A novel histology-directed strategy for MALDI-MS tissue profiling that improves throughput and cellular specificity in human breast cancer

Molecular and Cellular Proteomics

Volumn 5, Issue 10, 2006, Pages 1975-1983

  Cornett, Dale S ^a   Mobley, James A ^a   Dias, Eduardo C ^a   Andersson, Malin ^a   Arteaga, Carlos L ^a   Sanders, Melinda E ^a   Caprioli, Richard M ^a  

^a VANDERBILT INGRAM CANCER CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ADULT; ANIMAL EXPERIMENT; ANIMAL MODEL; ANIMAL TISSUE; ARTICLE; AUTOMATION; BREAST CANCER; BREAST EPITHELIUM; CANCER INVASION; CARCINOMA IN SITU; CELL SPECIFICITY; FEMALE; HIGH THROUGHPUT SCREENING; HISTOPATHOLOGY; HUMAN; HUMAN TISSUE; IMAGE ANALYSIS; IMAGE QUALITY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MOUSE; NONHUMAN; PRIORITY JOURNAL; PROTEOMICS; REPRODUCIBILITY; STROMA; TISSUE SPECIFICITY;

ADULT; ANIMALS; BREAST NEOPLASMS; FEMALE; HUMANS; MICE; MICE, TRANSGENIC; MICRODISSECTION; MIDDLE AGED; NEOPLASM PROTEINS; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TISSUE ARRAY ANALYSIS;

EID: 33750604754     PISSN: 15359476     EISSN: None     Source Type: Journal    
DOI: 10.1074/mcp.M600119-MCP200     Document Type: Article

References (29)

