Three-dimensional visualization of protein expression in mouse brain structures using imaging mass spectrometry

Journal of the American Society for Mass Spectrometry

Volumn 16, Issue 7, 2005, Pages 1093-1099

  Crecelius, Anna C ^a   Cornett, D Shannon ^a   Caprioli, Richard M ^a   Williams, Betsy ^b   Dawant, Benoit M ^b   Bodenheimer, Bobby ^b  

^a VANDERBILT UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b VANDERBILT UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BRAIN; IMAGE RECONSTRUCTION; IMAGING TECHNIQUES; IONIZATION; MASS SPECTROMETRY; THREE DIMENSIONAL; TISSUE; VISUALIZATION;

ALIGNED IMAGES; PROTEIN EXPRESSION; TISSUE STRUCTURE;

PROTEINS;

MYELIN BASIC PROTEIN;

ANIMAL TISSUE; ARTICLE; BRAIN MAPPING; BRAIN REGION; BRAIN TISSUE; CORPUS CALLOSUM; CORRELATION ANALYSIS; IMAGE ANALYSIS; MALE; MASS SPECTROMETRY; MATRIX ASSISTED LASER DESORPTION IONIZATION IMAGING MASS SPECTROMETRY; MOUSE; NEUROANATOMY; NEUROIMAGING; NEUROPATHOLOGY; NONHUMAN; OPTICAL DENSITY; PROTEIN EXPRESSION; PROTEOMICS; SURFACE PROPERTY; THREE DIMENSIONAL IMAGING;

ANIMALS; CORPUS CALLOSUM; IMAGING, THREE-DIMENSIONAL; MALE; MICE; MICE, INBRED C57BL; MICROTOMY; MYELIN BASIC PROTEINS; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

EID: 20444490835     PISSN: 10440305     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jasms.2005.02.026     Document Type: Article

References (40)

