Mass spectrometry-based tissue imaging

Advanced Imaging in Biology and Medicine: Technology, Software Environments, Applications

Volumn , Issue , 2009, Pages 131-146

  Parker, Carol E ^a   Smith, Derek ^b   Suckau, Detlev ^b   Borchers, Christoph H ^c  

^a UNIVERSITY OF NORTH CAROLINA   (United States)

^b BRUKER DALTONIK GMBH   (Germany)

^c UNIVERSITY OF VICTORIA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84885831884     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-3-540-68993-5_6     Document Type: Chapter

References (63)

1. Aerni H-R, Cornett DS, Caprioli RM (2006) Automated acoustic matrix deposition for MALDI sample preparation. Anal Chem 78(3):827-834 (Pubitemid 43228590)
2. Billeci TM, Stults JT (1993) Tryptic mapping of recombinant proteins by matrix-assisted laser desorption/ionization mass spectrometry. Anal Chem 65(13):1709-1716 (Pubitemid 23243701)
3. Caldwell RL, Caprioli RM (2005) Tissue profiling and imaging by matrix-assisted laser desorption ionization mass spectrometry. Proteomics Cancer Res:107-116
4. Caldwell RL, Gonzalez A, Oppenheimer SR, Schwartz HS, Caprioli RM (2006) Molecular assessment of the tumor protein microenvironment using imaging mass spectrometry. Cancer Genomics Proteomics 3(4):279-288
5. Caprioli RM (2004a) Imaging of proteins in tissue sections using mass spectrometry as a discovery tool. Zhipu Xuebao 25(Suppl):119-120
6. Caprioli RM (2004b) Direct imaging and profiling of proteins in tissues using mass spectrometry to aid diagnosis and treatment of disease and to identify therapeutic targets. Abstracts from the 56th Southeast Regional Meeting of the American Chemical Society, Research Triangle Park, NC, 10-13 Nov. 2004, GEN-211
7. Caprioli RM (2005) Direct imaging and profiling of proteins in tissues using mass spectrometry to aid diagnosis and treatment of disease and to identify therapeutic targets. Abstracts of Papers from the 229th ACS National Meeting, San Diego, CA, 13-17 March 2005, ANYL-385
8. Caprioli RM (2006) In situ molecular imaging of proteins in tissues using mass spectrometry: A new tool for biological and clinical research. Abstracts of Papers from the 231st ACS National Meeting, Atlanta, GA, 26-30 March 2006, ANYL-276
9. Caprioli RM, Chaurand P (2001) Profiling and imaging of peptides and proteins in biological tissues using MALDI MS. Adv Mass Spectrom 15:3-18
10. Caprioli RM, Farmer TB, Zhang H, Stoeckli M (1997a) Molecular imaging of biological samples by MALDI MS. Book of Abstracts from the 214th ACS National Meeting, Las Vegas, NV, 7-11 Sept. 1997, ANYL-113
11. Caprioli RM, Farmer TB, Gile J (1997b) Molecular imaging of biological samples: localization of peptides and proteins using MALDI-TOF MS. Anal Chem 69(23):4751-4760
12. Chaurand P, Caprioli RM (2001) Direct tissue analysis for profiling and imaging of proteins. Abstracts of Papers from the 222nd ACS National Meeting, Chicago, IL, 26-30 Aug. 2001, TOXI-003
13. Chaurand P, Caprioli RM (2002) Direct profiling and imaging of peptides and proteins from mammalian cells and tissue sections by mass spectrometry. Electrophoresis 23(18):3125-3135 (Pubitemid 35154163)
14. Chaurand P, Schwartz SA, Caprioli RM (2002) Imaging mass spectrometry: a new tool to investigate the spatial organization of peptides and proteins in mammalian tissue sections. Curr Opin Chem Biol 6(5):676-681 (Pubitemid 35284200)
15. Chaurand P, Fouchecourt S, DaGue BB, Xu, BJ, Reyzer ML, Orgebin-crist M-C, Caprioli RM (2003) Profiling and imaging proteins in the mouse epididymis by imaging mass spectrometry. Proteomics 3(11):2221-2239 (Pubitemid 37414087)
