메뉴 건너뛰기




Volumn 280, Issue 16, 2013, Pages 3944-3951

Comparative analysis of known miRNAs across platyhelminths

Author keywords

miRNA; miRNA cluster; miRNA locus; platyhelminth; rearrangement

Indexed keywords

MICRORNA; MICRORNA 124; MICRORNA 2A; MICRORNA 61; MICRORNA 8; MICRORNA 9; UNCLASSIFIED DRUG; HELMINTH DNA; HELMINTH RNA;

EID: 84885930235     PISSN: 1742464X     EISSN: 17424658     Source Type: Journal    
DOI: 10.1111/febs.12395     Document Type: Article
Times cited : (33)

References (37)
  • 1
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • Bartel DP, (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116, 281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 2
    • 1842816517 scopus 로고    scopus 로고
    • Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways
    • Lee YS, Nakahara K, Pham JW, Kim K, He Z, Sontheimer EJ, &, Carthew RW, (2004) Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways. Cell 117, 69-81.
    • (2004) Cell , vol.117 , pp. 69-81
    • Lee, Y.S.1    Nakahara, K.2    Pham, J.W.3    Kim, K.4    He, Z.5    Sontheimer, E.J.6    Carthew, R.W.7
  • 4
    • 34447097693 scopus 로고    scopus 로고
    • Intronic microRNA precursors that bypass Drosha processing
    • Ruby JG, Jan CH, &, Bartel DP, (2007) Intronic microRNA precursors that bypass Drosha processing. Nature 448, 83-86.
    • (2007) Nature , vol.448 , pp. 83-86
    • Ruby, J.G.1    Jan, C.H.2    Bartel, D.P.3
  • 6
    • 73649109602 scopus 로고    scopus 로고
    • A mammalian herpesvirus uses noncanonical expression and processing mechanisms to generate viral microRNAs
    • Bogerd HP, Karnowski HW, Cai X, Shin J, Pohlers M, &, Cullen BR, (2010) A mammalian herpesvirus uses noncanonical expression and processing mechanisms to generate viral microRNAs. Mol Cell 37, 135-142.
    • (2010) Mol Cell , vol.37 , pp. 135-142
    • Bogerd, H.P.1    Karnowski, H.W.2    Cai, X.3    Shin, J.4    Pohlers, M.5    Cullen, B.R.6
  • 7
    • 57149094023 scopus 로고    scopus 로고
    • SnoRNA, a novel precursor of microRNA in Giardia lamblia
    • Saraiya AA, &, Wang CC, (2008) snoRNA, a novel precursor of microRNA in Giardia lamblia. PLoS Pathog 4, e1000224.
    • (2008) PLoS Pathog , vol.4
    • Saraiya, A.A.1    Wang, C.C.2
  • 8
    • 33344477448 scopus 로고    scopus 로고
    • Genomics of microRNA
    • Kim VN, &, Nam JW, (2006) Genomics of microRNA. Trends Genet 22, 165-173.
    • (2006) Trends Genet , vol.22 , pp. 165-173
    • Kim, V.N.1    Nam, J.W.2
  • 9
    • 60149095444 scopus 로고    scopus 로고
    • Most mammalian mRNAs are conserved targets of microRNAs
    • Friedman RC, Farh KK, Burge CB, &, Bartel DP, (2009) Most mammalian mRNAs are conserved targets of microRNAs. Genome Res 19, 92-105.
    • (2009) Genome Res , vol.19 , pp. 92-105
    • Friedman, R.C.1    Farh, K.K.2    Burge, C.B.3    Bartel, D.P.4
  • 11
    • 79960075244 scopus 로고    scopus 로고
    • MicroRNA-9: Functional evolution of a conserved small regulatory RNA
    • Yuva-Aydemir Y, Simkin A, Gascon E, &, Gao FB, (2011) MicroRNA-9: functional evolution of a conserved small regulatory RNA. RNA Biol 8, 557-564.
    • (2011) RNA Biol , vol.8 , pp. 557-564
    • Yuva-Aydemir, Y.1    Simkin, A.2    Gascon, E.3    Gao, F.B.4
  • 12
    • 0042814908 scopus 로고    scopus 로고
    • Expression of the 22 nucleotide let-7 heterochronic RNA throughout the Metazoa: A role in life history evolution?
    • Pasquinelli AE, McCoy A, Jimenez E, Salo E, Ruvkun G, Martindale MQ, &, Baguna J, (2003) Expression of the 22 nucleotide let-7 heterochronic RNA throughout the Metazoa: a role in life history evolution? Evol Dev 5, 372-378.
    • (2003) Evol Dev , vol.5 , pp. 372-378
    • Pasquinelli, A.E.1    McCoy, A.2    Jimenez, E.3    Salo, E.4    Ruvkun, G.5    Martindale, M.Q.6    Baguna, J.7
  • 13
    • 34548539200 scopus 로고    scopus 로고