1. Todd, P. J., Schaaff, T. G., Chaurand, P., and Caprioli, R. M. (2001) Organic ion imaging of biological tissue with secondary ion mass spectrometry and matrix-assisted laser desorption/ionization. J. Mass Spectrom. 36, 355-369
2. Caldwell, R. L., and Caprioli, R. M. (2005) Tissue profiling by mass spectrometry: A review of methodology and applications. Mol. Cell. Proteomics 4, 394-401
3. Laurent, C., Levinson, D. F., Schwartz, S. A., Harrington, P. B., Markey, S. P., Caprioli, R. M., and Levitt, P. (2005) Direct profiling of the cerebellum by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry: A methodological study in postnatal and adult mouse. J. Neurosci. Res. 81, 613-621
4. Schwartz, S. A., Weil, R. J., Thompson, R. C., Shyr, Y., Moore, J. H., Toms, S. A., Johnson, M. D., and Caprioli, R. M. (2005) Proteomic-based prognosis of brain tumor patients using direct-tissue matrix-assisted laser desorption ionization mass spectrometry. Cancer Res. 65, 7674-7681
5. Chaurand, P., Sanders, M. E., Jensen, R. A., and Caprioli, R. M. (2004) Proteomics in diagnostic pathology: Profiling and imaging proteins directly in tissue sections. Am. J. Pathol. 165, 1057-1068
6. Yanagisawa, K., Shyr, Y., Xu, B. G. J., Massion, P. P., Larsen, P. H., White, B. C., Roberts, J. R., Edgerton, M., Gonzalez, A., Nadaf, S., Moore, J. H., Caprioli, R. M., and Carbone, D. P. (2003) Proteomic patterns of tumour subsets in non-small-cell lung cancer. Lancet 362, 433-439
7. Lee, K. R., Lin, X. W., Park, D. C., and Eslava, S. (2003) Megavariate data analysis of mass spectrometric proteomics data using latent variable projection method. Proteomics 3, 1680-1686
8. Morris, J. S., Coombes, K. R., Koomen, J., Baggerly, K. A., and Kobayashi, R. (2005) Feature extraction and quantification for mass spectrometry in biomedical applications using the mean spectrum. Bioinformatics 21, 1764-1775
9. Semmes, O. J., Feng, Z., Adam, B. L., Banez, L. L., Bigbee, W. L., Campos, D., Cazares, L. H., Chan, D. W., Grizzle, W. E., Izbicka, E., Kagan, J., Malik, G., McLerran, D., Moul, J. W., Partin, A., Prasanna, P., Rosenzweig, J., Sokoll, L. J., Srivastava, S., Srivastava, S., Thompson, I., Welsh, M. J., White, N., Winget, M., Yasui, Y., Zhang, Z., and Zhu, L. (2005) Evaluation of serum protein profiling by surface-enhanced laser desorption/ionization time-of-flight mass spectrometry for the detection of prostate cancer: I. Assessment of platform reproducibility. Clin. Chem. 51, 102-112
10. Wagner, M., Naik, D., and Pothen, A. (2003) Protocols for disease classification from mass spectrometry data. Proteomics 3, 1692-1698
11. Yasui, Y., McLerran, D., Adam, B. L., Winget, M., Thornquist, M., and Feng, Z. D. (2003) An automated peak identification/calibration procedure for high-dimensional protein measures from mass spectrometers. J. Biomed. Biotechnol. 2003, 242-248
12. Baggerly, K. A., Morris, J. S., Wang, J., Gold, D., Xiao, L. C., and Coombes, K. R. (2003) A comprehensive approach to the analysis of matrix-assisted laser desorption/ionization-time of flight proteomics spectra from serum samples. Proteomics 3, 1667-1672
13. Markey, M. K., Tourassi, G. D., and Floyd, C. E. (2003) Decision tree classification of proteins identified by mass spectrometry of blood serum samples from people with and without lung cancer. Proteomics 3, 1678-1679
14. Slotta, D. J., Heath, L. S., Ramakrishnan, N., Helm, R., and Potts, M. (2003) Clustering mass spectrometry data using order statistics. Proteomics 3, 1687-1691
15. Tatay, J. W., Feng, X., Sobczak, N., Jiang, H., Chen, C. F., Kirova, R., Struble, C., Wang, N. J., and Tonellato, P. J. (2003) Multiple approaches to data-mining of proteomic data based on statistical and pattern classification methods. Proteomics 3, 1704-1709
16. Chaurand, P., Schwartz, S. A., Billheimer, D., Xu, B. G. J., Crecelius, A., and Caprioli, R. M. (2004) Integrating histology and imaging mass spectrometry. Anal. Chem. 76, 1145-1155
17. Reyzer, M. L., and Caprioli, R. M. (2005) MALDI mass spectrometry for direct tissue analysis: A new tool for biomarker discovery. J. Proteome Res. 4, 1138-1142
18. Schwartz, S. A., Weil, R. J., Johnson, M. D., Toms, S. A., and Caprioli, R. M. (2004) Protein profiling in brain tumors using mass spectrometry: Feasibility of a new technique for the analysis of protein expression. Clin. Cancer Res. 10, 981-987
19. Xu, B. J., Caprioli, R. M., Sanders, M. E., and Jensen, R. A. (2002) Direct analysis of laser capture microdissected cells by MALDI mass spectrometry. J. Am. Soc. Mass Spectrom. 13, 1292-1297
20. Palmer-Toy, D. E., Sarracino, D. A., Sgroi, D., LeVangie, R., and Leopold, P. E. (2000) Direct acquisition of matrix assisted laser desorption/ionization time-of-flight mass spectra from laser capture miscrodissected tissues. Clin. Chem. 46, 1513-1516
21. Aerni, H. R., Cornett, D. S., and Caprioli, R. M. (2006) Automated acoustic matrix deposition for MALDI sample preparation. Anal. Chem. 78, 827-834
22. Bogan, M. J., and Agnes, G. R. (2004) Wall-less sample preparation of um-sized sample spots for femtomole detection limits of proteins from liquid based UV-MALDI matrices. J. Am. Soc. Mass Spectr. 15, 486-495
23. Ericson, C., Phung, Q. T., Horn, D. M., Peters, E. C., Fitchett, J. R., Ficarro, S. B., Salomon, A. R., Brill, L. M., and Brock, A. (2003) An automated noncontact deposition interface for liquid chromatography matrix-assisted laser desorption/ionization mass spectrometry. Anal. Chem. 75, 2309-2315
24. Sloane, A. J., Duff, J. L., Wilson, N. L., Gandhi, P. S., Hill, C. J., Hopwood, F. G., Smith, P. E., Thomas, M. L., Cole, R. A., Packer, N. H., Breen, E. J., Cooley, P. W., Wallace, D. B., Williams, K. L., and Gooley, A. A. (2002) High throughput peptide mass fingerprinting and protein macroarray analysis using chemical printing strategies. Mol. Cell. Proteomics 1, 490-499
25. Wallman, L., Ekstrom, S., Marko-Varga, G., Laurell, T., and Nilsson, J. (2004) Autonomous protein sample processing on-chip using solid-phase microextraction, capillary force pumping, and microdispensing. Electrophoresis 25, 3778-3787
26. Mobley, J. A., Lam, Y. W., Lau, K. M., Pais, V. M., L'Esperance, J. O., Steadman, B., Fuster, L. M. B., Blute, R. D., Taplin, M. E., and Ho, S. M. (2004) Monitoring the serological proteome: The latest modality in prostate cancer detection. J. Urol. 172, 331-337
27. Cserni, G. (2002) Tumour histological grade may progress between primary and recurrent invasive mammary carcinoma. J. Clin. Pathol. (Lond.) 55, 293-297
28. Lacroix, M., Toillon, R. A., and Leclercq, G. (2004) Stable 'portrait' of breast tumors during progression: data from biology, pathology and genetics. Endocr. Relat. Cancer 11, 497-522
29. Ma, X. J., Salunga, R., Tuggle, J. T., Gaudet, J., Enright, E., McQuary, P., Payette, T., Pistone, M., Stecker, K., Zhang, B. M., Zhou, Y. X., Varnholt, H., Smith, B., Gadd, M., Chatfield, E., Kessler, J., Baer, T. M., Erlander, M. G., and Sgroi, D. C. (2003) Gene expression profiles of human breast cancer progression. Proc. Natl. Acad. Sci. U. S. A. 100, 5974-5979