16. Chaurand P, Sanders ME, Jensen RA, Caprioli RM (2004a) Proteomics in diagnostic pathology: profiling and imaging proteins directly in tissue sections. Am J Pathol 165(4):1057-1068 (Pubitemid 39297713)
17. Chaurand P, Schwartz SA, Caprioli RM (2004b) Profiling and imaging proteins in tissue sections by MS. Anal Chem 76(5):86A-93A (Pubitemid 38280465)
18. Chaurand P, Schwartz SA, Caprioli RM (2004c) Assessing protein patterns in disease using imaging mass spectrometry. J Proteome Res 3(2):245-252 (Pubitemid 38500991)
19. Chaurand P, Schwartz SA, Billheimer D, Xu BJ, Crecelius A, Caprioli RM (2004d) Integrating histology and imaging mass spectrometry. Anal Chem 76(4):1145-1155 (Pubitemid 38235565)
20. Chaurand P, Hayn G, Matter U, Caprioli RM (2004e) Exploring the potential of cryodetectors for the detection of matrix-assisted laser desorption/ionization produced ions: application to profiling and imaging mass spectrometry. Zhipu Xuebao 25(suppl):205-206, 216
21. Chaurand P, Schwartz S, Reyzer M, Caprioli R (2005) Imaging mass spectrometry: principles and potentials. Toxicol Pathol 33(1):92-101 (Pubitemid 40216808)
22. Chaurand P, Cornett DS, Caprioli RM (2006a) Molecular imaging of thin mammalian tissue sections by mass spectrometry. Curr Opin Biotechnol 17(4):431-436 (Pubitemid 44163451)
23. Chaurand P, Norris JL, Cornett DS, Mobley JA, Caprioli RM (2006b) New developments in profiling and imaging of proteins from tissue sections by MALDI mass spectrometry. J Proteome Res 5(11):2889-2900 (Pubitemid 44749207)
24. Chaurand P, Schriver KE, Caprioli RM (2007) Instrument design and characterization for high resolution MALDI-MS imaging of tissue sections. J Mass Spectrom 42(4):476-489 (Pubitemid 46649084)
25. Claydon MA, Davey SN, Edwards-Jones V, Gordon DB (1996) The rapid identification of intact microorganisms using mass spectrometry. Nat Biotechnol 14:1584-1586 (Pubitemid 26365554)
26. Cornett DS, Mobley JA, Dias EC, Andersson M, Arteaga CL, Sanders ME, Caprioli RM (2006) A novel histology-directed strategy for MALDI-MS tissue profiling that improves throughput and cellular specificity in human breast cancer. Mol Cell Proteomics 5(10):1975-2198
27. Cornett DS, Reyzer ML, Chaurand P, Caprioli RM (2007) MALDI imaging mass spectrometry: molecular snapshots of biochemical systems. Nat Methods 4(10):828-833 (Pubitemid 350055580)
28. Crecelius AC, Cornett DS, Caprioli RM, Williams B, Dawant BM, Bodenheimer B (2005) Three-dimensional visualization of protein expression in mouse brain structures using imaging mass spectrometry. J Am Soc Mass Spectrom 16(7):1093-1099 (Pubitemid 40828790)
29. Deininger S-O, Krieg R, Rauser S, Walch A (2008) Advances in molecular histology with the MALDI molecular imager. Bruker Appl Note MT-89:1-6
30. Dufresne-Martin G, Lemay J-F, Lavigne P, Klarskov K (2005) Peptide mass fingerprinting by matrix-assisted laser desorption ionization mass spectrometry of proteins detected by immunostaining on nitrocellulose. Proteomics 5:55-66 (Pubitemid 40189637)
31. Fuchs B, Schiller J, Suess R, Zscharnack M, Bader A, Mueller P, Schuerenberg M, Becker M, Suckau D (2008) Analysis of stem cell lipids by offline HPTLC-MALDI-TOF MS. Anal Bioanal Chem. Aug 5, Epub ahead of print
32. Groseclose MR, Chaurand P, Wirth PS, Massion PP, Caprioli RM (2005) Investigating formalin fixed paraffin embedded tissue specimens by imaging MALDI mass spectrometry: application to lung cancer tissue microarrays. Presented at HUPO 4, 29 Aug.-1 Sept. 2005, Munich, Germany