    • Phylogenetic distribution of microRNAs supports the basal position of acoel flatworms and the polyphyly of Platyhelminthes
    • Sempere LF, Martinez P, Cole C, Baguna J, &, Peterson KJ, (2007) Phylogenetic distribution of microRNAs supports the basal position of acoel flatworms and the polyphyly of Platyhelminthes. Evol Dev 9, 409-415.
    • (2007) Evol Dev , vol.9 , pp. 409-415
    • Sempere, L.F.1    Martinez, P.2    Cole, C.3    Baguna, J.4    Peterson, K.J.5
  • 15
    • 58149202186 scopus 로고    scopus 로고
    • Identification and characterization of novel microRNAs from Schistosoma japonicum
    • Xue X, Sun J, Zhang Q, Wang Z, Huang Y, &, Pan W, (2008) Identification and characterization of novel microRNAs from Schistosoma japonicum. PLoS One 3, e4034.
    • (2008) PLoS One , vol.3
    • Xue, X.1    Sun, J.2    Zhang, Q.3    Wang, Z.4    Huang, Y.5    Pan, W.6
  • 16
    • 77949526665 scopus 로고    scopus 로고
    • Genome-wide identification of Schistosoma japonicum microRNAs using a deep-sequencing approach
    • Huang J, Hao P, Chen H, Hu W, Yan Q, Liu F, &, Han ZG, (2009) Genome-wide identification of Schistosoma japonicum microRNAs using a deep-sequencing approach. PLoS One 4, e8206.
    • (2009) PLoS One , vol.4
    • Huang, J.1    Hao, P.2    Chen, H.3    Hu, W.4    Yan, Q.5    Liu, F.6    Han, Z.G.7
  • 17
    • 79951809730 scopus 로고    scopus 로고
    • Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes
    • Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, &, Rosenzvit M, (2011) Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes. Int J Parasitol 41, 439-448.
    • (2011) Int J Parasitol , vol.41 , pp. 439-448
    • Cucher, M.1    Prada, L.2    Mourglia-Ettlin, G.3    Dematteis, S.4    Camicia, F.5    Asurmendi, S.6    Rosenzvit, M.7
  • 18
    • 84863493254 scopus 로고    scopus 로고
    • Characterization of microRNAs in Taenia saginata of zoonotic significance by Solexa deep sequencing and bioinformatics analysis
    • Ai L, Xu MJ, Chen MX, Zhang YN, Chen SH, Guo J, Cai YC, Zhou XN, Zhu XQ, &, Chen JX, (2012) Characterization of microRNAs in Taenia saginata of zoonotic significance by Solexa deep sequencing and bioinformatics analysis. Parasitol Res 110, 2373-2378.
    • (2012) Parasitol Res , vol.110 , pp. 2373-2378
    • Ai, L.1    Xu, M.J.2    Chen, M.X.3    Zhang, Y.N.4    Chen, S.H.5    Guo, J.6    Cai, Y.C.7    Zhou, X.N.8    Zhu, X.Q.9    Chen, J.X.10
  • 20
    • 0036364352 scopus 로고    scopus 로고
    • Surface antigenic variation in Giardia lamblia
    • Nash TE, (2002) Surface antigenic variation in Giardia lamblia. Mol Microbiol 45, 585-590.
    • (2002) Mol Microbiol , vol.45 , pp. 585-590
    • Nash, T.E.1
  • 22
    • 77955920974 scopus 로고    scopus 로고
    • MicroRNAs: A role in drug resistance in parasitic nematodes?
    • Devaney E, Winter AD, &, Britton C, (2010) microRNAs: a role in drug resistance in parasitic nematodes? Trends Parasitol 26, 428-433.
    • (2010) Trends Parasitol , vol.26 , pp. 428-433
    • Devaney, E.1    Winter, A.D.2    Britton, C.3
  • 23
    • 78650664738 scopus 로고    scopus 로고
    • Description of Hymenolepis microstoma (Nottingham strain): A classical tapeworm model for research in the genomic era
    • Cunningham LJ, &, Olson PD, (2010) Description of Hymenolepis microstoma (Nottingham strain): a classical tapeworm model for research in the genomic era. Parasit Vectors 3, 123.
    • (2010) Parasit Vectors , vol.3 , pp. 123
    • Cunningham, L.J.1    Olson, P.D.2
  • 24
    • 33749507383 scopus 로고    scopus 로고
    • Tumour-related microRNAs functions in Caenorhabditis elegans
    • Jannot G, &, Simard MJ, (2006) Tumour-related microRNAs functions in Caenorhabditis elegans. Oncogene 25, 6197-6201.
    • (2006) Oncogene , vol.25 , pp. 6197-6201
    • Jannot, G.1    Simard, M.J.2
  • 25
    • 28144458897 scopus 로고    scopus 로고
    • LIN-12/Notch activation leads to microRNA-mediated down-regulation of Vav in C. Elegans
