.1
Ganusov, V.V.2
Giorgi, E.E.3
Hraber, P.T.4
Keele, B.F.5
Leitner, T.6
-
18
-
-
84861214061
-
Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection
-
doi:10.1371/journal.ppat.1002529
-
Henn MR, Boutwell CL, Charlebois P, Lennon NJ, Power KA, Macalalad AR, et al. Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection. PLoS Pathog (2012) 8(3):e1002529. doi:10.1371/journal.ppat.1002529.
-
(2012)
PLoS Pathog
, vol.8
, Issue.3
-
-
Henn, M.R.1
Boutwell, C.L.2
Charlebois, P.3
Lennon, N.J.4
Power, K.A.5
Macalalad, A.R.6
-
19
-
-
41949138131
-
CD4+ target cell availability determines the dynamics of immune escape and reversion in vivo
-
doi:10.1128/JVI.02552-07
-
Petravic J, Loh L, Kent SJ, Davenport MP. CD4+ target cell availability determines the dynamics of immune escape and reversion in vivo. J Virol (2008) 82(8):4091-101. doi:10.1128/JVI.02552-07.
-
(2008)
J Virol
, vol.82
, Issue.8
, pp. 4091-4101
-
-
Petravic, J.1
Loh, L.2
Kent, S.J.3
Davenport, M.P.4
-
20
-
-
33645772992
-
Estimating costs and benefits of CTL escape mutations in SIV/HIV infection
-
doi:10.1371/journal.pcbi.0020024
-
Ganusov VV, De Boer RJ. Estimating costs and benefits of CTL escape mutations in SIV/HIV infection. PLoS Comput Biol (2006) 2(3):e24. doi:10.1371/journal.pcbi.0020024.
-
(2006)
PLoS Comput Biol
, vol.2
, Issue.3
-
-
Ganusov, V.V.1
De Boer, R.J.2
-
21
-
-
1642447695
-
Dynamics of HIV-1 recombination in its natural target cells
-
doi:10.1073/pnas.0306764101
-
Levy DN, Aldrovandi GM, Kutsch O, Shaw GM. Dynamics of HIV-1 recombination in its natural target cells. Proc Natl Acad Sci U S A (2004) 101(12):4204-9. doi:10.1073/pnas.0306764101.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, Issue.12
, pp. 4204-4209
-
-
Levy, D.N.1
Aldrovandi, G.M.2
Kutsch, O.3
Shaw, G.M.4
-
22
-
-
84870840869
-
FFPopSim: an efficient forward simulation package for the evolution of large populations
-
doi:10.1093/bioinformatics/bts633
-
Zanini F, Neher RA. FFPopSim: an efficient forward simulation package for the evolution of large populations. Bioinformatics (2012) 28(24):3332-3. doi:10.1093/bioinformatics/bts633.
-
(2012)
Bioinformatics
, vol.28
, Issue.24
, pp. 3332-3333
-
-
Zanini, F.1
Neher, R.A.2
-
23
-
-
0037385686
-
A novel antiviral intervention results in more accurate assessment of human immunodeficiency virus type 1 replication dynamics and T-cell decay in vivo
-
doi:10.1128/JVI.77.8.5037-5038.2003
-
Markowitz M, Louie M, Hurley A, Sun E, Di Mascio M, Perelson AS, et al. A novel antiviral intervention results in more accurate assessment of human immunodeficiency virus type 1 replication dynamics and T-cell decay in vivo. J Virol (2003) 77(8):5037-8. doi:10.1128/JVI.77.8.5037-5038.2003.
-
(2003)
J Virol
, vol.77
, Issue.8
, pp. 5037-5038
-
-
Markowitz, M.1
Louie, M.2
Hurley, A.3
Sun, E.4
Di Mascio, M.5
Perelson, A.S.6
-
24
-
-
84873503481
-
Approximate Bayesian computation
-
doi:10.1371/journal.pcbi.1002803
-
Sunnker M, Busetto AG, Numminen E, Corander J, Foll M, Dessimoz C. Approximate Bayesian computation. PLoS Comput Biol (2013) 9(1):e1002803. doi:10.1371/journal.pcbi.1002803.