33. Groseclose MR, Andersson M, Hardesty WM, Caprioli RM (2007) Identification of proteins directly from tissue: in situ tryptic digestions coupled with imaging mass spectrometry. J Mass Spectrom 42(2):254-262
34. Holland RD, Wilkes JG, Rafii F, Sutherland JB, Persons CC, Voorhees KJ, Lay JOJ (1996) Rapid identification of intact whole bacteria based on spectral patterns using matrix-assisted laser desorption/ionization with time-of-flight mass spectrometry. Rapid Commun Mass Spectrom 10:1227-1232 (Pubitemid 26311530)
35. Holle A, Haase A, Kayser M, Höhndorf J (2006) Optimizing UV laser focus profiles for improved MALDI performance. J Mass Spectrom 41(6):705-716 (Pubitemid 44023098)
36. Khatib-Shahidi S, Andersson M, Herman JL, Gillespie TA, Caprioli RM (2006) Direct molecular analysis of whole-body animal tissue sections by imaging MALDI mass spectrometry. Anal Chem 78(18):6448-6456 (Pubitemid 44418954)
37. Kimura S, Kameyama A, Nakaya S, Ito H, Narimatsu H (2007) Direct on-membrane glycoproteomic approach using MALDI-TOF mass spectrometry coupled with microdispensing of multiple enzymes. J Proteome Res 6(7):2488-2494 (Pubitemid 47122345)
38. Krishnamurthy T, Ross PL, Rajamani U (1996) Detection of pathogenic and nonpathogenic bacteria by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Rapid Commun Mass Spectrom 10:883-888 (Pubitemid 126680193)
39. Kutz KK, Schmidt JJ, Li L (2004) In situ tissue analysis of neuropeptides by MALDI FTMS in-cell accumulation. Anal Chem 76(19):5630-5640 (Pubitemid 39313308)
40. Lange V, Malmström JA, Didion J, King NL, Johansson, BP, Schäfer J, Rameseder J, Wong CH, Deutsch EW, Brusniak MY, Bühlmann P, Björck L, Domon B, Aebersold R (2008) Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring. Mol Cell Proteomics 7(8):1489-1500
41. Lemaire R, Stauber J, Wisztorski M, Van Camp C, Desmons A, Deschamps M, Proess G, Rudlof I, Woods AS, Day R, Salzet M, Fournier I (2007a) Tag-mass: specific molecular imaging of transcriptome and proteome by mass spectrometry based on photocleavable tag. J Proteome Res 6(6):2057-2067 (Pubitemid 46985093)
42. Lemaire R, Desmons A, Tabet JC, Day R, Salzet M, Fournier I (2007b) Direct analysis and MALDI imaging of formalin-fixed, paraffin-embedded tissue sections. J Proteome Res 6(4):1295-1305 (Pubitemid 46724026)
43. Mahajan NP, Liu Y, Majumder S, Warren MR, Parker CE, Mohler JL, Earp HS III, Whang YE (2007) Activated Cdc42-associated kinase Ack1 promotes prostate cancer progression via androgen receptor tyrosine phosphorylation. Proc Natl Acad Sci USA 104(20):8438-8443 (Pubitemid 47175506)
44. McDonnell LA, Heeren RMA (2007) Imaging mass spectrometry. Mass Spectrom Rev 26:606-643 (Pubitemid 47169781)
45. McLean JA, Ridenour WB, Caprioli RM (2007) Profiling and imaging of tissues by imaging ion mobility-mass spectrometry. J Mass Spectrom 42(8):1099-1105 (Pubitemid 47255462)
46. Meistermann H, Norris JL, Aerni H-R, Cornett DS, Friedlein A, Erskine AR, Augustin A, De Vera Mudry MC, Ruepp S, Suter L, Langen H, Caprioli RM, Ducret A (2006) Biomarker discovery by imaging mass spectrometry: transthyretin is a biomarker for gentamicin-induced nephrotoxicity in rat. Mol Cell Proteomics 5(10):1876-1886 (Pubitemid 44688196)
47. Nadler TK, Wagenfeld BG, Huang Y, Lotti RJ, Parker KC, Vella GJ (2004) Electronic Western blot of matrix-assisted laser desorption/ionization mass spectrometric-identified polypeptides from parallel processed gel-separated proteins. Anal Biochem 332:337-348 (Pubitemid 39485743)