1. R.A. Robb Three-Dimensional Biomedical Imaging - Principles and Practice 1994 VCH Publishers New York, NY 1 19
2. P. Chaurand, S.A. Schwartz, D. Billheimer, B.J. Xu, A. Crecelius, R.M. Caprioli Integrating Histology and Imaging Mass Spectrometry Anal. Chem. 76 2004 1145 1155
3. P. Chaurand, S.A. Schwartz, R.M. Caprioli Assessing Protein Patterns in Disease Using Imaging Mass Spectrometry J. Prot. Res. 3 2004 245 252
4. P. Chaurand, S.A. Schwartz, R.M. Caprioli Profiling and Imaging Proteins in Tissue by MS Anal. Chem. 76 2004 87A 93A
5. S.L. Luxembourg, T.H. Mize, L.A. McDonnell, R.M.A. Heeren High-Spatial Resolution Mass Spectrometric Imaging of Peptide and Protein Distributions on a Surface Anal. Chem. 76 2004 5339 5344
6. P.J. Todd, J.M. McMahon, C.A. McCandlish Secondary Ion Images of the Developing Mouse Brain J. Am. Soc. Mass Spectrom. 15 2004 1116 1122
7. J. Ashburner, J.G. Csernansky, C. Davatzikos, N.C. Fox, G.B. Frisoni, P.M. Thompson Computer-Assisted Imaging to Assess Brain Structure in Healthy and Diseased Brains Lancet Neurol. 2 2003 79 88
8. J.G. Bjaalie Localization in the Brain New Solutions Emerging Nat. Rev. Neurosci. 3 2002 322 325
9. A.W. Toga, P.M. Thompson Maps of the Brain Anat. Rec. 265 2001 37 53
10. A.W. Toga, P.M. Thompson The Role of Image Registration in Brain Mapping Image Vis. Comput. J. 19 2001 3 24
11. B. Franzen, Y. Yang, D. Sunnenmark, M. Wickmann, J. Ottervald, M. Oppermann, K. Sandberg Dihydroyrimidinase Related Protein-2 as a Biomarker for Temperature and Time Dependant Post Mortem Changes in the Mouse Brain Proteome Proteomics 3 2003 1920 1929
12. Y.F. Zhu, N.I. Taranenko, S.L. Allman, N.V. Taranenko, S.A. Martin, L.A. Haff, C.H. Chen Oligonucleotide Sequencing by Fragmentation in Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry Rapid Commun. Mass Spectrom. 11 1997 897 903
13. M. Stoeckli, T.B. Farmer, R.M. Caprioli Automated Mass Spectrometry Imaging with a Matrix-Assisted Laser Desorption Ionization Time-of-Flight Instrument J. Am. Soc. Mass Spectrom. 10 1999 67 71
14. M. Stoeckli, D. Staab, M. Staufenbiel, K.-H. Wiederhold, L. Signor Molecular Imaging of Amyloid B Peptides in Mouse Brain Sections Using Mass Spectrometry Anal. Biochem. 311 2002 33 39
15. Schroeter, S. Nissl or Counter-Staining with Toluidine Blue O; htpp://bret.mc.vanderbilt.edu/cmn/html/toluidineblue.pdf (2003).
16. E.L.V. Harris, S. Angal Protein Purification Methods 1989 IRL Press New York 1 27
17. P. Chaurand, B.B. DaGue, S. Ma, S. Kasper, R.M. Caprioli Strain-Based Sequence Variations and Structure Analysis of Murine Prostate Specific Spermine Binding Protein Using Mass Spectrometry Biochemistry 40 2001 9725 9733
18. P. Chaurand, B.B. DaGue, R.S. Pearsall, D.W. Threadgill, R.M. Caprioli Profiling Proteins from Azoxymethane-Induced Colon Tumors at the Molecular Level by Matrix Assisted Laser Desorption/Ionization Mass Spectrometry Proteomics 1 2001 1320 1326
19. J.C. Carr, R.K. Beatson, J.B. Cherrie, T.J. Mitchell, W.R. Fright, B.C. McCallum, T.R. Evans Reconstruction and Representation of 3D Objects with Radial Basic Functions 2001 ACM SIGGRAPH Los Angeles, CA 67 76
20. J. Klekamp, A. Ridel, H.J. Kretschmann A New Embedding and Sectioning Technique (Macrovibratome) for Macroscopic and Morphometric Examination Especially of the Human Brain Hirnforsch. 26 1985 33 40
21. A.W. Toga, K. Ambach, B. Quinn, M. Hutchin, J.S. Burton Postmortem Anatomy from Cryosectioned Whole Human Brain J. Neurosci. Methods 54 1994 239 252
22. G. Paxinos, K.B.J. Franklin The Mouse Brain in Stereotaxic Coordinates 2001 Academic Press New York, NY
23. Sidman, R. L., Kosaras, B., Misra, B., Senft, S. High Resolution Mouse Brain Atlas; http://www.hms.harvard.edu/research/brain (2004).
24. P.J. Besl, N.D. McKay A Method for Registration 3-D Shapes IEEE Trans. Patt. Anal. Mach. Intell. 14 1992 239 256
25. J. Lammers Maya 5 Fundamentals 2003 New Riders Indianapolis, IN 27 50
26. P.H. Schonemann, R.M. Carroll Fitting One Matrix to Another under Choice of a Central Dilation and a Rigid Motion Psychometrica 35 1970 245 255
27. K.S. Arun, K.S. Huang, S.D. Blostein Least-Squares Fitting of Two 3-D Point Sets IEEE Trans. Patt. Anal. Mach. Intell. 9 1987 698 700
28. J.M. Fitzpatrick, J. West, C.R. Maurer Predicting Error in Rigid-Body Point-Based Registration IEEE Trans. Med. Imaging 17 1998 694 702
29. F. Maes, A. Collignon, D. Vandermeulen, G. Marchal, P. Suetens Multimodality Image Registration by Maximization of Mutual Information IEEE Trans. Med. Imaging 16 1997 187 198
30. M. Stoeckli, P. Chaurand, D.E. Hallahan, R.M. Caprioli Imaging Mass Spectrometry A New Technology for the Analysis of Protein Expression in Mammalian Tissues Nat. Med. 7 2001 493 496
31. P. Chaurand, S. Fouchecourt, B.B. DaGue, B.J. Xu, M.L. Reyzer, M.-C. Orgebin-Crist, R.M. Caprioli Profiling and Imaging Proteins in the Mouse Epididymis by Imaging Mass Spectrometry Proteomics 3 2003 2221 2239
32. P. Chaurand, S.A. Schwartz, R.M. Caprioli Imaging Mass Spectrometry A New Tool to Investigate the Spatial Organization of Peptides and Proteins in Mammalian Tissue Sections Curr. Opin. Chem. Biol. 6 2002 676 681
33. P. Kursula The Current Structural Studies on Proteins of the Myelin Sheath Int. J. Mol. Med. 8 2001 475 479
34. R.A. Robb Three-Dimensional Visualization in Medicine and Biology 2000 Academic Press San Diego, CA 685 712
35. V.M. Spritzer, D.G. Whitlock The Visible Human Dataset The Anatomical Platform for Human Simulation Anat. Record (New Anat.) 253 1998 49 57
36. P.E. Roland, K. Zilles Brain Atlas - A New Research Tool Trends Neurosci. 17 1994 458 467
37. Schwartz, S. A., Weil, R. J., Thompson, R. C., Shyr, Y., Moore, J., Johnson, M. D., Caprioli, R. M. Proteomic-Based Prognosis of Brain Tumor Patients Using Direct-Tissue MALDI Mass Spectrometry, unpublished.
38. K. Yanagisawa, Y. Shyr, B.J. Xu, P.P. Massion, P.H. Larsen, B.C. White, J.R. Roberts, M. Edgerton, A. Gonzalez, S. Nadaf, J.H. Moore, R.M. Caprioli, D.M. Carbone Proteomic Patterns of Tumor Subsets in Non-Small-Cell Lung Cancer Lancet 362 2003 433 439
39. A.W. Simonetti, W.J. Melssen, M. van der Graaf, G.J. Postma, A. Heerschap, L.M.C. Buydens A Chemometric Approach for Brain Tumor Classification Using Magnetic Resonance Imaging and Spectroscopy Anal. Chem. 75 2003 5352 5361
40. M.L. Reyzer, Y.S. Hsieh, K. Ng, W.A. Korfmacher, R.M. Caprioli Direct Analysis of Drug Candidates in Tissue by Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry J. Mass Spectrom. 38 2003 1081 1092