-
(2013)
PLoS Comput Biol
, vol.9
, Issue.1
-
-
Sunnker, M.1
Busetto, A.G.2
Numminen, E.3
Corander, J.4
Foll, M.5
Dessimoz, C.6
-
25
-
-
64549130616
-
On the elimination of nuisance parameters
-
doi:10.1080/01621459.1977.10481002
-
Basu D. On the elimination of nuisance parameters. J Am Stat Assoc (1977) 72(358):355-66. doi:10.1080/01621459.1977.10481002.
-
(1977)
J Am Stat Assoc
, vol.72
, Issue.358
, pp. 355-366
-
-
Basu, D.1
-
26
-
-
0029086332
-
Modeling and optimization of populations subject to time-dependent mutation
-
doi:10.1073/pnas.92.18.8219
-
Kepler TB, Perelson AS. Modeling and optimization of populations subject to time-dependent mutation. Proc Natl Acad Sci U S A (1995) 92(18):8219-23. doi:10.1073/pnas.92.18.8219.
-
(1995)
Proc Natl Acad Sci U S A
, vol.92
, Issue.18
, pp. 8219-8223
-
-
Kepler, T.B.1
Perelson, A.S.2
-
27
-
-
33847314378
-
Beneficial mutation selection balance and the effect of linkage on positive selection
-
doi:10.1534/genetics.106.067678
-
Desai MM, Fisher DS. Beneficial mutation selection balance and the effect of linkage on positive selection. Genetics (2007) 176(3):1759-98. doi:10.1534/genetics.106.067678.
-
(2007)
Genetics
, vol.176
, Issue.3
, pp. 1759-1798
-
-
Desai, M.M.1
Fisher, D.S.2
-
28
-
-
0028952146
-
HIV population dynamics in vivo: implications for genetic variation, pathogenesis, and therapy
-
doi:10.1126/science.7824947
-
Coffin JM. HIV population dynamics in vivo: implications for genetic variation, pathogenesis, and therapy. Science (1995) 267(5197):483-9. doi:10.1126/science.7824947.
-
(1995)
Science
, vol.267
, Issue.5197
, pp. 483-489
-
-
Coffin, J.M.1
-
29
-
-
0031301825
-
Dynamics of HIV-1 and CD4+ lymphocytes in vivo
-
Perelson AS, Essunger P, Ho DD. Dynamics of HIV-1 and CD4+ lymphocytes in vivo. AIDS (1997) 11(Suppl A):S17-24.
-
(1997)
AIDS
, vol.11
, Issue.SUPPL. A
-
-
Perelson, A.S.1
Essunger, P.2
Ho, D.D.3
-
30
-
-
84870332463
-
Stochastic effects are important in intrahost HIV evolution even when viral loads are high
-
doi:10.1073/pnas.1206940109
-
Read EL, Tovo-Dwyer AA, Chakraborty AK. Stochastic effects are important in intrahost HIV evolution even when viral loads are high. Proc Natl Acad Sci U S A (2012) 109(48):19727-32. doi:10.1073/pnas.1206940109.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, Issue.48
, pp. 19727-32
-
-
Read, E.L.1
Tovo-Dwyer, A.A.2
Chakraborty, A.K.3
-
31
-
-
67349200668
-
The rate at which asexual populations cross fitness valleys
-
doi:10.1016/j.tpb.2009.02.006
-
Weissman DB, Desai MM, Fisher DS, Feldman MW. The rate at which asexual populations cross fitness valleys. Theor Popul Biol (2009) 75(4):286-300. doi:10.1016/j.tpb.2009.02.006.