    • Yoo AS, &, Greenwald I, (2005) LIN-12/Notch activation leads to microRNA-mediated down-regulation of Vav in C. elegans. Science 310, 1330-1333.
    • (2005) Science , vol.310 , pp. 1330-1333
    • Yoo, A.S.1    Greenwald, I.2
  • 26
    • 77649205882 scopus 로고    scopus 로고
    • An 'in-depth' description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
    • Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, &, Pan W, (2010) An 'in-depth' description of the small non-coding RNA population of Schistosoma japonicum schistosomulum. PLoS Negl Trop Dis 4, e596.
    • (2010) PLoS Negl Trop Dis , vol.4
    • Wang, Z.1    Xue, X.2    Sun, J.3    Luo, R.4    Xu, X.5    Jiang, Y.6    Zhang, Q.7    Pan, W.8
  • 27
    • 80053446656 scopus 로고    scopus 로고
    • MicroRNA predictors of longevity in Caenorhabditis elegans
    • e1002306
    • Pincus Z, Smith-Vikos T, &, Slack FJ, (2011) MicroRNA predictors of longevity in Caenorhabditis elegans. PLoS Genet 7, e1002306.
    • (2011) PLoS Genet , vol.7
    • Pincus, Z.1    Smith-Vikos, T.2    Slack, F.J.3
  • 28
    • 81055130277 scopus 로고    scopus 로고
    • MicroRNAs play critical roles in the survival and recovery of Caenorhabditis elegans from starvation-induced L1 diapause
    • Zhang X, Zabinsky R, Teng Y, Cui M, &, Han M, (2011) microRNAs play critical roles in the survival and recovery of Caenorhabditis elegans from starvation-induced L1 diapause. Proc Natl Acad Sci USA 108, 17997-18002.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 17997-18002
    • Zhang, X.1    Zabinsky, R.2    Teng, Y.3    Cui, M.4    Han, M.5
  • 29
    • 84859466185 scopus 로고    scopus 로고
    • The C. Elegans microRNA mir-71 acts in neurons to promote germline-mediated longevity through regulation of DAF-16/FOXO
    • Boulias K, &, Horvitz HR, (2012) The C. elegans microRNA mir-71 acts in neurons to promote germline-mediated longevity through regulation of DAF-16/FOXO. Cell Metab 15, 439-450.
    • (2012) Cell Metab , vol.15 , pp. 439-450
    • Boulias, K.1    Horvitz, H.R.2
  • 31
    • 38849096973 scopus 로고    scopus 로고
    • MiR-10 represses HoxB1a and HoxB3a in zebrafish
    • Woltering JM, &, Durston AJ, (2008) MiR-10 represses HoxB1a and HoxB3a in zebrafish. PLoS One 3, e1396.
    • (2008) PLoS One , vol.3
    • Woltering, J.M.1    Durston, A.J.2
  • 33
    • 78651293534 scopus 로고    scopus 로고
    • MiRBase: Integrating microRNA annotation and deep-sequencing data
    • Kozomara A, &, Griffiths-Jones S, (2011) miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res 39, D152-157.
    • (2011) Nucleic Acids Res , vol.39
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 35
    • 0028196714 scopus 로고
    • From sequences to shapes and back: A case study in RNA secondary structures
    • Schuster P, Fontana W, Stadler PF, &, Hofacker IL, (1994) From sequences to shapes and back: a case study in RNA secondary structures. Proc Biol Sci 255, 279-284.
    • (1994) Proc Biol Sci , vol.255 , pp. 279-284
    • Schuster, P.1    Fontana, W.2    Stadler, P.F.3    Hofacker, I.L.4
  • 36
    • 74549125386 scopus 로고    scopus 로고
    • SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building
    • Gouy M, Guindon S, &, Gascuel O, (2010) SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 27, 221-224.
    • (2010) Mol Biol Evol , vol.27 , pp. 221-224
    • Gouy, M.1    Guindon, S.2    Gascuel, O.3
  • 37
    • 58049218990 scopus 로고    scopus 로고
    • TOPALi v2: A rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops
    • Milne I, Lindner D, Bayer M, Husmeier D, McGuire G, Marshall DF, &, Wright F, (2009) TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. Bioinformatics 25, 126-127.
    • (2009) Bioinformatics , vol.25 , pp. 126-127
    • Milne, I.1    Lindner, D.2    Bayer, M.3    Husmeier, D.4    McGuire, G.5    Marshall, D.F.6    Wright, F.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.