48. Nakanishi T, Ando E, Furuta M, Tsunasawa S, Nishimura O (2007) Direct on-membrane peptide mass fingerprinting with MALDI-MS of tyrosine-phosphorylated proteins detected by immunostaining. J Chromatogr B 846:24-29 (Pubitemid 46216194)
49. Parker CE, Papac DI, Tomer KB (1996) Monitoring cleavage of fusion proteins by matrix-assisted laser desorption ionization/mass spectrometry: recombinant HIV-1IIIB p26. Anal Biochem 239(1):25-34
50. Parker CE, Warren MR, Loiselle DR, Dicheva NN, Scarlett CO, Borchers CH (2005) Identification of components of protein complexes, vol. 301. Humana, Patterson, NJ, pp 117-151
51. Perkins JR, Smith B, Gallagher RT, Jones DS, Davis SC, Hoffman AD, Tomer KB (1993) Application of electrospray mass spectrometry and matrix-assisted laser desorption ionization time-of-flight mass spectrometry for molecular weight assignment of peptides in complex mixtures. J Am Soc Mass Spectrom 4(8):670-84
52. Redeker V, Toullec JY, Vinh J, Rossier J, Soyez D (1998) Combination of peptide profiling by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and immunodetection on single glands or cells. Anal Chem 70(9):1805-1811
53. Reyzer ML, Caprioli RM (2005) MS imaging: new technology provides new opportunities. In: Korfmacher WA (ed) Using mass spectrometry for drug metabolism studies. CRC, Boca Raton, FL, pp 305-328
54. Reyzer ML, Caprioli RM (2007) MALDI-MS-based imaging of small molecules and proteins in tissues. Curr Opin Chem Biol 11(1):29-35 (Pubitemid 46217921)
55. Rubakhin SS, Greenough WT, Sweedler JV (2003) Spatial profiling with MALDI MS: distribution of neuropeptides within single neurons. Anal Chem 75(20):5374-5380 (Pubitemid 37280561)
56. Schuerenberg M, Luebbert C, Deininger S, Mueller R, Suckau D (2007) A new preparation technique for MALDI tissue imaging. Presented at the ASMS Workshop on Imaging Mass Spectrometry, Sanibel, FL, 19-22 Jan. 2007
57. Schwamborn K, Krieg RCMR, Jakse G, Knuechel R, Wellmann A (2007) Identifying prostate carcinoma by MALDI imaging. Int J Mol Med 20:155-159
58. Schwartz SA, Reyzer ML, Caprioli RM (2003) Direct tissue analysis using matrix-assisted laser desorption/ionization mass spectrometry: practical aspects of sample preparation. J Mass Spectrom 38(7):699-708 (Pubitemid 36950300)
59. Shimma S, Furuta M, Ichimura K, Yoshida Y, Setou M (2006) Direct MS/MS analysis in mammalian tissue sections using MALDI-QIT-TOFMS and chemical inkjet technology. Surf Interface Anal 38:1712-1714 (Pubitemid 46033917)
60. Stoeckli M, Farmer TB, Caprioli RM (1999) Automated mass spectrometry imaging with a matrix-assisted laser desorption ionization time-of-flight instrument. J Am Soc Mass Spectrom 10(1):67-71 (Pubitemid 34450237)
61. Stoeckli M, Chaurand P, Hallahan DE, Caprioli RM (2001) Imaging mass spectrometry: A new technology for the analysis of protein expression in mammalian tissues. Nat Med (New York) 7(4):493-496 (Pubitemid 32298555)
62. Thiery G, Shchepinov MS, Southern EM, Audebourg A, Audard V, Terris B, Gut IG (2007) Multiplex target protein imaging in tissue sections by mass spectrometry-TAMSIM. Rapid Commun Mass Spectrom 21:823-829 (Pubitemid 46426800)
63. Todd PJ, Schaaff TG, Chaurand P, Caprioli RM (2001) Organic ion imaging of biological tissue with secondary ion mass spectrometry and matrix-assisted laser desorption/ionization. J Mass Spectrom 36(4):355-369 (Pubitemid 32409879)