-
(2009)
Theor Popul Biol
, vol.75
, Issue.4
, pp. 286-300
-
-
Weissman, D.B.1
Desai, M.M.2
Fisher, D.S.3
Feldman, M.W.4
-
32
-
-
80051478113
-
Genetic draft and quasi-neutrality in large facultatively sexual populations
-
doi:10.1534/genetics.111.128876
-
Neher RA, Shraiman BI. Genetic draft and quasi-neutrality in large facultatively sexual populations. Genetics (2011) 188:975-96. doi:10.1534/genetics.111.128876.
-
(2011)
Genetics
, vol.188
, pp. 975-996
-
-
Neher, R.A.1
Shraiman, B.I.2
-
33
-
-
10544241554
-
Quantitative image analysis of HIV-1 infection in lymphoid tissue
-
doi:10.1126/science.274.5289.985
-
Haase AT, Henry K, Zupancic M, Sedgewick G, Faust RA, Melroe H, et al. Quantitative image analysis of HIV-1 infection in lymphoid tissue. Science (1996) 274(5289):985-9. doi:10.1126/science.274.5289.985.
-
(1996)
Science
, vol.274
, Issue.5289
, pp. 985-989
-
-
Haase, A.T.1
Henry, K.2
Zupancic, M.3
Sedgewick, G.4
Faust, R.A.5
Melroe, H.6
-
34
-
-
0036838722
-
Selection for human immunodeficiency virus type 1 recombinants in a patient with rapid progression to AIDS
-
doi:10.1128/JVI.76.21.10674-10684.2002
-
Liu S-L, Mittler JE, Nickle DC, Mulvania TM, Shriner D, Rodrigo AG, et al. Selection for human immunodeficiency virus type 1 recombinants in a patient with rapid progression to AIDS. J Virol (2002) 76(21):10674-84. doi:10.1128/JVI.76.21.10674-10684.2002.
-
(2002)
J Virol
, vol.76
, Issue.21
, pp. 10674-84
-
-
Liu, S.-L.1
Mittler, J.E.2
Nickle, D.C.3
Mulvania, T.M.4
Shriner, D.5
Rodrigo, A.G.6
-
35
-
-
59649126954
-
In vivo fitness cost of the m184v mutation in multidrug-resistant human immunodeficiency virus type 1 in the absence of lamivudine
-
doi:10.1128/JVI.02154-08
-
Paredes R, Sagar M, Marconi VC, Hoh R, Martin JN, Parkin NT, et al. In vivo fitness cost of the m184v mutation in multidrug-resistant human immunodeficiency virus type 1 in the absence of lamivudine. J Virol (2009) 83(4):2038-43. doi:10.1128/JVI.02154-08.
-
(2009)
J Virol
, vol.83
, Issue.4
, pp. 2038-2043
-
-
Paredes, R.1
Sagar, M.2
Marconi, V.C.3
Hoh, R.4
Martin, J.N.5
Parkin, N.T.6
-
36
-
-
0037159043
-
Procedures for reliable estimation of viral fitness from time-series data
-
doi:10.1098/rspb.2002.2097
-
Bonhoeffer S, Barbour AD, De Boer RJ. Procedures for reliable estimation of viral fitness from time-series data. Proc Biol Sci (2002) 269(1503):1887-93. doi:10.1098/rspb.2002.2097.
-
(2002)
Proc Biol Sci
, vol.269
, Issue.1503
, pp. 1887-1893
-
-
Bonhoeffer, S.1
Barbour, A.D.2
De Boer, R.J.3
-
37
-
-
34547544527
-
In vivo CD8+ T cell control of immunodeficiency virus infection in humans and macaques
-
doi:10.1073/pnas.0700666104
-
Asquith B, McLean AR. In vivo CD8+ T cell control of immunodeficiency virus infection in humans and macaques. Proc Natl Acad Sci U S A (2007) 104(15):6365-70. doi:10.1073/pnas.0700666104.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, Issue.15
, pp. 6365-6370
-
-
Asquith, B.1
McLean, A.R.2
-
38
-
-
56449130305
-
Estimating the impact of vaccination on acute simian-human immunodeficiency virus/simian immunodeficiency virus infections
-
doi:10.1128/JVI.01596-08
-
Petravic J, Ribeiro RM, Casimiro DR, Mattapallil JJ, Roederer M, Shiver JW, et al. Estimating the impact of vaccination on acute simian-human immunodeficiency virus/simian immunodeficiency virus infections. J Virol (2008) 82(23):11589-98. doi:10.1128/JVI.01596-08.
-
(2008)
J Virol
, vol.82
, Issue.23
, pp. 11589-98
-
-
Petravic, J.1
Ribeiro, R.M.2
Casimiro, D.R.3
Mattapallil, J.J.4
Roederer, M.5
Shiver, J.W.6
-
39
-
-
79960569795
-
Majority of CD4+ T cells from peripheral blood of HIV-1-infected individuals contain only one HIV DNA molecule
-
doi:10.1073/pnas.1107729108
-
Josefsson L, King MS, Makitalo B, Brännström J, Shao W, Maldarelli F, et al. Majority of CD4+ T cells from peripheral blood of HIV-1-infected individuals contain only one HIV DNA molecule. Proc Natl Acad Sci U S A (2011) 108(27):11199-204. doi:10.1073/pnas.1107729108.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, Issue.27
, pp. 11199-204
-
-
Josefsson, L.1
King, M.S.2
Makitalo, B.3
Brännström, J.4
Shao, W.5
Maldarelli, F.6
-
40
-
-
84859086320
-
A method to infer positive selection from marker dynamics in an asexual population
-
doi:10.1093/bioinformatics/btr722
-
Illingworth CJR, Mustonen V. A method to infer positive selection from marker dynamics in an asexual population. Bioinformatics (2012) 28(6):831-7. doi:10.1093/bioinformatics/btr722.
-
(2012)
Bioinformatics
, vol.28
, Issue.6
, pp. 831-837
-
-
Illingworth, C.J.R.1
Mustonen, V.2
-
41
-
-
84869234001
-
Ultrasensitive allele-specific PCR reveals rare preexisting drug-resistant variants and a large replicating virus population in macaques infected with a simian immunodeficiency virus containing human immunodeficiency virus reverse transcriptase
-
doi:10.1128/JVI.01963-12
-
Boltz VF, Ambrose Z, Kearney MF, Shao W, Ramani VNK, Maldarelli F, et al. Ultrasensitive allele-specific PCR reveals rare preexisting drug-resistant variants and a large replicating virus population in macaques infected with a simian immunodeficiency virus containing human immunodeficiency virus reverse transcriptase. J Virol (2012) 86(23):12525-30. doi:10.1128/JVI.01963-12.
-
(2012)
J Virol
, vol.86
, Issue.23
, pp. 12525-30
-
-
Boltz, V.F.1
Ambrose, Z.2
Kearney, M.F.3
Shao, W.4
Ramani, V.N.K.5
Maldarelli, F.6
-
42
-
-
84873830139
-
Vertical T cell immunodominance and epitope entropy determine HIV-1 escape
-
doi:10.1172/JCI65330
-
Liu MKP, Hawkins N, Ritchie AJ, Ganusov VV, Whale V, Brackenridge S, et al. Vertical T cell immunodominance and epitope entropy determine HIV-1 escape. J Clin Invest (2013) 123(1):380-93. doi:10.1172/JCI65330.
-
(2013)
J Clin Invest
, vol.123
, Issue.1
, pp. 380-393
-
-
Liu, M.K.P.1
Hawkins, N.2
Ritchie, A.J.3
Ganusov, V.V.4
Whale, V.5
Brackenridge, S.6
-
43
-
-
34247500374
-
Python for scientific computing
-
doi:10.1109/MCSE.2007.58
-
Oliphant T. Python for scientific computing. Comput Sci Eng (2007) 9(3):10-20. doi:10.1109/MCSE.2007.58.
-
(2007)
Comput Sci Eng
, vol.9
, Issue.3
, pp. 10-20
-
-
Oliphant, T.1
|